Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30844 Nelumbo nucifera HOM05D007970 ORTHO05D006261 3.6e-82 308.1 149 100.0
TAR376G1232 Trochodendron aralioides HOM05D007970 ORTHO05D009943 3.8e-23 112.1 102 56.9
TAR633G1261 Trochodendron aralioides HOM05D006872 ORTHO05D006261 1.1e-19 100.5 102 51.0
TAR268G0003 Trochodendron aralioides HOM05D006872 ORTHO05D006261 1.5e-19 100.1 132 44.7
Nn2g14262 Nelumbo nucifera HOM05D006872 ORTHO05D006261 5.6e-19 98.2 102 50.0
Prupe.8G169400 Prunus persica HOM05D007970 ORTHO05D009943 7.3e-19 97.8 107 48.6
Dinv41914 Davidia involucrata HOM05D007970 ORTHO05D009943 1.6e-18 96.7 100 49.0
FAN27G0083 Fragaria x ananassa HOM05D007970 ORTHO05D009943 8.1e-18 94.4 104 49.0
TWI31G1200 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 1.1e-17 94.0 86 57.0
FAN15G0059 Fragaria x ananassa HOM05D007970 ORTHO05D009943 2.4e-17 92.8 104 49.0
Thecc.02G055100 Theobroma cacao HOM05D007970 ORTHO05D009943 2.4e-17 92.8 108 50.0
FvH4_2g15690 Fragaria vesca HOM05D007970 ORTHO05D009943 6.9e-17 91.3 104 49.0
FAN24G2575 Fragaria x ananassa HOM05D007970 ORTHO05D009943 6.9e-17 91.3 104 49.0
MD10G1128300 Malus domestica HOM05D007970 ORTHO05D009943 6.9e-17 91.3 104 46.2
RcHm_v2.0_Chr6g0278991 Rosa chinensis HOM05D007970 ORTHO05D009943 6.9e-17 91.3 132 41.7
COL.COLO4_36729 Corchorus olitorius HOM05D007970 ORTHO05D009943 3.4e-16 89.0 110 48.2
FAN20G1196 Fragaria x ananassa HOM05D007970 ORTHO05D009943 3.4e-16 89.0 104 48.1
TWI75G1150 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 7.6e-16 87.8 114 45.6
MBI01_g17601_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 1.7e-15 86.7 97 47.4
MD12G1037000 Malus domestica HOM05D006872 ORTHO05D006261 1.7e-15 86.7 98 48.0
Duzib248G1052 Durio zibethinus HOM05D007970 ORTHO05D009943 2.9e-15 85.9 124 42.7
Nn6g34756 Nelumbo nucifera HOM05D006872 ORTHO05D006261 2.9e-15 85.9 102 44.1
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 2.9e-15 85.9 103 51.5
MD14G1036000 Malus domestica HOM05D006872 ORTHO05D006261 6.4e-15 84.7 122 44.3
Atru.chr5.3444 Acer truncatum HOM05D007970 ORTHO05D009943 1.1e-14 84.0 86 58.1
PGSC0003DMG400018628 Solanum tuberosum HOM05D007970 ORTHO05D009943 1.1e-14 84.0 103 42.7
Oeu015553.1 Olea europaea HOM05D007970 ORTHO05D009943 1.4e-14 83.6 99 44.4
vmacro17329 Vaccinium macrocarpon HOM05D007970 ORTHO05D009943 1.4e-14 83.6 96 45.8
Cpa.g.sc20.116 Carica papaya HOM05D007970 ORTHO05D009943 1.9e-14 83.2 110 42.7
Cfa005290 Carpinus fangiana HOM05D007970 ORTHO05D009943 1.9e-14 83.2 110 44.5
Haze_02097 Corylus avellana HOM05D007970 ORTHO05D009943 1.9e-14 83.2 110 44.5
Actinidia18037 Actinidia chinensis HOM05D007970 ORTHO05D009943 2.4e-14 82.8 101 45.5
Rhsim04G0129900 Rhododendron simsii HOM05D006872 ORTHO05D006261 2.4e-14 82.8 109 41.3
Actinidia14361 Actinidia chinensis HOM05D007970 ORTHO05D009943 3.2e-14 82.4 87 46.0
Actinidia21480 Actinidia chinensis HOM05D007970 ORTHO05D009943 3.2e-14 82.4 87 46.0
COL.COLO4_29613 Corchorus olitorius HOM05D006872 ORTHO05D006261 5.4e-14 81.6 104 45.2
CSS0030284 Camellia sinensis var. sinensis HOM05D007970 ORTHO05D009943 7.1e-14 81.3 122 36.9
Rhsim05G0052900 Rhododendron simsii HOM05D007970 ORTHO05D009943 9.3e-14 80.9 106 40.6
Sabra06G0158200 Salix brachista HOM05D006872 ORTHO05D006261 9.3e-14 80.9 102 46.1
Gohir.D01G192400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 1.6e-13 80.1 104 44.2
Atru.chr8.1395 Acer truncatum HOM05D006872 ORTHO05D006261 2.7e-13 79.3 141 36.9
Potri.006G205200 Populus trichocarpa HOM05D006872 ORTHO05D006261 2.7e-13 79.3 102 47.1
Sabra16G0075400 Salix brachista HOM05D006872 ORTHO05D006261 2.7e-13 79.3 96 46.9
CiPaw.05G085600 Carya illinoinensis HOM05D007970 ORTHO05D009943 3.5e-13 79.0 118 44.1
FAN05G2500 Fragaria x ananassa HOM05D006872 ORTHO05D006261 3.5e-13 79.0 81 48.1
FAN05G3358 Fragaria x ananassa HOM05D006872 ORTHO05D006261 3.5e-13 79.0 81 48.1
Glyma.02G198900 Glycine max HOM05D006872 ORTHO05D006261 3.5e-13 79.0 106 42.5
Duzib128G0031 Durio zibethinus HOM05D006872 ORTHO05D006261 4.6e-13 78.6 106 43.4
Oeu045100.1 Olea europaea HOM05D007970 ORTHO05D009943 4.6e-13 78.6 87 44.8
CANSAT64G1977 Cannabis sativa HOM05D006872 ORTHO05D006261 6.0e-13 78.2 119 44.5
FvH4_6g19940 Fragaria vesca HOM05D006872 ORTHO05D006261 6.0e-13 78.2 81 48.1
FAN14G4576 Fragaria x ananassa HOM05D006872 ORTHO05D006261 6.0e-13 78.2 81 48.1
Manes.11G099100 Manihot esculenta HOM05D007970 ORTHO05D009943 6.0e-13 78.2 110 44.5
Sopen01g053860 Solanum pennellii HOM05D007970 ORTHO05D009943 7.9e-13 77.8 112 39.3
Ciclev10030163m.g Citrus clementina HOM05D007970 ORTHO05D009943 1.0e-12 77.4 77 55.8
Nitab4.5_0013642g0020 Nicotiana tabacum HOM05D007970 ORTHO05D009943 1.0e-12 77.4 84 47.6
Oeu028958.1 Olea europaea HOM05D007970 ORTHO05D009943 1.0e-12 77.4 89 42.7
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 1.0e-12 77.4 104 44.2
Rhsim11G0193700 Rhododendron simsii HOM05D007970 ORTHO05D009943 1.3e-12 77.0 86 48.8
MBI17_g00990_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 1.8e-12 76.6 120 39.2
PGR004G0970 Punica granatum HOM05D006872 ORTHO05D006261 1.8e-12 76.6 137 40.1
Solyc01g111820.2 Solanum lycopersicum HOM05D007970 ORTHO05D009943 1.8e-12 76.6 124 35.5
TWI77G0288 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 1.8e-12 76.6 104 48.1
CiPaw.09G018900 Carya illinoinensis HOM05D006872 ORTHO05D006261 2.3e-12 76.3 98 45.9
Ciclev10013044m.g Citrus clementina HOM05D006872 ORTHO05D006261 2.3e-12 76.3 95 49.5
Duzib106G0826 Durio zibethinus HOM05D006872 ORTHO05D006261 2.3e-12 76.3 106 43.4
PGSC0003DMG400016417 Solanum tuberosum HOM05D006872 ORTHO05D006261 2.3e-12 76.3 103 44.7
CsaV3_3G037750 Cucumis sativus L. HOM05D006872 ORTHO05D006261 3.0e-12 75.9 113 39.8
Gorai.002G236200 Gossypium raimondii HOM05D006872 ORTHO05D006261 3.0e-12 75.9 103 42.7
Sed0014477 Sechium edule HOM05D006872 ORTHO05D006261 3.0e-12 75.9 98 41.8
Actinidia20529 Actinidia chinensis HOM05D007970 ORTHO05D009943 3.9e-12 75.5 74 52.7
ClCG02G012110 Citrullus lanatus HOM05D007970 ORTHO05D009943 3.9e-12 75.5 111 44.1
ClCG10G018510 Citrullus lanatus HOM05D006872 ORTHO05D006261 3.9e-12 75.5 113 38.9
Gohir.A01G202400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 3.9e-12 75.5 93 47.3
Actinidia07935 Actinidia chinensis HOM05D006872 ORTHO05D006261 5.1e-12 75.1 81 53.1
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 6.7e-12 74.7 76 55.3
SalBow5G3820 Salvia bowleyana HOM05D006872 ORTHO05D006261 6.7e-12 74.7 98 43.9
Dinv14128 Davidia involucrata HOM05D007970 ORTHO05D009943 1.1e-11 73.9 98 45.9
Glyma.19G198100 Glycine max HOM05D006872 ORTHO05D006261 1.1e-11 73.9 97 48.5
SalBow6G0243 Salvia bowleyana HOM05D006872 ORTHO05D006261 1.1e-11 73.9 98 44.9
CAN.G588.103 Capsicum annuum HOM05D007970 ORTHO05D009943 1.5e-11 73.6 95 47.4
CiPaw.10G015400 Carya illinoinensis HOM05D006872 ORTHO05D006261 1.5e-11 73.6 120 41.7
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 1.5e-11 73.6 90 46.7
Sed0000741 Sechium edule HOM05D006872 ORTHO05D006261 1.5e-11 73.6 98 42.9
Manes.08G031500 Manihot esculenta HOM05D006872 ORTHO05D006261 1.9e-11 73.2 91 46.2
Aqoxy4G02683 Aquilegia oxysepala HOM05D006872 ORTHO05D006261 2.5e-11 72.8 136 39.0
MELO3C009518.2 Cucumis melo HOM05D006872 ORTHO05D006261 2.5e-11 72.8 113 38.1
Gohir.A03G206000 Gossypium hirsutum HOM05D007970 ORTHO05D009943 2.5e-11 72.8 127 36.2
Gohir.D02G227400 Gossypium hirsutum HOM05D007970 ORTHO05D009943 2.5e-11 72.8 90 43.3
Gorai.005G255300 Gossypium raimondii HOM05D007970 ORTHO05D009943 2.5e-11 72.8 90 43.3
Lsat_1_v5_gn_2_55301 Lactuca sativa HOM05D006872 ORTHO05D006261 2.5e-11 72.8 82 48.8
Sabra04G0119900 Salix brachista HOM05D007970 ORTHO05D009943 2.5e-11 72.8 90 43.3
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 2.5e-11 72.8 80 51.2
MSTRG.26609 Avicennia marina HOM05D006872 ORTHO05D006261 4.3e-11 72.0 91 45.1
CDE02G4309 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 4.3e-11 72.0 82 48.8
Gohir.A04G131900 Gossypium hirsutum HOM05D007970 ORTHO05D009943 4.3e-11 72.0 91 45.1
Hma1.2p1_0032F.1_g019140 Hydrangea macrophylla HOM05D007970 ORTHO05D009943 4.3e-11 72.0 90 43.3
Manes.04G070700 Manihot esculenta HOM05D007970 ORTHO05D009943 4.3e-11 72.0 105 41.9
Potri.004G178101 Populus trichocarpa HOM05D007970 ORTHO05D009943 4.3e-11 72.0 89 43.8
CANSAT25G3784 Cannabis sativa HOM05D007970 ORTHO05D009943 5.6e-11 71.6 131 37.4
Lsat_1_v5_gn_6_35120 Lactuca sativa HOM05D006872 ORTHO05D006261 5.6e-11 71.6 80 47.5
Ca_09043_v3 Cicer arietinum L. HOM05D006872 ORTHO05D006261 7.4e-11 71.2 102 48.0
MELO3C024577.2 Cucumis melo HOM05D006872 ORTHO05D006261 7.4e-11 71.2 104 41.3
ECA238G4730 Erigeron canadensis HOM05D006872 ORTHO05D006261 9.6e-11 70.9 88 42.0
Oeu009304.1 Olea europaea HOM05D006872 ORTHO05D006261 9.6e-11 70.9 98 46.9
PSO384G3916 Papaver somniferum HOM05D006872 ORTHO05D006261 9.6e-11 70.9 86 45.3
QL07p037475 Quercus lobata HOM05D006872 ORTHO05D006261 9.6e-11 70.9 105 42.9
Gorai.012G156800 Gossypium raimondii HOM05D007970 ORTHO05D009943 1.3e-10 70.5 90 43.3
Lsat_1_v5_gn_5_87380 Lactuca sativa HOM05D006872 ORTHO05D006261 1.3e-10 70.5 76 47.4
Solyc01g007770.2 Solanum lycopersicum HOM05D006872 ORTHO05D006261 1.3e-10 70.5 95 45.3
Sopen01g003310 Solanum pennellii HOM05D006872 ORTHO05D006261 1.3e-10 70.5 95 45.3
THA.LOC104816611 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 1.3e-10 70.5 94 44.7
Sed0018559 Sechium edule HOM05D006872 ORTHO05D006261 2.1e-10 69.7 102 41.2
VMungo0720G0028 Vigna mungo HOM05D006872 ORTHO05D006261 2.1e-10 69.7 108 39.8
Gohir.D04G168500 Gossypium hirsutum HOM05D007970 ORTHO05D009943 3.7e-10 68.9 90 42.2
Lalb_Chr20g0111461 Lupinus albus HOM05D006872 ORTHO05D006261 3.7e-10 68.9 119 40.3
Nn4g22751 Nelumbo nucifera HOM05D006872 ORTHO05D006261 3.7e-10 68.9 54 59.3
Glyma.03G200500 Glycine max HOM05D006872 ORTHO05D006261 4.8e-10 68.6 100 46.0
Peaxi162Scf00362g00411 Petunia axillaris HOM05D007970 ORTHO05D009943 4.8e-10 68.6 97 38.1
QL11p052437 Quercus lobata HOM05D007970 ORTHO05D009943 4.8e-10 68.6 117 37.6
unitig_578.g16361 Utricularia gibba HOM05D006872 ORTHO05D006261 4.8e-10 68.6 84 46.4
CiPaw.13G131800 Carya illinoinensis HOM05D006872 ORTHO05D006261 6.2e-10 68.2 119 37.0
Gohir.D01G161700 Gossypium hirsutum HOM05D007970 ORTHO05D009943 6.2e-10 68.2 127 36.2
Psat3g030200 Pisum sativum HOM05D006872 ORTHO05D006261 6.2e-10 68.2 96 49.0
Cpa.g.sc104.60 Carica papaya HOM05D006872 ORTHO05D006261 8.1e-10 67.8 91 49.5
FAN09G3456 Fragaria x ananassa HOM05D006872 ORTHO05D006261 8.1e-10 67.8 81 43.2
Gorai.002G200600 Gossypium raimondii HOM05D007970 ORTHO05D009943 8.1e-10 67.8 127 36.2
Lj1g0011262 Lotus japonicus HOM05D006872 ORTHO05D006261 8.1e-10 67.8 107 41.1
Lsat_1_v5_gn_4_72040 Lactuca sativa HOM05D007970 ORTHO05D009943 1.1e-09 67.4 69 52.2
Nitab4.5_0000020g0340 Nicotiana tabacum HOM05D006872 ORTHO05D006261 1.1e-09 67.4 103 39.8
PSO339G3041 Papaver somniferum HOM05D006872 ORTHO05D006261 1.1e-09 67.4 93 40.9
HanXRQChr15g0494731 Helianthus annuus HOM05D006872 ORTHO05D006261 1.4e-09 67.0 91 42.9
Nitab4.5_0011425g0030 Nicotiana tabacum HOM05D006872 ORTHO05D006261 1.4e-09 67.0 94 44.7
Migut.L01821 Erythranthe guttata HOM05D006872 ORTHO05D006261 1.8e-09 66.6 85 43.5
Peaxi162Scf00078g00137 Petunia axillaris HOM05D007970 ORTHO05D009943 1.8e-09 66.6 86 43.0
MELO3C034691.2 Cucumis melo HOM05D007970 ORTHO05D009943 2.4e-09 66.2 112 40.2
Migut.B00057 Erythranthe guttata HOM05D007970 ORTHO05D009943 2.4e-09 66.2 101 37.6
Phvul.007G269600 Phaseolus vulgaris HOM05D006872 ORTHO05D006261 2.4e-09 66.2 110 39.1
CsaV3_6G040990 Cucumis sativus L. HOM05D006872 ORTHO05D006261 3.1e-09 65.9 106 41.5
AUR62037038 Chenopodium quinoa HOM05D006872 ORTHO05D006261 6.9e-09 64.7 103 41.7
SGA_v2.0_scaffold32G13308 Striga asiatica HOM05D007970 ORTHO05D009943 9.0e-09 64.3 106 37.7
EL10Ac7g16814 Beta vulgaris HOM05D006872 ORTHO05D006261 1.2e-08 63.9 105 41.0
TPR.G23353 Trifolium pratense HOM05D006872 ORTHO05D006261 1.2e-08 63.9 83 51.8
Haze_23331 Corylus avellana HOM05D021165 ORTHO05D006261 2.0e-08 63.2 97 38.1
ECA233G2821 Erigeron canadensis HOM05D001423 ORTHO05D001412 4.5e-08 62.0 75 45.3
HanXRQChr13g0398221 Helianthus annuus HOM05D006872 ORTHO05D006261 4.5e-08 62.0 61 52.5
QL01p011372 Quercus lobata HOM05D021165 ORTHO05D006261 9.9e-08 60.8 137 33.6
QL01p011630 Quercus lobata HOM05D021165 ORTHO05D006261 9.9e-08 60.8 137 33.6
Prupe.6G139500 Prunus persica HOM05D021165 ORTHO05D006261 1.3e-07 60.5 132 36.4
Sc18g0006290 Simmondsia chinensis HOM05D007970 ORTHO05D009943 1.3e-07 60.5 73 52.1
SGA_v2.0_scaffold195G40813 Striga asiatica HOM05D007970 ORTHO05D009943 1.3e-07 60.5 56 57.1
AUR62006268 Chenopodium quinoa HOM05D006872 ORTHO05D006261 2.2e-07 59.7 82 46.3
Migut.N01333 Erythranthe guttata HOM05D007970 ORTHO05D009943 2.2e-07 59.7 56 60.7
Glyma.10G078000 Glycine max HOM05D006872 ORTHO05D006261 2.2e-07 59.7 67 52.2
Nitab4.5_0000079g0240 Nicotiana tabacum HOM05D007970 ORTHO05D009943 2.2e-07 59.7 55 50.9
Nn1g08119 Nelumbo nucifera HOM05D006872 ORTHO05D006261 2.9e-07 59.3 87 40.2
SHI12280 Sapria himalayana HOM05D006872 ORTHO05D006261 3.8e-07 58.9 93 35.5
CDE11G0740 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 4.9e-07 58.5 67 46.3
DCAR_022819 Daucus carota HOM05D046813 ORTHO05D009943 4.9e-07 58.5 86 37.2
DCAR_022820 Daucus carota HOM05D046813 ORTHO05D009943 4.9e-07 58.5 86 37.2
SEGI_37168 Sequoiadendron giganteum HOM05D007970 ORTHO05D009943 4.9e-07 58.5 102 41.2
SGA_v2.0_scaffold58G20343 Striga asiatica HOM05D007970 ORTHO05D009943 4.9e-07 58.5 81 44.4
ATR0772G099 Amborella trichopoda HOM05D006872 ORTHO05D006261 6.4e-07 58.2 68 50.0
Lj9P400T40 Lonicera japonica HOM05D007970 ORTHO05D009943 6.4e-07 58.2 134 32.1
Sc20g0006630 Simmondsia chinensis HOM05D006872 ORTHO05D006261 6.4e-07 58.2 75 49.3
TPR.G18391 Trifolium pratense HOM05D006872 ORTHO05D006261 6.4e-07 58.2 148 31.8
BolC3t12855H Brassica oleracea HOM05D010494 ORTHO05D006261 1.9e-06 56.6 92 32.6
Thecc.09G276100 Theobroma cacao HOM05D006872 ORTHO05D006261 1.9e-06 56.6 117 35.0
BraA03t09629Z Brassica rapa HOM05D010494 ORTHO05D006261 2.4e-06 56.2 92 32.6
Manes.09G048400 Manihot esculenta HOM05D006872 ORTHO05D006261 2.4e-06 56.2 91 37.4
Thhalv10011026m.g Eutrema salsugineum HOM05D006872 ORTHO05D006261 3.2e-06 55.8 111 38.7
Ah.08g210170 Amaranthus hybridus HOM05D006872 ORTHO05D006261 4.2e-06 55.5 56 50.0
SalBow1G1487 Salvia bowleyana HOM05D001517 ORTHO05D001424 4.2e-06 55.5 43 58.1
C03p03070 Brassica napus HOM05D010494 ORTHO05D006261 5.5e-06 55.1 92 32.6
BcaB01g05730 Brassica carinata HOM05D010494 ORTHO05D006261 7.1e-06 54.7 90 32.2
A03p02670 Brassica napus HOM05D010494 ORTHO05D006261 9.3e-06 54.3 92 32.6


User provided reference genes

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