Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30835 Nelumbo nucifera HOM05D000002 ORTHO05D276682 7.7e-24 112.8 52 100.0
SHI20117 Sapria himalayana HOM05D000002 ORTHO05D000001 7.7e-08 59.7 38 57.9
SHI34386 Sapria himalayana HOM05D000002 ORTHO05D000001 1.7e-07 58.5 38 57.9
RcHm_v2.0_Chr4g0394001 Rosa chinensis HOM05D000002 ORTHO05D000001 6.5e-07 56.6 46 50.0
RcHm_v2.0_Chr2g0166521 Rosa chinensis HOM05D000002 ORTHO05D000001 8.5e-07 56.2 46 47.8
RcHm_v2.0_Chr1g0365931 Rosa chinensis HOM05D000002 ORTHO05D000001 1.1e-06 55.8 46 47.8
RcHm_v2.0_Chr4g0418881 Rosa chinensis HOM05D000002 ORTHO05D000001 1.5e-06 55.5 37 62.2
TPR.G16933 Trifolium pratense HOM05D000002 ORTHO05D000001 1.5e-06 55.5 44 50.0
RcHm_v2.0_Chr1g0383501 Rosa chinensis HOM05D000002 ORTHO05D000001 1.9e-06 55.1 41 51.2
TPR.G33362 Trifolium pratense HOM05D000002 ORTHO05D000001 1.9e-06 55.1 35 62.9
TPR.G39442 Trifolium pratense HOM05D000002 ORTHO05D000001 1.9e-06 55.1 44 50.0
FvH4_6g30872 Fragaria vesca HOM05D000002 ORTHO05D000001 2.5e-06 54.7 38 57.9
RcHm_v2.0_Chr1g0320771 Rosa chinensis HOM05D000002 ORTHO05D000001 2.5e-06 54.7 36 58.3
SHI11026 Sapria himalayana HOM05D000002 ORTHO05D000001 2.5e-06 54.7 38 55.3
FvH4_3g38851 Fragaria vesca HOM05D000002 ORTHO05D000001 3.2e-06 54.3 36 58.3
MD11G1107300 Malus domestica HOM05D000002 ORTHO05D000001 3.2e-06 54.3 46 45.7
PSO765G0122 Papaver somniferum HOM05D000002 ORTHO05D000001 3.2e-06 54.3 40 55.0
TPR.G27164 Trifolium pratense HOM05D000002 ORTHO05D000001 3.2e-06 54.3 46 45.7
FvH4_2g08111 Fragaria vesca HOM05D000002 ORTHO05D000001 5.5e-06 53.5 38 50.0
FvH4_2g20842 Fragaria vesca HOM05D000002 ORTHO05D000001 5.5e-06 53.5 39 51.3
FvH4_3g00831 Fragaria vesca HOM05D000002 ORTHO05D000001 5.5e-06 53.5 39 51.3
FvH4_4g00981 Fragaria vesca HOM05D000002 ORTHO05D000001 5.5e-06 53.5 38 50.0
Lalb_Chr14g0369271 Lupinus albus HOM05D000002 ORTHO05D000001 5.5e-06 53.5 41 56.1
QL02p049914 Quercus lobata HOM05D000002 ORTHO05D000001 5.5e-06 53.5 35 57.1
VMungo0720G1395 Vigna mungo HOM05D000002 ORTHO05D000001 5.5e-06 53.5 34 61.8
FvH4_2g23401 Fragaria vesca HOM05D000002 ORTHO05D000001 7.2e-06 53.1 36 55.6
FvH4_4g13391 Fragaria vesca HOM05D000002 ORTHO05D000001 7.2e-06 53.1 36 55.6
PSO063G0208 Papaver somniferum HOM05D000002 ORTHO05D000001 7.2e-06 53.1 40 55.0
PSO079G0032 Papaver somniferum HOM05D000002 ORTHO05D000001 7.2e-06 53.1 40 55.0
PSO478G4448 Papaver somniferum HOM05D000002 ORTHO05D000001 7.2e-06 53.1 40 55.0
CSS0016756 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.5e-06 52.8 35 57.1
CSS0018358 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.5e-06 52.8 35 57.1
CANSAT50G0007 Cannabis sativa HOM05D000002 ORTHO05D000001 9.5e-06 52.8 41 51.2
MD01G1096500 Malus domestica HOM05D000002 ORTHO05D000001 9.5e-06 52.8 46 45.7
Sopen06g034290 Solanum pennellii HOM05D000002 ORTHO05D000001 9.5e-06 52.8 47 46.8


User provided reference genes

Program Settings