Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30827 Nelumbo nucifera HOM05D007821 ORTHO05D009897 5.1e-72 274.2 133 100.0
Duzib147G1309 Durio zibethinus HOM05D007821 ORTHO05D009897 5.7e-47 191.0 133 69.2
Gohir.D11G179200 Gossypium hirsutum HOM05D007821 ORTHO05D009897 5.3e-45 184.5 133 67.7
Gorai.007G191100 Gossypium raimondii HOM05D007821 ORTHO05D009897 5.3e-45 184.5 133 67.7
Thecc.01G012400 Theobroma cacao HOM05D007821 ORTHO05D009897 9.1e-45 183.7 134 67.9
Cfa007023 Carpinus fangiana HOM05D007821 ORTHO05D009897 3.5e-44 181.8 129 65.9
COL.COLO4_22487 Corchorus olitorius HOM05D007821 ORTHO05D009897 4.5e-44 181.4 135 67.4
Gohir.A11G172200 Gossypium hirsutum HOM05D007821 ORTHO05D009897 5.0e-43 177.9 133 65.4
Gohir.D10G089100 Gossypium hirsutum HOM05D007821 ORTHO05D009897 1.4e-42 176.4 133 66.2
Gorai.011G098000 Gossypium raimondii HOM05D007821 ORTHO05D009897 1.4e-42 176.4 133 66.2
Sabra05G0089000 Salix brachista HOM05D006929 ORTHO05D008646 1.9e-42 176.0 133 66.2
CiPaw.07G062800 Carya illinoinensis HOM05D007821 ORTHO05D009897 2.5e-42 175.6 128 65.6
Gohir.A10G099000 Gossypium hirsutum HOM05D007821 ORTHO05D009897 2.5e-42 175.6 133 66.2
Dinv40139 Davidia involucrata HOM05D007821 ORTHO05D009897 5.5e-42 174.5 135 65.2
Ciclev10026734m.g Citrus clementina HOM05D007821 ORTHO05D009897 2.7e-41 172.2 139 63.3
QL06p051907 Quercus lobata HOM05D007821 ORTHO05D009897 2.7e-41 172.2 133 63.9
Manes.02G109600 Manihot esculenta HOM05D007821 ORTHO05D009897 3.6e-41 171.8 133 65.4
Hma1.2p1_0315F.1_g122510 Hydrangea macrophylla HOM05D007821 ORTHO05D009897 4.7e-41 171.4 135 63.7
Potri.005G108633 Populus trichocarpa HOM05D007821 ORTHO05D009897 4.7e-41 171.4 133 64.7
TAR376G1238 Trochodendron aralioides HOM05D007821 ORTHO05D009897 4.7e-41 171.4 133 63.9
Aqoxy6G02053 Aquilegia oxysepala HOM05D007821 ORTHO05D009897 7.4e-39 164.1 137 59.9
RcHm_v2.0_Chr2g0098471 Rosa chinensis HOM05D007821 ORTHO05D009897 4.8e-38 161.4 138 63.0
FvH4_1g11180 Fragaria vesca HOM05D007821 ORTHO05D009897 2.4e-37 159.1 138 61.6
FAN19G2165 Fragaria x ananassa HOM05D007821 ORTHO05D009897 2.4e-37 159.1 138 61.6
FAN28G2391 Fragaria x ananassa HOM05D007821 ORTHO05D009897 3.1e-37 158.7 138 61.6
Lj4g0018241 Lotus japonicus HOM05D007821 ORTHO05D009897 3.1e-37 158.7 135 59.3
Prupe.7G174100 Prunus persica HOM05D007821 ORTHO05D009897 3.1e-37 158.7 131 64.1
PSO675G1463 Papaver somniferum HOM05D007821 ORTHO05D009897 7.0e-37 157.5 140 59.3
Phvul.003G266700 Phaseolus vulgaris HOM05D007821 ORTHO05D009897 9.1e-37 157.1 133 59.4
TWI73G0676 Tripterygium wilfordii HOM05D007821 ORTHO05D009897 2.0e-36 156.0 137 61.3
FAN23G1973 Fragaria x ananassa HOM05D007821 ORTHO05D009897 2.6e-36 155.6 138 60.9
Psat4g102440 Pisum sativum HOM05D007821 ORTHO05D009897 3.8e-35 151.8 134 56.7
DCAR_011577 Daucus carota HOM05D007821 ORTHO05D009897 5.0e-35 151.4 125 58.4
MD15G1238300 Malus domestica HOM05D007821 ORTHO05D009897 3.2e-34 148.7 138 58.7
VMungo0251G0901 Vigna mungo HOM05D007821 ORTHO05D009897 1.2e-33 146.7 128 55.5
Glyma.02G044900 Glycine max HOM05D007821 ORTHO05D009897 1.6e-33 146.4 129 55.8
Glyma.16G122400 Glycine max HOM05D007821 ORTHO05D009897 8.0e-33 144.1 129 55.0
Medtr8g075000 Medicago truncatula HOM05D007821 ORTHO05D009897 1.0e-32 143.7 146 52.1
Medtr8g075080 Medicago truncatula HOM05D007821 ORTHO05D009897 1.0e-32 143.7 146 52.1
PSO541G0785 Papaver somniferum HOM05D007821 ORTHO05D009897 1.0e-32 143.7 139 56.8
MD02G1124300 Malus domestica HOM05D007821 ORTHO05D009897 1.4e-32 143.3 138 58.0
Cc07_g11250 Coffea canephora HOM05D007821 ORTHO05D009897 3.0e-32 142.1 136 53.7
arahy.Tifrunner.gnm1.ann1.B80PS6 Arachis hypogaea HOM05D007821 ORTHO05D009897 5.2e-32 141.4 109 60.6
PGR119G1098 Punica granatum HOM05D007821 ORTHO05D009897 5.2e-32 141.4 131 55.7
Actinidia35672 Actinidia chinensis HOM05D007821 ORTHO05D009897 6.8e-32 141.0 138 56.5
arahy.Tifrunner.gnm1.ann1.F8FFU1 Arachis hypogaea HOM05D007821 ORTHO05D009897 2.6e-31 139.0 135 54.1
CsaV3_6G047470 Cucumis sativus L. HOM05D007821 ORTHO05D009897 2.6e-31 139.0 134 54.5
Oeu039727.1 Olea europaea HOM05D007821 ORTHO05D009897 5.7e-31 137.9 136 52.9
MELO3C033032.2 Cucumis melo HOM05D007821 ORTHO05D009897 9.7e-31 137.1 134 53.7
Oeu012560.1 Olea europaea HOM05D007821 ORTHO05D009897 2.2e-30 136.0 131 54.2
TPR.G19477 Trifolium pratense HOM05D006929 ORTHO05D008646 2.2e-30 136.0 179 44.1
GSVIVG01006893001 Vitis vinifera HOM05D007821 ORTHO05D009897 2.2e-30 136.0 117 59.0
Peaxi162Scf00328g00213 Petunia axillaris HOM05D007821 ORTHO05D009897 3.8e-27 125.2 132 51.5
EL10Ac6g13327 Beta vulgaris HOM05D007821 ORTHO05D009897 8.5e-27 124.0 124 55.6
Atru.chr3.889 Acer truncatum HOM05D007821 ORTHO05D009897 1.9e-26 122.9 124 53.2
Atru.chr3.899 Acer truncatum HOM05D007821 ORTHO05D009897 1.9e-26 122.9 124 53.2
CANSAT01G0454 Cannabis sativa HOM05D007821 ORTHO05D009897 2.5e-26 122.5 146 53.4
Nitab4.5_0006899g0050 Nicotiana tabacum HOM05D007821 ORTHO05D009897 7.2e-26 120.9 131 50.4
Sed0025726 Sechium edule HOM05D007821 ORTHO05D009897 9.4e-26 120.6 120 54.2
Sopen02g028230 Solanum pennellii HOM05D007821 ORTHO05D009897 1.2e-25 120.2 133 49.6
Solyc02g083440.3 Solanum lycopersicum HOM05D007821 ORTHO05D009897 4.7e-25 118.2 133 49.6
PGSC0003DMG400003657 Solanum tuberosum HOM05D007821 ORTHO05D009897 4.7e-25 118.2 133 49.6
Nitab4.5_0016722g0010 Nicotiana tabacum HOM05D007821 ORTHO05D009897 4.0e-24 115.2 131 48.9
AUR62026232 Chenopodium quinoa HOM05D007821 ORTHO05D009897 8.8e-24 114.0 119 49.6
CAN.G890.37 Capsicum annuum HOM05D007821 ORTHO05D009897 1.5e-23 113.2 105 56.2
AUR62026417 Chenopodium quinoa HOM05D007821 ORTHO05D009897 1.5e-23 113.2 111 54.1
Eucgr.I02312 Eucalyptus grandis HOM05D007821 ORTHO05D009897 4.4e-23 111.7 140 45.7
FAN26G1107 Fragaria x ananassa HOM05D007821 ORTHO05D009897 1.7e-19 99.8 103 55.3
Lalb_Chr09g0334261 Lupinus albus HOM05D007821 ORTHO05D009897 1.7e-19 99.8 83 60.2
Aa31sc1371G20 Aethionema arabicum HOM05D007821 ORTHO05D009897 2.1e-17 92.8 101 52.5
HanXRQChr15g0484781 Helianthus annuus HOM05D007821 ORTHO05D009897 2.0e-15 86.3 137 43.1
A01p23500 Brassica napus HOM05D007821 ORTHO05D009897 6.3e-14 81.3 99 45.5
BraA01t02257Z Brassica rapa HOM05D007821 ORTHO05D009897 6.3e-14 81.3 99 45.5
Carub.0005s1774 Capsella rubella HOM05D007821 ORTHO05D009897 6.3e-14 81.3 98 44.9
Sp5g10860 Schrenkiella parvula HOM05D007821 ORTHO05D009897 1.4e-13 80.1 99 47.5
AL5G31800 Arabidopsis lyrata HOM05D007821 ORTHO05D009897 1.8e-13 79.7 97 47.4
ECA246G2630 Erigeron canadensis HOM05D007821 ORTHO05D009897 3.2e-13 79.0 120 44.2
SEGI_40728 Sequoiadendron giganteum HOM05D001188 ORTHO05D001032 3.2e-13 79.0 92 50.0
C01p29170 Brassica napus HOM05D007821 ORTHO05D009897 5.4e-13 78.2 99 44.4
A09p44430 Brassica napus HOM05D007821 ORTHO05D009897 9.2e-13 77.4 97 47.4
BraA09t39902Z Brassica rapa HOM05D007821 ORTHO05D009897 9.2e-13 77.4 97 47.4
BolC1t02847H Brassica oleracea HOM05D007821 ORTHO05D009897 1.6e-12 76.6 99 44.4
BolC8t50278H Brassica oleracea HOM05D007821 ORTHO05D009897 1.6e-12 76.6 97 46.4
Mapoly0047s0036 Marchantia polymorpha HOM05D001188 ORTHO05D001032 4.5e-12 75.1 132 37.1
C08p26640 Brassica napus HOM05D007821 ORTHO05D009897 1.0e-11 73.9 97 45.4
Pp3c20_7460 Physcomitrium patens HOM05D001188 ORTHO05D001032 2.9e-11 72.4 91 42.9
Pp3c20_7510 Physcomitrium patens HOM05D001188 ORTHO05D001032 2.9e-11 72.4 91 42.9
Ah.03g137620 Amaranthus hybridus HOM05D001188 ORTHO05D001032 3.3e-10 68.9 106 38.7
C07p46290 Brassica napus HOM05D007821 ORTHO05D009897 1.2e-09 67.0 101 42.6
Rhsim08G0030600 Rhododendron simsii HOM05D007821 ORTHO05D009897 2.8e-09 65.9 59 55.9
COL.COLO4_24805 Corchorus olitorius HOM05D001188 ORTHO05D001032 3.6e-09 65.5 149 32.2
Duzib251G0580 Durio zibethinus HOM05D001188 ORTHO05D001032 6.1e-09 64.7 148 30.4
Nitab4.5_0000791g0120 Nicotiana tabacum HOM05D001188 ORTHO05D001032 1.0e-08 63.9 135 34.8
CAN.G610.80 Capsicum annuum HOM05D001188 ORTHO05D001032 3.1e-08 62.4 109 35.8
Dinv21083 Davidia involucrata HOM05D001188 ORTHO05D001032 3.1e-08 62.4 114 36.0
Nitab4.5_0003373g0040 Nicotiana tabacum HOM05D001188 ORTHO05D001032 3.1e-08 62.4 135 34.8
Dinv31636 Davidia involucrata HOM05D001188 ORTHO05D001032 4.0e-08 62.0 134 32.8
Duzib268G1413 Durio zibethinus HOM05D001188 ORTHO05D001032 4.0e-08 62.0 149 30.2
Rhsim10G0067000 Rhododendron simsii HOM05D001188 ORTHO05D001032 6.8e-08 61.2 81 39.5
SEGI_37570 Sequoiadendron giganteum HOM05D001188 ORTHO05D001032 6.8e-08 61.2 92 38.0
SGA_v2.0_scaffold36G14537 Striga asiatica HOM05D001188 ORTHO05D001032 6.8e-08 61.2 140 35.0
Manes.06G067600 Manihot esculenta HOM05D001188 ORTHO05D001032 8.9e-08 60.8 111 34.2
Gohir.A03G147000 Gossypium hirsutum HOM05D001188 ORTHO05D001032 1.2e-07 60.5 112 37.5
Manes.01G110300 Manihot esculenta HOM05D001188 ORTHO05D001032 1.2e-07 60.5 94 36.2
Pp3c14_18120 Physcomitrium patens HOM05D001188 ORTHO05D001032 1.2e-07 60.5 91 42.9
PGR044G0229 Punica granatum HOM05D001188 ORTHO05D001032 1.2e-07 60.5 105 41.9
Duzib248G1403 Durio zibethinus HOM05D001188 ORTHO05D001032 1.5e-07 60.1 142 30.3
Manes.01G011400 Manihot esculenta HOM05D001188 ORTHO05D001032 1.5e-07 60.1 109 35.8
Sabra17G0095000 Salix brachista HOM05D001188 ORTHO05D001032 2.6e-07 59.3 108 34.3
Gorai.005G190600 Gossypium raimondii HOM05D001188 ORTHO05D001032 3.4e-07 58.9 140 31.4
Potri.017G114700 Populus trichocarpa HOM05D001188 ORTHO05D001032 3.4e-07 58.9 108 33.3
Hund16155 Selenicereus undatus HOM05D001188 ORTHO05D001032 3.4e-07 58.9 109 37.6
arahy.Tifrunner.gnm1.ann1.Z3Y2S3 Arachis hypogaea HOM05D001188 ORTHO05D001032 4.4e-07 58.5 92 38.0
CANSAT80G0425 Cannabis sativa HOM05D001188 ORTHO05D001032 4.4e-07 58.5 85 38.8
CANSAT80G0467 Cannabis sativa HOM05D001188 ORTHO05D001032 4.4e-07 58.5 85 38.8
CSS0010207 Camellia sinensis var. sinensis HOM05D001188 ORTHO05D001032 7.5e-07 57.8 88 38.6
Lj6A758T16 Lonicera japonica HOM05D001188 ORTHO05D001032 7.5e-07 57.8 108 33.3
MBI16_g35167_MAGBIO Magnolia biondii HOM05D001188 ORTHO05D001032 7.5e-07 57.8 106 39.6
Dinv34823 Davidia involucrata HOM05D001188 ORTHO05D001032 9.8e-07 57.4 107 36.4
Thecc.04G134100 Theobroma cacao HOM05D001188 ORTHO05D001032 9.8e-07 57.4 98 37.8
arahy.Tifrunner.gnm1.ann1.LU8TWQ Arachis hypogaea HOM05D001188 ORTHO05D001032 1.3e-06 57.0 92 37.0
DCAR_026733 Daucus carota HOM05D001188 ORTHO05D001032 1.3e-06 57.0 94 37.2
Lj3C1014T9 Lonicera japonica HOM05D001188 ORTHO05D001032 1.3e-06 57.0 112 33.0
Actinidia35089 Actinidia chinensis HOM05D001188 ORTHO05D001032 1.7e-06 56.6 118 34.7
AUR62002861 Chenopodium quinoa HOM05D001188 ORTHO05D001032 1.7e-06 56.6 88 37.5
Peaxi162Scf00382g00824 Petunia axillaris HOM05D001188 ORTHO05D001032 1.7e-06 56.6 107 33.6
GSVIVG01011892001 Vitis vinifera HOM05D001188 ORTHO05D001032 1.7e-06 56.6 108 37.0
ATR1125G036 Amborella trichopoda HOM05D001188 ORTHO05D001032 2.2e-06 56.2 108 36.1
CSS0008362 Camellia sinensis var. sinensis HOM05D001188 ORTHO05D001032 2.2e-06 56.2 118 29.7
CDE07G1812 Ceratophyllum demersum HOM05D001188 ORTHO05D001032 2.2e-06 56.2 127 33.9
Ciclev10012908m.g Citrus clementina HOM05D001188 ORTHO05D001032 2.2e-06 56.2 110 35.5
DCAR_007246 Daucus carota HOM05D001188 ORTHO05D001032 2.2e-06 56.2 109 35.8
Gohir.D02G170100 Gossypium hirsutum HOM05D001188 ORTHO05D001032 2.2e-06 56.2 140 30.0
Lalb_Chr02g0158221 Lupinus albus HOM05D001188 ORTHO05D001032 2.2e-06 56.2 84 36.9
TWI81G0189 Tripterygium wilfordii HOM05D001188 ORTHO05D001032 2.2e-06 56.2 97 33.0
GSVIVG01008289001 Vitis vinifera HOM05D001188 ORTHO05D001032 2.2e-06 56.2 77 39.0
DCAR_030157 Daucus carota HOM05D001188 ORTHO05D001032 2.9e-06 55.8 85 42.4
Duzib133G1375 Durio zibethinus HOM05D001188 ORTHO05D001032 2.9e-06 55.8 99 38.4
FvH4_5g12120 Fragaria vesca HOM05D001188 ORTHO05D001032 2.9e-06 55.8 86 39.5
FAN08G0058 Fragaria x ananassa HOM05D001188 ORTHO05D001032 2.9e-06 55.8 86 39.5
FAN13G2404 Fragaria x ananassa HOM05D001188 ORTHO05D001032 2.9e-06 55.8 86 39.5
Manes.05G137300 Manihot esculenta HOM05D001188 ORTHO05D001032 2.9e-06 55.8 96 37.5
Gohir.A11G163400 Gossypium hirsutum HOM05D001188 ORTHO05D001032 3.7e-06 55.5 111 35.1
Hma1.2p1_0653F.1_g196290 Hydrangea macrophylla HOM05D001188 ORTHO05D001032 3.7e-06 55.5 109 34.9
Potri.012G056500 Populus trichocarpa HOM05D001188 ORTHO05D001032 3.7e-06 55.5 108 31.5
Hund25061 Selenicereus undatus HOM05D001188 ORTHO05D001032 3.7e-06 55.5 123 35.0
TWI15G1206 Tripterygium wilfordii HOM05D001188 ORTHO05D001032 3.7e-06 55.5 83 36.1
vmacro17716 Vaccinium macrocarpon HOM05D001188 ORTHO05D001032 3.7e-06 55.5 102 35.3
vmacro23366 Vaccinium macrocarpon HOM05D001188 ORTHO05D001032 3.7e-06 55.5 102 35.3
Ca_13733_v3 Cicer arietinum L. HOM05D001188 ORTHO05D001032 4.9e-06 55.1 95 35.8
RcHm_v2.0_Chr7g0185461 Rosa chinensis HOM05D001188 ORTHO05D001032 4.9e-06 55.1 86 39.5
CDE06G1178 Ceratophyllum demersum HOM05D001188 ORTHO05D001032 6.4e-06 54.7 97 39.2
Dinv28104 Davidia involucrata HOM05D001188 ORTHO05D001032 6.4e-06 54.7 101 34.7
ECA240G2122 Erigeron canadensis HOM05D001188 ORTHO05D001032 6.4e-06 54.7 118 33.1
Gohir.D06G049000 Gossypium hirsutum HOM05D001188 ORTHO05D001032 6.4e-06 54.7 85 38.8
Gorai.010G055500 Gossypium raimondii HOM05D001188 ORTHO05D001032 6.4e-06 54.7 85 38.8
MBI10_g16030_MAGBIO Magnolia biondii HOM05D001188 ORTHO05D001032 6.4e-06 54.7 80 38.8
CiPaw.04G042000 Carya illinoinensis HOM05D001188 ORTHO05D001032 8.3e-06 54.3 107 35.5
Manes.14G102800 Manihot esculenta HOM05D001188 ORTHO05D001032 8.3e-06 54.3 111 33.3


User provided reference genes

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