Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 1.1e-92 344.0 272 100.0
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 8.0e-72 274.6 266 89.1
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 8.0e-72 274.6 266 88.3
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.2e-70 270.8 266 88.3
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 1.1e-68 264.2 267 84.3
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 4.5e-67 258.8 275 83.6
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 5.9e-67 258.5 268 84.0
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 2.3e-66 256.5 263 85.9
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 2.9e-66 256.1 268 83.2
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 5.0e-66 255.4 266 84.6
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 1.9e-65 253.4 268 84.0
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 3.3e-65 252.7 252 86.5
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 5.6e-65 251.9 270 82.6
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 5.6e-65 251.9 266 83.8
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 1.6e-64 250.4 264 84.1
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.6e-64 250.4 264 84.1
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.6e-64 250.4 264 84.1
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 2.1e-64 250.0 269 82.5
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 4.7e-64 248.8 264 83.3
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 6.1e-64 248.4 274 83.2
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 6.1e-64 248.4 272 83.1
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 6.1e-64 248.4 272 83.1
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 1.0e-63 247.7 266 83.8
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 1.0e-63 247.7 257 86.0
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 1.0e-63 247.7 257 86.0
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 1.0e-63 247.7 266 83.1
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 1.0e-63 247.7 271 82.3
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 1.4e-63 247.3 269 82.9
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 1.4e-63 247.3 266 83.5
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 1.8e-63 246.9 274 82.8
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 1.8e-63 246.9 274 76.3
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 1.8e-63 246.9 271 82.7
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 1.8e-63 246.9 248 87.9
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 3.0e-63 246.1 272 82.4
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 4.0e-63 245.7 269 72.5
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 4.0e-63 245.7 267 83.5
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 5.2e-63 245.4 270 84.1
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 5.2e-63 245.4 270 84.1
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 5.2e-63 245.4 266 82.3
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 5.2e-63 245.4 274 78.5
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 8.9e-63 244.6 265 83.8
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 8.9e-63 244.6 272 82.4
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 8.9e-63 244.6 272 82.4
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.2e-62 244.2 273 82.8
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.2e-62 244.2 273 82.8
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.0e-62 243.4 272 82.4
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 2.6e-62 243.0 272 82.0
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 3.4e-62 242.7 252 86.9
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 4.4e-62 242.3 252 86.1
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 4.4e-62 242.3 272 82.7
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 4.4e-62 242.3 252 86.1
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 3.7e-61 239.2 272 82.0
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 1.4e-60 237.3 252 85.3
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 1.4e-60 237.3 252 85.7
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 3.2e-60 236.1 273 80.6
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 4.1e-60 235.7 267 83.5
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 7.0e-60 235.0 257 84.4
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 9.2e-60 234.6 274 81.4
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 2.7e-59 233.0 253 85.0
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.0e-58 231.1 266 80.1
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 2.3e-58 229.9 251 82.1
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 6.6e-58 228.4 272 77.6
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.1e-57 227.6 253 83.0
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.1e-57 227.6 266 78.9
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 1.5e-57 227.3 266 78.6
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 1.9e-57 226.9 253 82.6
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 3.3e-57 226.1 270 80.0
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 4.3e-57 225.7 274 79.6
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 7.3e-57 224.9 250 83.6
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 7.3e-57 224.9 255 82.0
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 9.5e-57 224.6 271 77.9
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 1.2e-56 224.2 254 81.9
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 1.2e-56 224.2 266 78.6
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.6e-56 223.8 252 81.3
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 1.6e-56 223.8 252 81.0
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 2.1e-56 223.4 256 82.4
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 2.8e-56 223.0 262 79.4
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 3.6e-56 222.6 251 82.5
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 4.7e-56 222.2 267 80.9
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 4.7e-56 222.2 265 81.1
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 6.2e-56 221.9 253 82.2
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 6.2e-56 221.9 243 86.0
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 8.0e-56 221.5 253 82.2
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 1.4e-55 220.7 253 82.2
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 1.4e-55 220.7 268 79.5
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 1.8e-55 220.3 270 78.1
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 1.8e-55 220.3 250 83.6
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 2.3e-55 219.9 257 80.5
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 3.1e-55 219.5 252 82.5
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 4.0e-55 219.2 254 82.7
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 4.0e-55 219.2 254 82.7
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 4.0e-55 219.2 254 82.7
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 4.0e-55 219.2 254 82.7
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 4.0e-55 219.2 272 77.2
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 5.2e-55 218.8 254 82.3
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 6.8e-55 218.4 255 77.6
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 8.9e-55 218.0 255 81.2
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 1.5e-54 217.2 253 81.4
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 2.0e-54 216.9 254 82.3
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 2.0e-54 216.9 269 77.7
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 2.0e-54 216.9 269 77.0
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 2.0e-54 216.9 262 79.0
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 2.6e-54 216.5 255 80.4
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 3.4e-54 216.1 269 77.7
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 4.4e-54 215.7 273 75.8
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 4.4e-54 215.7 269 77.7
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 4.4e-54 215.7 269 77.7
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 4.4e-54 215.7 246 84.6
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 5.8e-54 215.3 255 74.5
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 7.5e-54 214.9 255 80.4
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 9.8e-54 214.5 268 78.0
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 1.3e-53 214.2 269 77.3
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 8.3e-53 211.5 277 50.9
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 1.4e-52 210.7 268 78.4
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 3.2e-52 209.5 250 79.2
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 3.2e-52 209.5 250 79.2
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 7.0e-52 208.4 276 76.8
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 1.2e-51 207.6 262 76.7
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 1.6e-51 207.2 269 75.8
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 7.8e-51 204.9 259 77.6
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 7.8e-51 204.9 273 76.2
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 1.0e-50 204.5 251 79.7
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 1.3e-50 204.1 247 81.8
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 5.0e-50 202.2 266 72.2
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 8.6e-50 201.4 230 86.5
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 1.5e-49 200.7 274 71.9
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 2.5e-49 199.9 266 75.2
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 5.6e-49 198.7 241 83.8
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 2.8e-48 196.4 262 69.1
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 3.6e-48 196.1 240 83.8
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.3e-47 193.4 235 84.3
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 5.2e-47 192.2 261 73.6
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 6.8e-47 191.8 226 85.4
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 2.6e-46 189.9 229 85.2
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.2e-45 186.8 276 40.2
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 2.9e-45 186.4 263 72.2
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 3.7e-45 186.0 257 77.0
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 3.7e-45 186.0 252 75.4
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 1.3e-42 177.6 251 74.1
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 9.5e-41 171.4 100 84.0
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 9.5e-41 171.4 233 80.7
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 2.3e-39 166.8 269 57.6
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 8.9e-39 164.9 213 83.1
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 6.6e-34 148.7 83 88.0
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 2.0e-30 137.1 211 78.2
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 7.6e-30 135.2 85 77.6
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 7.6e-30 135.2 100 66.0
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 1.3e-29 134.4 213 80.3
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 4.9e-29 132.5 274 64.2
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 1.1e-28 131.3 273 65.2
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 9.3e-28 128.3 253 57.7
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 8.1e-24 115.2 81 71.6
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 9.0e-23 111.7 83 68.7
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 2.0e-22 110.5 82 63.4
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 2.2e-21 107.1 86 65.1
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 4.5e-14 82.8 53 75.5
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 4.3e-09 66.2 242 57.4
ATR0730G160 Amborella trichopoda HOM05D004527 ORTHO05D005335 4.0e-07 59.7 65 47.7
HanXRQChr05g0162291 Helianthus annuus HOM05D004527 ORTHO05D005335 1.0e-05 55.1 65 47.7
Psat5g014720 Pisum sativum HOM05D002919 ORTHO05D003327 1.0e-05 55.1 90 34.4


User provided reference genes

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