Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30659 Nelumbo nucifera HOM05D006874 ORTHO05D008334 2.6e-228 795.0 407 100.0
Nn6g34522 Nelumbo nucifera HOM05D006874 ORTHO05D008334 6.3e-113 411.8 401 59.9
TAR628G0654 Trochodendron aralioides HOM05D006874 ORTHO05D008334 5.9e-103 378.6 397 58.7
MBI16_g45151_MAGBIO Magnolia biondii HOM05D006874 ORTHO05D008334 4.0e-67 259.6 401 42.9
Manes.05G183400 Manihot esculenta HOM05D006874 ORTHO05D008334 4.0e-67 259.6 400 43.2
Manes.18G049200 Manihot esculenta HOM05D006874 ORTHO05D008334 8.9e-67 258.5 386 42.7
QL12p038579 Quercus lobata HOM05D006874 ORTHO05D008334 7.5e-66 255.4 395 43.8
Aqoxy6G02484 Aquilegia oxysepala HOM05D006874 ORTHO05D008334 3.2e-64 250.0 407 43.7
Actinidia19297 Actinidia chinensis HOM05D006874 ORTHO05D008334 1.2e-63 248.1 394 43.4
Duzib116G0206 Durio zibethinus HOM05D006874 ORTHO05D008334 6.6e-62 242.3 392 42.9
Thecc.08G084900 Theobroma cacao HOM05D006874 ORTHO05D008334 7.3e-61 238.8 382 41.4
Duzib093G1642 Durio zibethinus HOM05D006874 ORTHO05D008334 9.5e-61 238.4 397 41.1
Dinv39206 Davidia involucrata HOM05D006874 ORTHO05D008334 4.0e-59 233.0 394 39.6
Cfa013741 Carpinus fangiana HOM05D006874 ORTHO05D008334 2.0e-58 230.7 386 43.8
TWI56G0226 Tripterygium wilfordii HOM05D006874 ORTHO05D008334 3.0e-54 216.9 382 39.0
PSO541G5864 Papaver somniferum HOM05D006874 ORTHO05D008334 6.2e-52 209.1 422 40.8
PSO675G5853 Papaver somniferum HOM05D006874 ORTHO05D008334 9.9e-50 201.8 420 40.5
Dinv09539 Davidia involucrata HOM05D006874 ORTHO05D008334 3.7e-49 199.9 396 37.6
Potri.014G013200 Populus trichocarpa HOM05D006874 ORTHO05D008334 1.1e-48 198.4 379 38.8
Eucgr.F02227 Eucalyptus grandis HOM05D006874 ORTHO05D008334 2.4e-48 197.2 402 35.1
MBI16_g41242_MAGBIO Magnolia biondii HOM05D006874 ORTHO05D008334 1.7e-46 191.0 285 43.5
Haze_22393 Corylus avellana HOM05D006874 ORTHO05D008334 1.5e-45 188.0 393 38.7
Haze_22401 Corylus avellana HOM05D006874 ORTHO05D008334 1.5e-45 188.0 393 38.7
MSTRG.24387 Avicennia marina HOM05D006874 ORTHO05D008334 1.9e-45 187.6 378 36.5
vmacro21419 Vaccinium macrocarpon HOM05D006874 ORTHO05D008334 3.3e-45 186.8 393 36.6
Actinidia10219 Actinidia chinensis HOM05D006874 ORTHO05D008334 4.3e-45 186.4 392 38.3
ATR0739G189 Amborella trichopoda HOM05D006874 ORTHO05D008334 2.8e-44 183.7 366 39.3
Sabra14G0008000 Salix brachista HOM05D006874 ORTHO05D008334 3.6e-44 183.3 364 37.4
Potri.002G115600 Populus trichocarpa HOM05D006874 ORTHO05D008334 4.7e-44 183.0 382 35.3
Rhsim06G0064400 Rhododendron simsii HOM05D006874 ORTHO05D008334 4.7e-44 183.0 397 38.8
Oeu053642.1 Olea europaea HOM05D006874 ORTHO05D008334 4.0e-43 179.9 386 35.2
Prupe.1G419500 Prunus persica HOM05D006874 ORTHO05D008334 2.2e-41 174.1 367 36.8
RcHm_v2.0_Chr6g0309981 Rosa chinensis HOM05D006874 ORTHO05D008334 3.8e-41 173.3 400 34.8
Ciclev10016010m.g Citrus clementina HOM05D006874 ORTHO05D008334 4.9e-41 172.9 397 34.5
Gorai.009G221900 Gossypium raimondii HOM05D006874 ORTHO05D008334 4.2e-40 169.9 401 34.9
Cc10_g07600 Coffea canephora HOM05D006874 ORTHO05D008334 2.1e-39 167.5 385 34.3
Gohir.D05G215200 Gossypium hirsutum HOM05D006874 ORTHO05D008334 4.6e-39 166.4 398 34.4
Nitab4.5_0002796g0010 Nicotiana tabacum HOM05D006874 ORTHO05D008334 6.0e-39 166.0 390 35.6
Gohir.A05G211900 Gossypium hirsutum HOM05D006874 ORTHO05D008334 1.0e-38 165.2 398 34.7
MD08G1078600 Malus domestica HOM05D006874 ORTHO05D008334 1.7e-38 164.5 395 36.5
PGR031G0049 Punica granatum HOM05D006874 ORTHO05D008334 3.3e-37 160.2 401 32.2
EL10Ac1g02352 Beta vulgaris HOM05D006874 ORTHO05D008334 6.2e-36 156.0 404 34.4
Atru.chr13.867 Acer truncatum HOM05D006874 ORTHO05D008334 1.4e-35 154.8 334 38.3
FAN15G0895 Fragaria x ananassa HOM05D006874 ORTHO05D008334 2.4e-35 154.1 399 35.3
Nitab4.5_0001426g0040 Nicotiana tabacum HOM05D006874 ORTHO05D008334 2.4e-35 154.1 377 35.3
Potri.009G085500 Populus trichocarpa HOM05D006874 ORTHO05D008334 3.1e-35 153.7 389 34.7
Potri.001G290000 Populus trichocarpa HOM05D006874 ORTHO05D008334 4.0e-35 153.3 386 32.1
Cfa004701 Carpinus fangiana HOM05D006874 ORTHO05D008334 1.5e-34 151.4 390 34.9
FAN27G0759 Fragaria x ananassa HOM05D006874 ORTHO05D008334 4.4e-34 149.8 399 34.6
FvH4_2g32690 Fragaria vesca HOM05D006874 ORTHO05D008334 5.8e-34 149.4 402 34.8
TAR625G1551 Trochodendron aralioides HOM05D006874 ORTHO05D008334 5.8e-34 149.4 142 57.7
Solyc04g077535.1 Solanum lycopersicum HOM05D006874 ORTHO05D008334 7.6e-34 149.1 385 30.9
CiPaw.07G172200 Carya illinoinensis HOM05D006874 ORTHO05D008334 2.9e-33 147.1 384 32.0
PGSC0003DMG400004918 Solanum tuberosum HOM05D006874 ORTHO05D008334 3.8e-33 146.7 386 30.8
AUR62035010 Chenopodium quinoa HOM05D006874 ORTHO05D008334 4.9e-33 146.4 403 33.0
Gorai.010G027100 Gossypium raimondii HOM05D006874 ORTHO05D008334 8.4e-33 145.6 389 34.2
Gohir.D06G022500 Gossypium hirsutum HOM05D006874 ORTHO05D008334 1.9e-32 144.4 389 33.9
Haze_10303 Corylus avellana HOM05D006874 ORTHO05D008334 3.2e-32 143.7 375 34.4
Gohir.A06G025400 Gossypium hirsutum HOM05D006874 ORTHO05D008334 3.2e-32 143.7 389 33.9
CANSAT25G0531 Cannabis sativa HOM05D006874 ORTHO05D008334 4.2e-32 143.3 399 31.6
MELO3C016836.2 Cucumis melo HOM05D006874 ORTHO05D008334 4.2e-32 143.3 383 34.2
Cpa.g.sc524.2 Carica papaya HOM05D006874 ORTHO05D008334 2.1e-31 141.0 391 30.4
AUR62037457 Chenopodium quinoa HOM05D006874 ORTHO05D008334 2.1e-31 141.0 401 31.9
Sabra16G0181500 Salix brachista HOM05D006874 ORTHO05D008334 2.1e-31 141.0 381 32.0
QL11p029345 Quercus lobata HOM05D006874 ORTHO05D008334 4.6e-31 139.8 376 33.5
FAN20G1691 Fragaria x ananassa HOM05D006874 ORTHO05D008334 6.0e-31 139.4 382 33.8
Lalb_Chr23g0267621 Lupinus albus HOM05D006874 ORTHO05D008334 6.0e-31 139.4 383 30.0
CSS0047478 Camellia sinensis var. sinensis HOM05D006874 ORTHO05D008334 1.0e-30 138.7 395 32.7
Dinv16069 Davidia involucrata HOM05D006874 ORTHO05D008334 1.0e-30 138.7 389 30.6
Hund05278 Selenicereus undatus HOM05D006874 ORTHO05D008334 1.0e-30 138.7 410 32.2
CiPaw.06G164000 Carya illinoinensis HOM05D006874 ORTHO05D008334 1.3e-30 138.3 393 32.3
CSS0007120 Camellia sinensis var. sinensis HOM05D006874 ORTHO05D008334 1.7e-30 137.9 395 32.7
CsaV3_4G035240 Cucumis sativus L. HOM05D006874 ORTHO05D008334 2.3e-30 137.5 385 34.5
Migut.C00474 Erythranthe guttata HOM05D006874 ORTHO05D008334 3.0e-30 137.1 380 31.3
TAR376G0413 Trochodendron aralioides HOM05D006874 ORTHO05D008334 3.9e-30 136.7 178 47.2
CSS0036555 Camellia sinensis var. sinensis HOM05D006874 ORTHO05D008334 1.5e-29 134.8 230 40.4
SalBow7G3254 Salvia bowleyana HOM05D006874 ORTHO05D008334 1.9e-29 134.4 375 29.3
Sabra02G0091300 Salix brachista HOM05D006874 ORTHO05D008334 7.3e-29 132.5 386 30.1
Medtr3g103400 Medicago truncatula HOM05D006874 ORTHO05D008334 9.6e-29 132.1 396 30.6
Glyma.17G233100 Glycine max HOM05D006874 ORTHO05D008334 8.1e-28 129.0 391 27.9
TPR.G13116 Trifolium pratense HOM05D006874 ORTHO05D008334 3.1e-27 127.1 394 29.7
ClCG05G026570 Citrullus lanatus HOM05D006874 ORTHO05D008334 9.0e-27 125.6 384 32.0
Glyma.06G048600 Glycine max HOM05D006874 ORTHO05D008334 5.8e-26 122.9 414 30.9
Ca_15889_v3 Cicer arietinum L. HOM05D006874 ORTHO05D008334 1.7e-25 121.3 395 29.4
Lj1g0014879 Lotus japonicus HOM05D006874 ORTHO05D008334 1.7e-25 121.3 389 29.0
VMungo1309G0435 Vigna mungo HOM05D006874 ORTHO05D008334 1.7e-25 121.3 398 28.6
MSTRG.25026 Avicennia marina HOM05D006874 ORTHO05D008334 2.2e-25 120.9 259 34.7
Manes.07G056800 Manihot esculenta HOM05D006874 ORTHO05D008334 2.9e-25 120.6 381 31.5
Sc15g0005390 Simmondsia chinensis HOM05D006874 ORTHO05D008334 2.9e-25 120.6 386 29.5
Sed0017147 Sechium edule HOM05D006874 ORTHO05D008334 4.9e-25 119.8 383 30.5
Glyma.14G089075 Glycine max HOM05D006874 ORTHO05D008334 6.4e-25 119.4 391 28.4
Actinidia00356 Actinidia chinensis HOM05D006874 ORTHO05D008334 2.4e-24 117.5 249 37.3
Psat0s1031g0080 Pisum sativum HOM05D006874 ORTHO05D008334 2.4e-24 117.5 385 31.9
Phvul.001G029700 Phaseolus vulgaris HOM05D006874 ORTHO05D008334 4.2e-24 116.7 391 28.6
Medtr1g017530 Medicago truncatula HOM05D006874 ORTHO05D008334 9.3e-24 115.5 400 27.8
Psat5g037000 Pisum sativum HOM05D006874 ORTHO05D008334 3.5e-23 113.6 382 29.8
Hma1.2p1_1170F.1_g263450 Hydrangea macrophylla HOM05D006874 ORTHO05D008334 1.8e-22 111.3 121 48.8
MD15G1065400 Malus domestica HOM05D006874 ORTHO05D008334 2.3e-22 110.9 203 38.9
Phvul.009G073900 Phaseolus vulgaris HOM05D006874 ORTHO05D008334 6.7e-22 109.4 402 28.6
Cpa.g.sc91.58 Carica papaya HOM05D016697 ORTHO05D018163 8.7e-22 109.0 392 27.3
FAN24G0724 Fragaria x ananassa HOM05D006874 ORTHO05D008334 9.6e-21 105.5 174 40.8
VMungo0647G0698 Vigna mungo HOM05D006874 ORTHO05D008334 1.3e-20 105.1 389 27.8
Sopen04g031160 Solanum pennellii HOM05D006874 ORTHO05D008334 4.8e-20 103.2 309 29.1
DCAR_020062 Daucus carota HOM05D006874 ORTHO05D008334 4.0e-19 100.1 395 29.4
CDE02G2198 Ceratophyllum demersum HOM05D006874 ORTHO05D008334 1.5e-18 98.2 386 29.5
SGA_v2.0_scaffold14G07085 Striga asiatica HOM05D000285 ORTHO05D000241 2.0e-18 97.8 115 43.5
Psat6g017400 Pisum sativum HOM05D006874 ORTHO05D008334 3.8e-17 93.6 390 25.6
Gorai.002G136000 Gossypium raimondii HOM05D006874 ORTHO05D008334 9.3e-16 89.0 397 27.7
Lj5g0027457 Lotus japonicus HOM05D006874 ORTHO05D008334 1.6e-15 88.2 404 28.5
Thecc.02G119800 Theobroma cacao HOM05D016697 ORTHO05D018163 1.6e-15 88.2 401 27.4
Gohir.A01G123500 Gossypium hirsutum HOM05D006874 ORTHO05D008334 3.5e-15 87.0 397 27.0
Ciclev10030239m.g Citrus clementina HOM05D006874 ORTHO05D008334 7.9e-15 85.9 135 37.8
COL.COLO4_28465 Corchorus olitorius HOM05D006874 ORTHO05D008334 1.3e-14 85.1 190 38.4
TAR625G0319 Trochodendron aralioides HOM05D006874 ORTHO05D008334 2.3e-14 84.3 130 41.5
COL.COLO4_32486 Corchorus olitorius HOM05D016697 ORTHO05D018163 9.6e-13 79.0 394 26.1
RhsimUnG0041100 Rhododendron simsii HOM05D063883 ORTHO05D008334 1.3e-12 78.6 227 36.6
RhsimUnG0123100 Rhododendron simsii HOM05D063883 ORTHO05D008334 1.3e-12 78.6 227 36.6
Lj2g0008576 Lotus japonicus HOM05D023496 ORTHO05D025628 2.1e-12 77.8 395 28.1
arahy.Tifrunner.gnm1.ann1.0IC8QA Arachis hypogaea HOM05D006874 ORTHO05D008334 5.8e-10 69.7 291 29.6
Gohir.D01G111300 Gossypium hirsutum HOM05D006874 ORTHO05D008334 1.3e-06 58.5 394 24.9
arahy.Tifrunner.gnm1.ann1.WJQ75P Arachis hypogaea HOM05D006874 ORTHO05D008334 2.3e-06 57.8 157 30.6
VMungo1215G3202 Vigna mungo HOM05D023496 ORTHO05D025628 2.3e-06 57.8 391 25.1


User provided reference genes

Program Settings