Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 2.1e-230 802.0 395 100.0
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 1.9e-183 646.0 397 80.4
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 7.5e-180 634.0 394 78.2
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 7.1e-178 627.5 396 79.0
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 1.9e-175 619.4 441 71.9
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 2.8e-174 615.5 396 77.0
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 3.1e-173 612.1 411 76.4
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 2.0e-172 609.4 397 76.6
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 5.8e-172 607.8 398 76.9
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 2.2e-171 605.9 399 76.2
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 6.4e-171 604.4 392 76.5
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 6.4e-171 604.4 396 76.0
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.1e-170 603.6 396 75.5
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.1e-170 603.6 396 75.5
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 1.1e-170 603.6 398 75.9
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 5.4e-170 601.3 388 78.1
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.0e-168 597.0 396 74.7
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 3.0e-168 595.5 397 75.6
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 5.1e-168 594.7 396 75.5
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 6.6e-168 594.3 413 74.8
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 8.7e-168 594.0 396 74.5
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 1.2e-166 590.1 396 73.7
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 1.6e-166 589.7 396 75.8
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 3.6e-166 588.6 396 75.3
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 4.7e-166 588.2 398 73.1
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 1.4e-165 586.6 399 74.4
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 1.8e-165 586.3 396 74.0
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 9.0e-165 583.9 399 75.2
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 4.4e-164 581.6 398 74.9
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 4.4e-164 581.6 397 74.6
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 4.4e-164 581.6 390 75.1
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 4.4e-164 581.6 396 73.5
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 4.9e-163 578.2 397 72.3
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 8.4e-163 577.4 396 73.2
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 1.1e-162 577.0 396 73.0
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.1e-162 577.0 399 74.2
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 4.2e-162 575.1 396 72.0
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 9.3e-162 573.9 397 72.3
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 1.2e-161 573.5 396 72.5
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 1.6e-161 573.2 386 73.6
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.6e-161 573.2 391 75.2
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 4.6e-161 571.6 413 72.2
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.3e-160 570.1 396 72.2
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 1.3e-160 570.1 388 73.5
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.7e-160 569.7 396 72.0
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 1.7e-160 569.7 399 73.2
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 1.7e-160 569.7 398 73.6
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 2.3e-160 569.3 398 70.6
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 3.0e-160 568.9 424 70.0
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 3.9e-160 568.5 399 71.9
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 6.6e-160 567.8 397 72.8
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 5.6e-159 564.7 425 68.9
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 5.6e-159 564.7 397 70.5
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 1.6e-158 563.1 390 73.1
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 4.0e-157 558.5 397 68.5
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 6.9e-157 557.8 388 73.5
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 1.5e-156 556.6 396 72.0
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 2.0e-156 556.2 392 71.4
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 4.5e-156 555.1 401 69.1
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 5.8e-156 554.7 397 70.8
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 1.7e-155 553.1 412 70.9
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 3.8e-155 552.0 423 66.7
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 6.4e-155 551.2 390 72.3
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 1.2e-153 547.0 398 68.3
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 1.2e-153 547.0 395 69.9
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 4.6e-153 545.0 403 69.0
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 4.6e-153 545.0 396 69.9
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 4.6e-153 545.0 398 69.1
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 3.0e-152 542.3 395 68.6
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 3.0e-152 542.3 395 68.9
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 2.5e-151 539.3 396 68.2
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 4.3e-151 538.5 395 68.6
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 2.1e-150 536.2 395 68.4
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 2.8e-150 535.8 395 67.8
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 3.7e-150 535.4 395 68.1
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 8.1e-150 534.3 395 67.8
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 9.0e-149 530.8 392 68.4
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 1.2e-148 530.4 397 67.5
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 2.2e-147 526.2 399 67.4
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 1.1e-146 523.9 388 68.0
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 1.1e-146 523.9 399 66.9
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.4e-146 523.5 357 73.9
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 4.6e-145 518.5 392 67.6
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 1.0e-144 517.3 398 67.6
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 1.8e-144 516.5 398 67.3
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.5e-143 512.7 396 66.7
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 1.2e-140 503.8 405 64.4
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 1.0e-139 500.7 395 64.1
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 8.4e-139 497.7 385 66.2
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 8.4e-139 497.7 311 80.1
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 1.1e-138 497.3 396 65.7
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 2.2e-134 483.0 396 61.6
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 6.9e-133 478.0 390 63.1
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 1.2e-132 477.2 390 63.1
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 2.6e-132 476.1 411 61.1
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.1e-130 470.7 430 57.9
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 3.9e-128 462.2 375 63.5
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 3.9e-128 462.2 393 60.8
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 3.1e-125 452.6 394 59.4
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 1.9e-122 443.4 393 59.0
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 3.2e-122 442.6 396 60.6
Lsat_1_v5_gn_1_56140 Lactuca sativa HOM05D001400 ORTHO05D001795 1.6e-121 440.3 387 60.2
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 4.7e-121 438.7 414 57.2
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 4.4e-119 432.2 395 57.7
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 1.1e-117 427.6 400 58.2
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 9.1e-117 424.5 270 77.0
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 5.7e-111 405.2 436 51.8
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 1.8e-101 373.6 307 61.9
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.6e-100 370.5 426 49.3
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 7.7e-100 368.2 304 62.5
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 9.4e-98 361.3 397 52.6
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 2.3e-91 340.1 387 49.6
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 7.2e-90 335.1 390 47.2
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 9.8e-87 324.7 380 47.1
vmacro21421 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 4.1e-85 319.3 274 60.2
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 1.2e-81 307.8 421 42.5
DCAR_020058 Daucus carota HOM05D005471 ORTHO05D006170 1.5e-79 300.8 236 61.9
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 1.3e-70 271.2 418 45.0
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 6.0e-68 262.3 432 43.5
AUR62037460 Chenopodium quinoa HOM05D005471 ORTHO05D006170 2.8e-65 253.4 256 52.0
Psat5g037200 Pisum sativum HOM05D005471 ORTHO05D006170 9.5e-58 228.4 155 69.7
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 9.9e-55 218.4 156 73.7
Gohir.D04G027975 Gossypium hirsutum HOM05D005471 ORTHO05D006170 9.9e-39 165.2 109 77.1
Gorai.012G030800 Gossypium raimondii HOM05D005471 ORTHO05D006170 2.9e-38 163.7 109 76.1
Gohir.D12G192766 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.9e-38 162.9 109 77.1
Gohir.A12G016250 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.5e-36 156.8 109 74.3
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 2.8e-33 147.1 117 69.2
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 4.0e-32 143.3 96 77.1
SHI08425 Sapria himalayana HOM05D005471 ORTHO05D006170 6.9e-32 142.5 127 53.5
Hund05280 Selenicereus undatus HOM05D005471 ORTHO05D006170 2.6e-31 140.6 99 67.7
Peaxi162Scf00448g00027 Petunia axillaris HOM05D005471 ORTHO05D006170 3.0e-27 127.1 123 54.5
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 6.7e-27 125.9 88 72.7
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 1.4e-21 108.2 79 64.6
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.9e-21 107.8 67 76.1
SEGI_08278 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 1.3e-17 95.1 94 51.1
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 1.8e-16 91.3 81 61.7
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 1.1e-13 82.0 55 65.5
Cre07.g320250 Chlamydomonas reinhardtii HOM05D005471 ORTHO05D006170 5.5e-13 79.7 336 25.9
Gohir.D11G128350 Gossypium hirsutum HOM05D005471 ORTHO05D006170 9.4e-13 79.0 50 72.0
CAN.G213.23 Capsicum annuum HOM05D005471 ORTHO05D006170 7.9e-12 75.9 71 49.3
Phvul.009G072333 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 1.3e-09 68.6 60 51.7


User provided reference genes

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