Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 6.7e-25 116.7 65 100.0
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 9.6e-24 112.8 65 93.8
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 2.8e-23 111.3 65 92.3
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 8.1e-23 109.8 65 90.8
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.4e-22 109.0 65 89.2
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.1e-22 107.8 65 87.7
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 5.3e-22 107.1 65 89.2
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 6.9e-22 106.7 63 92.1
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 9.0e-22 106.3 65 90.8
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 9.0e-22 106.3 65 90.8
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 9.0e-22 106.3 65 89.2
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 1.5e-21 105.5 65 86.2
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.4e-21 104.4 65 89.2
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 4.5e-21 104.0 65 87.7
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 5.8e-21 103.6 65 86.2
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 7.6e-21 103.2 65 86.2
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 1.0e-20 102.8 65 86.2
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.0e-20 102.8 66 87.9
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.3e-20 102.4 67 85.1
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.7e-20 102.1 66 89.4
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.2e-20 101.7 66 87.9
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 2.2e-20 101.7 65 84.6
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 3.8e-20 100.9 64 85.9
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 4.9e-20 100.5 66 86.4
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 6.5e-20 100.1 65 84.6
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 6.5e-20 100.1 66 84.8
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 6.5e-20 100.1 60 88.3
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 8.4e-20 99.8 63 84.1
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 1.1e-19 99.4 66 81.8
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 1.1e-19 99.4 66 87.9
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 1.4e-19 99.0 64 87.5
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.4e-19 99.0 66 84.8
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 1.9e-19 98.6 64 85.9
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.5e-19 98.2 67 83.6
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.5e-19 98.2 67 83.6
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 2.5e-19 98.2 65 83.1
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 3.2e-19 97.8 66 83.3
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 4.2e-19 97.4 67 82.1
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 4.2e-19 97.4 68 80.9
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 4.2e-19 97.4 67 82.1
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 7.1e-19 96.7 68 83.8
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 9.3e-19 96.3 64 84.4
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 9.3e-19 96.3 63 79.4
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 9.3e-19 96.3 67 80.6
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 1.2e-18 95.9 67 79.1
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.2e-18 95.9 68 80.9
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 1.6e-18 95.5 62 85.5
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 1.6e-18 95.5 60 86.7
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.6e-18 95.5 71 76.1
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.6e-18 95.5 71 76.1
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 1.6e-18 95.5 65 76.9
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 1.6e-18 95.5 65 78.5
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 1.6e-18 95.5 65 78.5
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.6e-18 95.5 65 78.5
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 2.7e-18 94.7 63 81.0
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 2.7e-18 94.7 64 82.8
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.0e-17 92.8 63 77.8
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 3.0e-17 91.3 64 79.7
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 3.0e-17 91.3 61 80.3
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 3.9e-17 90.9 60 81.7
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 3.9e-17 90.9 65 76.9
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 3.9e-17 90.9 65 76.9
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 3.9e-17 90.9 63 74.6
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 3.9e-17 90.9 67 79.1
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 1.1e-16 89.4 59 81.4
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 2.5e-16 88.2 66 75.8
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 5.7e-16 87.0 65 70.8
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 1.3e-15 85.9 61 78.7
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 1.3e-15 85.9 67 68.7
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 2.8e-15 84.7 66 71.2
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 2.8e-15 84.7 65 69.2
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 6.3e-15 83.6 70 71.4
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 4.1e-14 80.9 63 66.7
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 5.3e-14 80.5 63 66.7
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 5.3e-14 80.5 68 66.2
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 6.9e-14 80.1 66 66.7
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 6.9e-14 80.1 70 65.7
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 1.2e-13 79.3 59 74.6
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 1.5e-13 79.0 59 74.6
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 2.6e-13 78.2 67 68.7
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 3.4e-13 77.8 63 65.1
Aqoxy1G00264 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 5.9e-13 77.0 61 62.3
Aqoxy335s003 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 5.9e-13 77.0 61 62.3
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 5.9e-13 77.0 77 66.2
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 1.0e-12 76.3 58 74.1
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 2.2e-12 75.1 63 63.5
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 2.2e-12 75.1 63 63.5
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 2.2e-12 75.1 63 61.9
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 3.8e-12 74.3 55 76.4
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 5.0e-12 73.9 65 63.1
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 1.1e-11 72.8 64 64.1
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 1.1e-11 72.8 64 64.1
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.1e-11 72.8 52 76.9
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 1.4e-11 72.4 64 64.1
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 1.4e-11 72.4 64 64.1
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 1.4e-11 72.4 64 64.1
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 5.5e-11 70.5 62 67.7
Nitab4.5_0010145g0040 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.6e-10 68.9 44 86.4
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 4.6e-10 67.4 60 56.7
Lalb_Chr02g0144911 Lupinus albus HOM05D001568 ORTHO05D004404 1.3e-09 65.9 63 60.3
VMungo1215G2526 Vigna mungo HOM05D001946 ORTHO05D002111 1.3e-09 65.9 62 64.5
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 3.9e-09 64.3 60 56.7
EL10Ac9g22180 Beta vulgaris HOM05D001568 ORTHO05D004404 6.7e-09 63.5 76 55.3
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 8.7e-09 63.2 58 58.6
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 2.5e-08 61.6 60 55.0
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 2.5e-08 61.6 60 55.0
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 3.3e-08 61.2 59 54.2
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 3.3e-08 61.2 58 58.6
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.3e-08 60.8 58 53.4
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.3e-08 60.8 58 53.4
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 4.3e-08 60.8 58 55.2
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.3e-08 60.8 58 58.6
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 7.4e-08 60.1 52 59.6
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 7.4e-08 60.1 60 53.3
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 7.4e-08 60.1 58 55.2
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 7.4e-08 60.1 60 56.7
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 7.4e-08 60.1 60 56.7
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.3e-07 59.3 58 55.2
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 1.6e-07 58.9 62 53.2
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.6e-07 58.9 54 59.3
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 2.2e-07 58.5 61 54.1
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 2.2e-07 58.5 62 51.6
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 3.7e-07 57.8 61 57.4
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 6.3e-07 57.0 61 50.8
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 6.3e-07 57.0 58 51.7
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 6.3e-07 57.0 59 50.8
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 1.1e-06 56.2 61 50.8
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.1e-06 56.2 54 55.6
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 1.4e-06 55.8 54 51.9
AUR62030864 Chenopodium quinoa HOM05D001568 ORTHO05D004404 2.4e-06 55.1 74 48.6
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 2.4e-06 55.1 52 57.7
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 2.4e-06 55.1 60 51.7
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 3.1e-06 54.7 58 51.7
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 4.1e-06 54.3 57 49.1
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 4.1e-06 54.3 57 49.1
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 4.1e-06 54.3 57 49.1
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 5.3e-06 53.9 62 48.4
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 5.3e-06 53.9 63 47.6
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 6.9e-06 53.5 62 48.4
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 9.0e-06 53.1 57 52.6
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 9.0e-06 53.1 55 56.4


User provided reference genes

Program Settings