Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30640 Nelumbo nucifera HOM05D004346 ORTHO05D005153 8.6e-114 413.7 211 100.0
Nn5g29149 Nelumbo nucifera HOM05D004346 ORTHO05D005153 3.6e-64 248.8 206 67.5
Aqoxy6G01229 Aquilegia oxysepala HOM05D004346 ORTHO05D005153 2.6e-62 242.7 194 67.0
TAR068G0006 Trochodendron aralioides HOM05D004346 ORTHO05D005153 4.5e-62 241.9 196 66.3
QL02p010362 Quercus lobata HOM05D004346 ORTHO05D005153 7.6e-62 241.1 194 66.5
Cc10_g02310 Coffea canephora HOM05D004346 ORTHO05D005153 9.9e-62 240.7 194 66.0
Duzib116G0866 Durio zibethinus HOM05D004346 ORTHO05D005153 1.3e-61 240.4 172 69.8
TWI56G1281 Tripterygium wilfordii HOM05D004346 ORTHO05D005153 1.7e-61 240.0 194 66.5
COL.COLO4_26227 Corchorus olitorius HOM05D004346 ORTHO05D005153 2.2e-61 239.6 194 66.5
Duzib093G0381 Durio zibethinus HOM05D004346 ORTHO05D005153 4.9e-61 238.4 194 66.0
Manes.18G022200 Manihot esculenta HOM05D004346 ORTHO05D005153 6.4e-61 238.0 194 66.0
PSO541G5233 Papaver somniferum HOM05D004346 ORTHO05D005153 6.4e-61 238.0 194 66.0
PSO675G8115 Papaver somniferum HOM05D004346 ORTHO05D005153 6.4e-61 238.0 194 66.0
Sopen04g034450 Solanum pennellii HOM05D004346 ORTHO05D005153 6.4e-61 238.0 194 65.5
PGSC0003DMG400003704 Solanum tuberosum HOM05D004346 ORTHO05D005153 6.4e-61 238.0 194 65.5
CSS0003618 Camellia sinensis var. sinensis HOM05D004346 ORTHO05D005153 8.4e-61 237.7 194 64.9
Gohir.A05G189500 Gossypium hirsutum HOM05D004346 ORTHO05D005153 1.1e-60 237.3 172 69.2
Gohir.D05G192800 Gossypium hirsutum HOM05D004346 ORTHO05D005153 1.1e-60 237.3 172 69.2
Gorai.009G198000 Gossypium raimondii HOM05D004346 ORTHO05D005153 1.1e-60 237.3 172 69.2
Sabra02G0023800 Salix brachista HOM05D004346 ORTHO05D005153 1.1e-60 237.3 194 66.0
CiPaw.07G155800 Carya illinoinensis HOM05D004346 ORTHO05D005153 1.4e-60 236.9 194 64.9
ClCG05G018660 Citrullus lanatus HOM05D004346 ORTHO05D005153 1.4e-60 236.9 194 64.4
MELO3C003788.2 Cucumis melo HOM05D004346 ORTHO05D005153 1.4e-60 236.9 194 64.4
Thecc.08G035100 Theobroma cacao HOM05D004346 ORTHO05D005153 2.4e-60 236.1 194 65.5
CsaV3_3G045520 Cucumis sativus L. HOM05D004346 ORTHO05D005153 3.2e-60 235.7 194 63.9
Migut.N03118 Erythranthe guttata HOM05D004346 ORTHO05D005153 4.2e-60 235.3 194 65.5
Nn1g05970 Nelumbo nucifera HOM05D004346 ORTHO05D005153 4.2e-60 235.3 138 81.2
Actinidia22506 Actinidia chinensis HOM05D004346 ORTHO05D005153 5.4e-60 235.0 194 64.4
Dinv31796 Davidia involucrata HOM05D004346 ORTHO05D005153 5.4e-60 235.0 194 64.4
Oeu030608.1 Olea europaea HOM05D004346 ORTHO05D005153 5.4e-60 235.0 195 66.2
Potri.002G029900 Populus trichocarpa HOM05D004346 ORTHO05D005153 5.4e-60 235.0 194 65.5
SalBow8G0366 Salvia bowleyana HOM05D004346 ORTHO05D005153 5.4e-60 235.0 194 64.9
SalBow8G2486 Salvia bowleyana HOM05D004346 ORTHO05D005153 5.4e-60 235.0 194 64.9
ATR0680G160 Amborella trichopoda HOM05D004346 ORTHO05D005153 9.3e-60 234.2 197 64.0
Cpa.g.sc698.2 Carica papaya HOM05D004346 ORTHO05D005153 9.3e-60 234.2 197 66.0
Nitab4.5_0001861g0130 Nicotiana tabacum HOM05D004346 ORTHO05D005153 9.3e-60 234.2 142 78.2
CAN.G851.33 Capsicum annuum HOM05D004346 ORTHO05D005153 1.2e-59 233.8 142 77.5
Nitab4.5_0002156g0110 Nicotiana tabacum HOM05D004346 ORTHO05D005153 2.1e-59 233.0 142 77.5
Dinv39468 Davidia involucrata HOM05D004346 ORTHO05D005153 2.7e-59 232.6 194 63.9
Eucgr.F01853 Eucalyptus grandis HOM05D004346 ORTHO05D005153 2.7e-59 232.6 194 63.9
arahy.Tifrunner.gnm1.ann1.FS02K0 Arachis hypogaea HOM05D004346 ORTHO05D005153 3.5e-59 232.3 195 65.6
MBI01_g12679_MAGBIO Magnolia biondii HOM05D004346 ORTHO05D005153 3.5e-59 232.3 194 65.5
THA.LOC104813810 Tarenaya hassleriana HOM05D004346 ORTHO05D005153 6.0e-59 231.5 195 66.2
Aa31LG4G5700 Aethionema arabicum HOM05D004346 ORTHO05D005153 7.9e-59 231.1 195 65.6
CANSAT25G3810 Cannabis sativa HOM05D004346 ORTHO05D005153 7.9e-59 231.1 206 61.2
MD08G1023400 Malus domestica HOM05D004346 ORTHO05D005153 7.9e-59 231.1 172 66.9
Prupe.1G372600 Prunus persica HOM05D004346 ORTHO05D005153 7.9e-59 231.1 194 62.9
Cfa013888 Carpinus fangiana HOM05D004346 ORTHO05D005153 1.0e-58 230.7 183 65.6
Haze_22565 Corylus avellana HOM05D004346 ORTHO05D005153 1.0e-58 230.7 183 65.6
Lsat_1_v5_gn_5_25761 Lactuca sativa HOM05D004346 ORTHO05D005153 1.0e-58 230.7 194 62.4
Lj4C32T10 Lonicera japonica HOM05D004346 ORTHO05D005153 1.0e-58 230.7 194 63.9
Lj1g0013800 Lotus japonicus HOM05D004346 ORTHO05D005153 1.0e-58 230.7 194 64.9
TWI36G0841 Tripterygium wilfordii HOM05D004346 ORTHO05D005153 1.0e-58 230.7 194 63.9
DCAR_009955 Daucus carota HOM05D004346 ORTHO05D005153 1.3e-58 230.3 194 64.9
ECA232G0130 Erigeron canadensis HOM05D004346 ORTHO05D005153 1.3e-58 230.3 197 63.5
FvH4_2g39180 Fragaria vesca HOM05D004346 ORTHO05D005153 1.3e-58 230.3 194 63.4
RcHm_v2.0_Chr6g0301881 Rosa chinensis HOM05D004346 ORTHO05D005153 1.3e-58 230.3 194 63.4
Sed0026661 Sechium edule HOM05D004346 ORTHO05D009095 1.3e-58 230.3 194 62.9
FAN15G2637 Fragaria x ananassa HOM05D004346 ORTHO05D005153 1.8e-58 229.9 194 62.9
FAN27G0767 Fragaria x ananassa HOM05D004346 ORTHO05D005153 1.8e-58 229.9 194 62.9
Glyma.04G028400 Glycine max HOM05D004346 ORTHO05D005153 1.8e-58 229.9 194 64.4
Oeu030408.1 Olea europaea HOM05D004346 ORTHO05D005153 1.8e-58 229.9 143 78.3
TAR376G0822 Trochodendron aralioides HOM05D004346 ORTHO05D005153 1.8e-58 229.9 197 62.9
MSTRG.24272 Avicennia marina HOM05D004346 ORTHO05D005153 2.3e-58 229.6 194 64.4
Atru.chr13.385 Acer truncatum HOM05D004346 ORTHO05D005153 3.0e-58 229.2 194 63.9
CiPaw.08G061400 Carya illinoinensis HOM05D004346 ORTHO05D005153 3.0e-58 229.2 172 67.4
FAN20G0669 Fragaria x ananassa HOM05D004346 ORTHO05D005153 3.0e-58 229.2 194 62.4
CDE03G0026 Ceratophyllum demersum HOM05D004346 ORTHO05D005153 3.9e-58 228.8 141 75.9
Lalb_Chr23g0266421 Lupinus albus HOM05D004346 ORTHO05D005153 1.1e-57 227.3 194 63.4
Duzib041G0460 Durio zibethinus HOM05D004346 ORTHO05D005153 1.5e-57 226.9 194 62.9
Medtr3g112420 Medicago truncatula HOM05D004346 ORTHO05D005153 1.5e-57 226.9 194 62.9
CARHR068870 Cardamine hirsuta HOM05D004346 ORTHO05D005153 1.9e-57 226.5 195 64.6
Potri.005G232800 Populus trichocarpa HOM05D004346 ORTHO05D005153 2.5e-57 226.1 194 63.9
Eucgr.F01605 Eucalyptus grandis HOM05D004346 ORTHO05D005153 3.3e-57 225.7 194 62.4
Glyma.06G028500 Glycine max HOM05D004346 ORTHO05D005153 4.3e-57 225.3 197 63.5
MD15G1020800 Malus domestica HOM05D004346 ORTHO05D005153 4.3e-57 225.3 172 65.1
AT1G75460 Arabidopsis thaliana HOM05D004346 ORTHO05D005153 5.6e-57 224.9 195 63.6
Carub.0002s2234 Capsella rubella HOM05D004346 ORTHO05D005153 5.6e-57 224.9 195 64.1
Psat0s471g0440 Pisum sativum HOM05D004346 ORTHO05D005153 5.6e-57 224.9 194 63.4
VMungo1309G1438 Vigna mungo HOM05D004346 ORTHO05D005153 5.6e-57 224.9 194 63.4
A02p19950 Brassica napus HOM05D004346 ORTHO05D005153 7.4e-57 224.6 195 64.1
BolC2t09292H Brassica oleracea HOM05D004346 ORTHO05D005153 7.4e-57 224.6 195 64.1
BraA02t07032Z Brassica rapa HOM05D004346 ORTHO05D005153 7.4e-57 224.6 195 64.1
Ca_02070_v3 Cicer arietinum L. HOM05D004346 ORTHO05D005153 7.4e-57 224.6 194 62.9
Thhalv10019638m.g Eutrema salsugineum HOM05D004346 ORTHO05D005153 7.4e-57 224.6 195 64.6
THA.LOC104809066 Tarenaya hassleriana HOM05D004346 ORTHO05D005153 7.4e-57 224.6 173 67.6
AL2G35430 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 9.6e-57 224.2 195 64.1
BcaB05g24908 Brassica carinata HOM05D004346 ORTHO05D005153 9.6e-57 224.2 195 64.1
BcaC03g15576 Brassica carinata HOM05D004346 ORTHO05D005153 9.6e-57 224.2 195 64.1
C02p32610 Brassica napus HOM05D004346 ORTHO05D005153 9.6e-57 224.2 195 63.6
CARHR020270 Cardamine hirsuta HOM05D004346 ORTHO05D005153 9.6e-57 224.2 198 63.1
Ciclev10002101m.g Citrus clementina HOM05D004346 ORTHO05D005153 9.6e-57 224.2 194 62.4
Thhalv10008437m.g Eutrema salsugineum HOM05D004346 ORTHO05D005153 9.6e-57 224.2 198 62.6
TPR.G12390 Trifolium pratense HOM05D004346 ORTHO05D005153 1.3e-56 223.8 194 62.4
Phvul.009G012900 Phaseolus vulgaris HOM05D004346 ORTHO05D005153 1.6e-56 223.4 194 62.9
AL1G32470 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 2.1e-56 223.0 198 62.1
AT1G19740 Arabidopsis thaliana HOM05D004346 ORTHO05D005153 2.1e-56 223.0 198 62.1
A06p15850 Brassica napus HOM05D004346 ORTHO05D005153 2.1e-56 223.0 198 63.6
BraA06t24697Z Brassica rapa HOM05D004346 ORTHO05D005153 2.1e-56 223.0 198 63.6
Carub.0001s1929 Capsella rubella HOM05D004346 ORTHO05D005153 2.1e-56 223.0 198 62.1
Sp5g30610 Schrenkiella parvula HOM05D004346 ORTHO05D005153 2.1e-56 223.0 195 63.6
Sp1g17580 Schrenkiella parvula HOM05D004346 ORTHO05D005153 4.8e-56 221.9 198 61.6
Sed0026579 Sechium edule HOM05D004346 ORTHO05D005153 1.8e-55 219.9 183 61.7
Gohir.D01G101600 Gossypium hirsutum HOM05D004346 ORTHO05D005153 3.1e-55 219.2 141 74.5
Gorai.002G126100 Gossypium raimondii HOM05D004346 ORTHO05D005153 6.9e-55 218.0 206 59.2
unitig_21.g20157 Utricularia gibba HOM05D004346 ORTHO05D005153 9.0e-55 217.6 141 75.9
Pp3c2_28030 Physcomitrium patens HOM05D004346 ORTHO05D005153 2.0e-54 216.5 173 63.6
Gohir.A06G006700 Gossypium hirsutum HOM05D004346 ORTHO05D005153 2.6e-54 216.1 194 61.3
Gohir.D06G002460 Gossypium hirsutum HOM05D004346 ORTHO05D005153 2.6e-54 216.1 194 60.8
BolC5t30525H Brassica oleracea HOM05D004346 ORTHO05D005153 3.4e-54 215.7 199 62.3
C05p18170 Brassica napus HOM05D004346 ORTHO05D005153 4.5e-54 215.3 199 62.3
Gorai.010G007200 Gossypium raimondii HOM05D004346 ORTHO05D005153 4.5e-54 215.3 194 60.8
Mapoly0123s0028 Marchantia polymorpha HOM05D004346 ORTHO05D005153 5.8e-54 214.9 195 61.5
unitig_22.g6787 Utricularia gibba HOM05D004346 ORTHO05D005153 5.8e-54 214.9 200 61.5
Phvul.001G010700 Phaseolus vulgaris HOM05D004346 ORTHO05D005153 1.3e-53 213.8 195 60.5
VMungo0647G1706 Vigna mungo HOM05D004346 ORTHO05D005153 2.9e-53 212.6 195 60.0
AUR62034542 Chenopodium quinoa HOM05D004346 ORTHO05D005153 3.8e-53 212.2 175 61.7
Sc15g0007210 Simmondsia chinensis HOM05D004346 ORTHO05D005153 8.4e-53 211.1 173 62.4
Thhalv10027193m.g Eutrema salsugineum HOM05D004346 ORTHO05D005153 1.9e-52 209.9 139 71.2
Glyma.14G070400 Glycine max HOM05D004346 ORTHO05D005153 1.9e-52 209.9 202 60.4
Rhsim06G0027900 Rhododendron simsii HOM05D004346 ORTHO05D005153 7.1e-52 208.0 196 60.7
Thhalv10029286m.g Eutrema salsugineum HOM05D004346 ORTHO05D005153 9.3e-52 207.6 137 72.3
SGA_v2.0_scaffold326G48739 Striga asiatica HOM05D004346 ORTHO05D005153 2.7e-51 206.1 191 58.1
SEGI_19140 Sequoiadendron giganteum HOM05D004346 ORTHO05D005153 6.0e-51 204.9 195 58.5
AL7G10400 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 7.9e-51 204.5 186 60.2
HPP92_007934 Vanilla planifolia HOM05D004346 ORTHO05D005153 7.9e-51 204.5 202 57.9
SMO340G0026 Selaginella moellendorffii HOM05D004346 ORTHO05D005153 1.8e-50 203.4 202 57.4
SEGI_26379 Sequoiadendron giganteum HOM05D004346 ORTHO05D005153 3.0e-50 202.6 197 57.9
Ah.10g035530 Amaranthus hybridus HOM05D004346 ORTHO05D005153 5.1e-50 201.8 192 57.3
AL8G23230 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 1.1e-49 200.7 126 73.8
AL5G17660 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 3.3e-49 199.1 126 73.8
Os07g0509700 Oryza sativa ssp. japonica HOM05D004346 ORTHO05D005153 4.3e-49 198.7 201 54.2
AL3G42160 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 5.7e-49 198.4 138 68.8
AL2G41610 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 7.4e-49 198.0 127 74.0
Zm00001eb322430 Zea mays HOM05D004346 ORTHO05D005153 2.8e-48 196.1 200 54.0
Zm00001eb105790 Zea mays HOM05D004346 ORTHO05D005153 6.2e-48 194.9 200 54.0
Zm00001eb380450 Zea mays HOM05D004346 ORTHO05D005153 6.2e-48 194.9 142 64.8
CBR_g8224 Chara braunii HOM05D004346 ORTHO05D005153 2.6e-46 189.5 199 53.8
Peaxi162Scf00189g00121 Petunia axillaris HOM05D004346 ORTHO05D005153 1.1e-44 184.1 114 78.1
BcaB07g31988 Brassica carinata HOM05D004346 ORTHO05D005153 4.2e-44 182.2 123 71.5
CBR_g51048 Chara braunii HOM05D004346 ORTHO05D005153 1.1e-41 174.1 143 60.1
Actinidia15370 Actinidia chinensis HOM05D004346 ORTHO05D005153 1.9e-41 173.3 156 59.6
Lj3g0013855 Lotus japonicus HOM05D004346 ORTHO05D005153 3.4e-38 162.5 100 76.0
LjContig00412g0021689 Lotus japonicus HOM05D004346 ORTHO05D005153 3.4e-38 162.5 100 76.0
AL7G11380 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 8.5e-37 157.9 126 62.7
FAN17G2329 Fragaria x ananassa HOM05D004346 ORTHO05D005153 2.7e-35 152.9 104 69.2
FAN03G3294 Fragaria x ananassa HOM05D004346 ORTHO05D005153 1.0e-34 151.0 125 60.0
FAN09G3639 Fragaria x ananassa HOM05D004346 ORTHO05D005153 1.0e-34 151.0 125 58.4
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 3.0e-34 149.4 146 54.8
FAN21G1121 Fragaria x ananassa HOM05D004346 ORTHO05D005153 2.2e-29 133.3 138 52.9
AagrBONN_evm.TU.Sc2ySwM_117.454 Anthoceros agrestis HOM05D004346 ORTHO05D005153 8.8e-26 121.3 134 50.7
Solyc04g080870.1 Solanum lycopersicum HOM05D004346 ORTHO05D005153 8.2e-24 114.8 68 83.8
FAN07G0972 Fragaria x ananassa HOM05D002863 ORTHO05D005691 3.1e-23 112.8 75 68.0
Os03g0409100 Oryza sativa ssp. japonica HOM05D004346 ORTHO05D005153 2.7e-19 99.8 146 40.4
VMungo1383G2745 Vigna mungo HOM05D003359 ORTHO05D005153 2.7e-19 99.8 70 67.1
Zm00001eb019650 Zea mays HOM05D004346 ORTHO05D005153 4.0e-18 95.9 147 38.1
Cre02.g141550 Chlamydomonas reinhardtii HOM05D004346 ORTHO05D005153 2.5e-12 76.6 141 34.8
PRCOL_00005671 Prasinoderma coloniale HOM05D004346 ORTHO05D005153 2.1e-11 73.6 145 29.7
RcHm_v2.0_Chr5g0055761 Rosa chinensis HOM05D004346 ORTHO05D005153 4.4e-09 65.9 44 70.5
FAN13G0889 Fragaria x ananassa HOM05D004346 ORTHO05D005153 5.4e-07 58.9 59 50.8


User provided reference genes

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