Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30609 Nelumbo nucifera HOM05D006323 ORTHO05D007827 2.2e-282 974.9 474 100.0
TAR381G0342 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.3e-202 709.9 474 74.5
TAR381G1608 Trochodendron aralioides HOM05D006323 ORTHO05D007827 2.2e-202 709.1 474 74.3
Dinv44950 Davidia involucrata HOM05D006323 ORTHO05D007827 4.6e-192 674.9 459 71.5
Hma1.2p1_0819F.1_g223630 Hydrangea macrophylla HOM05D006323 ORTHO05D007827 2.1e-184 649.4 454 69.6
CSS0045238 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 1.6e-181 639.8 459 68.6
CSS0024022 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 2.4e-180 636.0 459 68.2
PSO675G0675 Papaver somniferum HOM05D006323 ORTHO05D007827 5.9e-179 631.3 472 67.6
Aqoxy6G02596 Aquilegia oxysepala HOM05D006323 ORTHO05D007827 1.3e-178 630.2 470 67.7
PSO541G5960 Papaver somniferum HOM05D006323 ORTHO05D007827 1.7e-178 629.8 466 68.2
CiPaw.07G174200 Carya illinoinensis HOM05D006323 ORTHO05D007827 6.5e-178 627.9 465 67.1
ClCG08G016540 Citrullus lanatus HOM05D006323 ORTHO05D007827 1.1e-177 627.1 454 65.9
Haze_22429 Corylus avellana HOM05D006323 ORTHO05D007827 7.2e-177 624.4 462 68.2
Actinidia38108 Actinidia chinensis HOM05D006323 ORTHO05D007827 2.1e-176 622.9 466 66.5
MELO3C010800.2 Cucumis melo HOM05D006323 ORTHO05D007827 1.1e-174 617.1 454 65.0
CsaV3_2G026070 Cucumis sativus L. HOM05D006323 ORTHO05D007827 7.4e-174 614.4 454 64.5
QL12p038177 Quercus lobata HOM05D006323 ORTHO05D007827 1.4e-169 600.1 458 64.8
CSS0010458 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 1.9e-169 599.7 469 64.6
CSS0050369 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 4.2e-169 598.6 467 65.1
Sed0007452 Sechium edule HOM05D006323 ORTHO05D007827 7.2e-169 597.8 456 63.4
Cfa013771 Carpinus fangiana HOM05D006323 ORTHO05D007827 2.3e-167 592.8 461 64.9
vmacro22049 Vaccinium macrocarpon HOM05D006323 ORTHO05D007827 8.0e-160 567.8 469 62.0
arahy.Tifrunner.gnm1.ann1.JK4I75 Arachis hypogaea HOM05D006323 ORTHO05D007827 9.7e-158 560.8 473 59.2
Prupe.1G422100 Prunus persica HOM05D006323 ORTHO05D007827 2.8e-157 559.3 462 60.6
Cpa.g.sc142.34 Carica papaya HOM05D006323 ORTHO05D007827 8.2e-157 557.8 452 61.3
Cpa.g.sc142.31 Carica papaya HOM05D006323 ORTHO05D007827 1.1e-156 557.4 452 61.3
Nitab4.5_0000497g0170 Nicotiana tabacum HOM05D006323 ORTHO05D007827 1.7e-154 550.1 456 58.8
Nitab4.5_0003725g0070 Nicotiana tabacum HOM05D006323 ORTHO05D007827 5.0e-154 548.5 457 59.1
Eucgr.F00088 Eucalyptus grandis HOM05D006323 ORTHO05D007827 1.0e-151 540.8 466 59.2
Rhsim07G0219300 Rhododendron simsii HOM05D006323 ORTHO05D007827 1.8e-151 540.0 460 61.7
CANSAT25G0442 Cannabis sativa HOM05D006323 ORTHO05D007827 1.2e-150 537.3 474 58.2
TWI56G0563 Tripterygium wilfordii HOM05D006323 ORTHO05D007827 1.2e-150 537.3 459 58.4
Lalb_Chr14g0368151 Lupinus albus HOM05D006323 ORTHO05D007827 9.8e-150 534.3 468 57.7
Duzib093G0619 Durio zibethinus HOM05D006323 ORTHO05D007827 1.7e-149 533.5 448 58.9
Thecc.08G088000 Theobroma cacao HOM05D006323 ORTHO05D007827 3.7e-149 532.3 469 56.9
Ca_13213_v3 Cicer arietinum L. HOM05D006323 ORTHO05D007827 1.1e-148 530.8 472 56.1
Sopen04g031380 Solanum pennellii HOM05D006323 ORTHO05D007827 1.1e-148 530.8 459 56.9
PGSC0003DMG400010620 Solanum tuberosum HOM05D006323 ORTHO05D007827 1.8e-148 530.0 462 56.5
Lj5g0017088 Lotus japonicus HOM05D006323 ORTHO05D007827 1.2e-147 527.3 473 57.7
Manes.18G047100 Manihot esculenta HOM05D006323 ORTHO05D007827 1.6e-147 526.9 459 56.4
HanXRQChr10g0298611 Helianthus annuus HOM05D006323 ORTHO05D007827 2.7e-147 526.2 477 58.1
GSVIVG01009337001 Vitis vinifera HOM05D006323 ORTHO05D007827 1.0e-146 524.2 459 59.0
TAR625G0711 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.9e-145 520.0 452 59.3
Gorai.009G220400 Gossypium raimondii HOM05D006323 ORTHO05D007827 9.5e-145 517.7 470 57.7
Gohir.D05G213700 Gossypium hirsutum HOM05D006323 ORTHO05D007827 2.1e-144 516.5 470 57.9
Potri.002G117900 Populus trichocarpa HOM05D006323 ORTHO05D007827 3.6e-144 515.8 456 58.1
Oeu016579.1 Olea europaea HOM05D006323 ORTHO05D007827 1.0e-143 514.2 457 56.7
Gohir.A05G210400 Gossypium hirsutum HOM05D006323 ORTHO05D007827 2.3e-143 513.1 470 57.9
FAN20G1244 Fragaria x ananassa HOM05D006323 ORTHO05D007827 5.2e-143 511.9 457 58.6
FvH4_2g32960 Fragaria vesca HOM05D006323 ORTHO05D007827 8.8e-143 511.1 457 58.0
RcHm_v2.0_Chr6g0309741 Rosa chinensis HOM05D006323 ORTHO05D007827 2.6e-142 509.6 463 58.3
FAN24G0652 Fragaria x ananassa HOM05D006323 ORTHO05D007827 7.5e-142 508.1 457 57.8
PGR083G0013 Punica granatum HOM05D006323 ORTHO05D007827 1.3e-141 507.3 463 57.2
CAN.G724.32 Capsicum annuum HOM05D006323 ORTHO05D007827 4.9e-141 505.4 454 55.5
Medtr1g017940 Medicago truncatula HOM05D006323 ORTHO05D007827 4.9e-141 505.4 480 56.0
Psat6g018000 Pisum sativum HOM05D006323 ORTHO05D007827 3.1e-140 502.7 476 54.6
Hund05295 Selenicereus undatus HOM05D006323 ORTHO05D007827 4.1e-140 502.3 456 55.0
FAN27G3326 Fragaria x ananassa HOM05D006323 ORTHO05D007827 5.4e-140 501.9 457 57.5
TPR.G13155 Trifolium pratense HOM05D006323 ORTHO05D007827 1.6e-139 500.4 478 54.0
Atru.chr13.839 Acer truncatum HOM05D006323 ORTHO05D007827 2.0e-139 500.0 460 56.5
FAN15G2783 Fragaria x ananassa HOM05D006323 ORTHO05D007827 2.0e-139 500.0 457 57.1
Migut.N02786 Erythranthe guttata HOM05D006323 ORTHO05D007827 5.9e-139 498.4 462 53.9
Sabra02G0092600 Salix brachista HOM05D006323 ORTHO05D007827 7.8e-139 498.0 456 56.4
CDE04G3275 Ceratophyllum demersum HOM05D006323 ORTHO05D007827 1.0e-138 497.7 453 57.0
Ciclev10001174m.g Citrus clementina HOM05D006323 ORTHO05D007827 1.0e-138 497.7 456 56.8
EL10Ac1g02373 Beta vulgaris HOM05D006323 ORTHO05D007827 6.6e-138 495.0 468 54.7
Glyma.17G234600 Glycine max HOM05D006323 ORTHO05D007827 3.3e-137 492.7 470 54.0
Phvul.001G028300 Phaseolus vulgaris HOM05D006323 ORTHO05D007827 4.3e-137 492.3 468 53.4
Glyma.14G089027 Glycine max HOM05D006323 ORTHO05D007827 2.2e-133 479.9 466 53.6
SalBow2G0555 Salvia bowleyana HOM05D006323 ORTHO05D007827 3.7e-133 479.2 466 53.2
Lsat_1_v5_gn_1_1301 Lactuca sativa HOM05D006323 ORTHO05D007827 2.4e-132 476.5 461 55.3
arahy.Tifrunner.gnm1.ann1.694GR7 Arachis hypogaea HOM05D006323 ORTHO05D007827 1.3e-130 470.7 424 56.1
SGA_v2.0_scaffold28G11834 Striga asiatica HOM05D006323 ORTHO05D007827 2.8e-128 463.0 460 54.3
THA.LOC104825780 Tarenaya hassleriana HOM05D006323 ORTHO05D007827 3.1e-127 459.5 449 52.3
HPP92_013407 Vanilla planifolia HOM05D006323 ORTHO05D007827 9.2e-124 448.0 461 51.4
VMungo0647G1220 Vigna mungo HOM05D006323 ORTHO05D007827 6.6e-122 441.8 469 50.5
Sp6g10510 Schrenkiella parvula HOM05D006323 ORTHO05D007827 1.1e-121 441.0 450 53.3
Carub.0003s1171 Capsella rubella HOM05D006323 ORTHO05D007827 5.6e-121 438.7 457 52.5
AUR62022472 Chenopodium quinoa HOM05D006323 ORTHO05D007827 6.2e-120 435.3 483 50.3
ATR0739G201 Amborella trichopoda HOM05D006323 ORTHO05D007827 8.1e-120 434.9 510 49.2
Thhalv10028685m.g Eutrema salsugineum HOM05D006323 ORTHO05D007827 8.9e-119 431.4 450 50.9
AL3G24000 Arabidopsis lyrata HOM05D006323 ORTHO05D007827 4.9e-117 425.6 458 50.0
Ah.05g167080 Amaranthus hybridus HOM05D006323 ORTHO05D007827 5.1e-114 415.6 462 49.4
C03p33680 Brassica napus HOM05D006323 ORTHO05D007827 2.5e-113 413.3 452 50.9
BolC3t15688H Brassica oleracea HOM05D006323 ORTHO05D007827 2.5e-113 413.3 452 50.9
AT3G12350 Arabidopsis thaliana HOM05D006323 ORTHO05D007827 3.6e-112 409.5 458 50.2
CARHR287100 Cardamine hirsuta HOM05D006323 ORTHO05D007827 4.7e-112 409.1 449 49.9
Lj4A71T64 Lonicera japonica HOM05D006323 ORTHO05D007827 6.2e-112 408.7 321 63.6
BcaC01g04786 Brassica carinata HOM05D006323 ORTHO05D007827 3.8e-109 399.4 446 50.2
Sc26g0004210 Simmondsia chinensis HOM05D006323 ORTHO05D007827 4.9e-109 399.1 411 49.4
Aa31LG5G21510 Aethionema arabicum HOM05D006323 ORTHO05D007827 9.2e-108 394.8 454 47.4
A03p27900 Brassica napus HOM05D006323 ORTHO05D007827 1.2e-107 394.4 450 48.9
BcaB01g02882 Brassica carinata HOM05D006323 ORTHO05D007827 7.8e-107 391.7 448 47.8
QL05p065459 Quercus lobata HOM05D006323 ORTHO05D007827 1.0e-106 391.3 305 63.6
BraA03t12002Z Brassica rapa HOM05D006323 ORTHO05D007827 3.3e-105 386.3 450 47.8
CAN.G724.31 Capsicum annuum HOM05D006323 ORTHO05D007827 5.8e-102 375.6 451 44.6
AUR62037416 Chenopodium quinoa HOM05D006323 ORTHO05D007827 1.6e-99 367.5 459 45.1
BcaC01g04794 Brassica carinata HOM05D006323 ORTHO05D007827 5.6e-97 359.0 446 47.5
HPP92_013383 Vanilla planifolia HOM05D006323 ORTHO05D007827 6.4e-93 345.5 364 49.5
TAR628G0857 Trochodendron aralioides HOM05D006323 ORTHO05D007827 7.1e-92 342.0 304 59.2
Cc10_g05020 Coffea canephora HOM05D006323 ORTHO05D007827 7.1e-84 315.5 279 59.9
ECA247G3150 Erigeron canadensis HOM05D006323 ORTHO05D007827 1.6e-83 314.3 326 54.0
Mapoly0007s0129 Marchantia polymorpha HOM05D006323 ORTHO05D007827 3.0e-74 283.5 486 35.4
COL.COLO4_28496 Corchorus olitorius HOM05D006323 ORTHO05D007827 3.3e-73 280.0 245 58.0
SEGI_30290 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 7.4e-65 252.3 343 42.6
Os12g0511000 Oryza sativa ssp. japonica HOM05D006323 ORTHO05D007827 6.3e-56 222.6 464 33.0
Pp3c15_12240 Physcomitrium patens HOM05D006323 ORTHO05D007827 5.0e-53 213.0 522 31.4
unitig_8.g4874 Utricularia gibba HOM05D006323 ORTHO05D007827 8.8e-50 202.2 238 51.3
AagrBONN_evm.TU.Sc2ySwM_362.2944 Anthoceros agrestis HOM05D006323 ORTHO05D007827 2.5e-44 184.1 357 34.5
Eucgr.L02719 Eucalyptus grandis HOM05D006323 ORTHO05D007827 9.4e-44 182.2 150 60.7
TAR623G1714 Trochodendron aralioides HOM05D006323 ORTHO05D007827 7.2e-36 156.0 99 70.7
HPP92_013381 Vanilla planifolia HOM05D006323 ORTHO05D007827 5.2e-34 149.8 196 44.9
CBR_g25752 Chara braunii HOM05D006323 ORTHO05D007827 3.7e-32 143.7 554 25.1
MD08G1081200 Malus domestica HOM05D006323 ORTHO05D007827 2.4e-31 141.0 122 59.0
FvH4_3g44630 Fragaria vesca HOM05D006323 ORTHO05D007827 5.4e-31 139.8 126 57.9
COL.COLO4_28497 Corchorus olitorius HOM05D006323 ORTHO05D007827 7.0e-31 139.4 136 50.0
Lj5P501T7 Lonicera japonica HOM05D006323 ORTHO05D007827 3.4e-25 120.6 89 67.4
Eucgr.C01112 Eucalyptus grandis HOM05D006323 ORTHO05D007827 2.4e-23 114.4 91 63.7
Lj1P1160T24 Lonicera japonica HOM05D006323 ORTHO05D007827 3.1e-23 114.0 84 66.7
TAR623G1335 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.5e-20 105.1 64 73.4
SEGI_04434 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 1.9e-20 104.8 165 37.0
unitig_8.g4875 Utricularia gibba HOM05D006323 ORTHO05D007827 7.3e-20 102.8 106 48.1
Zm00001eb264620 Zea mays HOM05D006323 ORTHO05D007827 9.8e-17 92.4 244 29.5
QL04p027551 Quercus lobata HOM05D006323 ORTHO05D007827 1.4e-15 88.6 92 48.9
Oeu037483.1 Olea europaea HOM05D006323 ORTHO05D007827 6.4e-08 63.2 214 34.1


User provided reference genes

Program Settings