Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30604 Nelumbo nucifera HOM05D006958 ORTHO05D008814 2.2e-51 205.3 100 100.0
TAR376G0445 Trochodendron aralioides HOM05D006958 ORTHO05D008814 9.3e-18 93.6 74 62.2
Dinv39219 Davidia involucrata HOM05D006958 ORTHO05D008814 1.1e-15 86.7 74 59.5
CSS0020437 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 1.2e-12 76.6 74 52.7
Gohir.D05G213600 Gossypium hirsutum HOM05D006958 ORTHO05D008814 1.2e-12 76.6 74 52.7
CSS0026693 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 2.6e-12 75.5 79 50.6
Eucgr.F02250 Eucalyptus grandis HOM05D006958 ORTHO05D008814 3.4e-12 75.1 75 52.0
Glyma.14G089018 Glycine max HOM05D006958 ORTHO05D008814 4.5e-12 74.7 74 52.7
Potri.002G118300 Populus trichocarpa HOM05D006958 ORTHO05D008814 5.8e-12 74.3 75 53.3
Thecc.08G088500 Theobroma cacao HOM05D006958 ORTHO05D008814 5.8e-12 74.3 74 51.4
Gorai.009G220300 Gossypium raimondii HOM05D006958 ORTHO05D008814 7.6e-12 73.9 72 51.4
Duzib093G1923 Durio zibethinus HOM05D006958 ORTHO05D008814 1.0e-11 73.6 74 54.1
Actinidia10201 Actinidia chinensis HOM05D006958 ORTHO05D008814 1.3e-11 73.2 74 54.1
Cfa013775 Carpinus fangiana HOM05D006958 ORTHO05D008814 2.9e-11 72.0 74 50.0
Ca_13215_v3 Cicer arietinum L. HOM05D006958 ORTHO05D008814 2.9e-11 72.0 72 52.8
MBI16_g23890_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D008814 2.9e-11 72.0 74 47.3
Lj4A758G77 Lonicera japonica HOM05D006958 ORTHO05D008814 4.9e-11 71.2 73 53.4
Manes.18G046700 Manihot esculenta HOM05D006958 ORTHO05D008814 4.9e-11 71.2 74 47.3
Rhsim06G0062400 Rhododendron simsii HOM05D006958 ORTHO05D008814 4.9e-11 71.2 74 50.0
GSVIVG01009341001 Vitis vinifera HOM05D006958 ORTHO05D008814 4.9e-11 71.2 74 51.4
Actinidia22696 Actinidia chinensis HOM05D006958 ORTHO05D008814 6.5e-11 70.9 72 52.8
QL12p038133 Quercus lobata HOM05D006958 ORTHO05D008814 6.5e-11 70.9 73 50.7
arahy.Tifrunner.gnm1.ann1.8TQ0W2 Arachis hypogaea HOM05D006958 ORTHO05D008814 8.4e-11 70.5 72 50.0
MBI15_g25904_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D017181 1.1e-10 70.1 72 47.2
Medtr1g018000 Medicago truncatula HOM05D006958 ORTHO05D008814 1.1e-10 70.1 74 55.4
CANSAT25G3409 Cannabis sativa HOM05D006958 ORTHO05D008814 1.4e-10 69.7 80 47.5
COL.COLO4_28503 Corchorus olitorius HOM05D006958 ORTHO05D008814 1.4e-10 69.7 72 50.0
TWI12G1073 Tripterygium wilfordii HOM05D006958 ORTHO05D008814 1.4e-10 69.7 92 44.6
arahy.Tifrunner.gnm1.ann1.JFD9T8 Arachis hypogaea HOM05D006958 ORTHO05D008814 1.9e-10 69.3 72 48.6
CDE04G0359 Ceratophyllum demersum HOM05D006958 ORTHO05D008814 2.5e-10 68.9 77 45.5
CiPaw.07G174600 Carya illinoinensis HOM05D006958 ORTHO05D008814 3.2e-10 68.6 74 48.6
Haze_22433 Corylus avellana HOM05D006958 ORTHO05D008814 3.2e-10 68.6 73 47.9
Psat6g018160 Pisum sativum HOM05D006958 ORTHO05D008814 5.5e-10 67.8 74 48.6
arahy.Tifrunner.gnm1.ann1.D1UQZZ Arachis hypogaea HOM05D006958 ORTHO05D008814 3.5e-09 65.1 63 52.4
MD15G1069100 Malus domestica HOM05D006958 ORTHO05D008814 3.5e-09 65.1 74 44.6
TPR.G37796 Trifolium pratense HOM05D006958 ORTHO05D008814 4.6e-09 64.7 74 51.4
Aqoxy6G02602 Aquilegia oxysepala HOM05D006958 ORTHO05D008814 1.0e-08 63.5 74 48.6
Sc02g0007890 Simmondsia chinensis HOM05D006958 ORTHO05D008814 1.0e-08 63.5 74 44.6
Atru.chr13.835 Acer truncatum HOM05D006958 ORTHO05D008814 2.3e-08 62.4 74 43.2
Prupe.1G422600 Prunus persica HOM05D006958 ORTHO05D008814 2.3e-08 62.4 93 43.0
Peaxi162Scf00081g02114 Petunia axillaris HOM05D006958 ORTHO05D008814 3.0e-08 62.0 74 47.3
Cc10_g05800 Coffea canephora HOM05D006958 ORTHO05D008814 6.7e-08 60.8 94 43.6
Migut.N02783 Erythranthe guttata HOM05D006958 ORTHO05D008814 1.1e-07 60.1 75 41.3
Lsat_1_v5_gn_6_110920 Lactuca sativa HOM05D006958 ORTHO05D008814 1.1e-07 60.1 73 47.9
Lalb_Chr14g0368181 Lupinus albus HOM05D006958 ORTHO05D008814 1.5e-07 59.7 74 47.3
RcHm_v2.0_Chr6g0309651 Rosa chinensis HOM05D006958 ORTHO05D008814 1.9e-07 59.3 74 45.9
SGA_v2.0_scaffold28G11833 Striga asiatica HOM05D006958 ORTHO05D008814 2.5e-07 58.9 74 41.9
Aa31LG2G10550 Aethionema arabicum HOM05D006958 ORTHO05D008814 7.4e-07 57.4 85 43.5
Lj5g0000926 Lotus japonicus HOM05D006958 ORTHO05D008814 7.4e-07 57.4 72 44.4
Hund05299 Selenicereus undatus HOM05D006958 ORTHO05D008814 7.4e-07 57.4 75 42.7
ATR0739G011 Amborella trichopoda HOM05D006958 ORTHO05D008814 9.6e-07 57.0 78 42.3
HanXRQChr08g0229631 Helianthus annuus HOM05D006958 ORTHO05D008814 1.6e-06 56.2 75 45.3
Phvul.001G028000 Phaseolus vulgaris HOM05D006958 ORTHO05D008814 1.6e-06 56.2 74 44.6
Ciclev10001733m.g Citrus clementina HOM05D006958 ORTHO05D008814 2.8e-06 55.5 72 40.3
CAN.G724.27 Capsicum annuum HOM05D006958 ORTHO05D008814 3.7e-06 55.1 76 42.1
FvH4_2g33060 Fragaria vesca HOM05D006958 ORTHO05D008814 3.7e-06 55.1 74 41.9
FAN27G0228 Fragaria x ananassa HOM05D006958 ORTHO05D008814 3.7e-06 55.1 74 41.9
FAN24G2490 Fragaria x ananassa HOM05D006958 ORTHO05D008814 4.8e-06 54.7 74 41.9


User provided reference genes

Program Settings