Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30598 Nelumbo nucifera HOM05D005585 ORTHO05D006905 5.7e-200 700.7 345 100.0
TAR628G0421 Trochodendron aralioides HOM05D005585 ORTHO05D006905 1.4e-142 510.0 345 74.5
Dinv20235 Davidia involucrata HOM05D005585 ORTHO05D006905 2.9e-127 459.1 346 68.5
Prupe.5G234900 Prunus persica HOM05D005585 ORTHO05D006905 6.5e-127 458.0 324 70.4
PSO170G1171 Papaver somniferum HOM05D005585 ORTHO05D006905 1.9e-123 446.4 319 70.2
PSO017G0826 Papaver somniferum HOM05D005585 ORTHO05D006905 2.5e-123 446.0 319 71.2
Manes.06G004600 Manihot esculenta HOM05D005585 ORTHO05D006905 9.7e-123 444.1 326 68.4
RcHm_v2.0_Chr7g0178161 Rosa chinensis HOM05D005585 ORTHO05D006905 1.8e-121 439.9 317 69.7
Thecc.03G059000 Theobroma cacao HOM05D005585 ORTHO05D006905 2.4e-121 439.5 354 64.7
CANSAT80G2587 Cannabis sativa HOM05D005585 ORTHO05D006905 1.2e-120 437.2 315 67.6
GSVIVG01008457001 Vitis vinifera HOM05D005585 ORTHO05D006905 2.0e-120 436.4 294 71.4
Aqoxy5G00867 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 2.6e-120 436.0 321 69.2
CANSAT80G1087 Cannabis sativa HOM05D005585 ORTHO05D006905 3.4e-120 435.6 292 70.9
CSS0043300 Camellia sinensis var. sinensis HOM05D005585 ORTHO05D006905 1.0e-119 434.1 290 71.7
FvH4_5g17500 Fragaria vesca HOM05D005585 ORTHO05D006905 6.5e-119 431.4 347 63.7
MD06G1228400 Malus domestica HOM05D005585 ORTHO05D006905 1.1e-118 430.6 322 67.7
Potri.012G045200 Populus trichocarpa HOM05D005585 ORTHO05D006905 1.1e-118 430.6 346 63.3
FAN08G0665 Fragaria x ananassa HOM05D005585 ORTHO05D006905 2.5e-118 429.5 335 65.1
Hma1.2p1_0163F.1_g072970 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 3.6e-117 425.6 344 65.1
QL10p030702 Quercus lobata HOM05D005585 ORTHO05D006905 4.6e-117 425.2 332 64.2
Gohir.A09G175000 Gossypium hirsutum HOM05D005585 ORTHO05D006905 7.9e-117 424.5 346 64.2
COL.COLO4_28892 Corchorus olitorius HOM05D005585 ORTHO05D006905 2.3e-116 422.9 333 64.9
Duzib068G1453 Durio zibethinus HOM05D005585 ORTHO05D006905 6.7e-116 421.4 328 65.5
Phvul.004G149700 Phaseolus vulgaris HOM05D005585 ORTHO05D006905 6.7e-116 421.4 324 66.0
Hund22311 Selenicereus undatus HOM05D005585 ORTHO05D006905 1.5e-115 420.2 347 62.0
Cc04_g06090 Coffea canephora HOM05D005585 ORTHO05D006905 5.7e-115 418.3 331 64.0
MD14G1237600 Malus domestica HOM05D005585 ORTHO05D006905 7.4e-115 417.9 299 68.6
Glyma.07G103200 Glycine max HOM05D005585 ORTHO05D006905 1.7e-114 416.8 311 66.2
PGR044G1909 Punica granatum HOM05D005585 ORTHO05D006905 1.7e-114 416.8 347 63.4
Medtr6g069850 Medicago truncatula HOM05D005585 ORTHO05D006905 2.2e-114 416.4 317 65.0
CsaV3_1G007220 Cucumis sativus L. HOM05D005585 ORTHO05D006905 2.8e-114 416.0 318 66.7
MELO3C002139.2 Cucumis melo HOM05D005585 ORTHO05D006905 3.7e-114 415.6 318 66.0
Gorai.006G191400 Gossypium raimondii HOM05D005585 ORTHO05D006905 3.7e-114 415.6 345 62.6
CiPaw.15G144600 Carya illinoinensis HOM05D005585 ORTHO05D006905 1.1e-113 414.1 327 64.2
Lj2g0015776 Lotus japonicus HOM05D005585 ORTHO05D006905 1.1e-113 414.1 312 64.7
TPR.G8624 Trifolium pratense HOM05D005585 ORTHO05D006905 1.1e-113 414.1 311 66.2
ATR1153G069 Amborella trichopoda HOM05D005585 ORTHO05D006905 1.4e-113 413.7 331 63.1
TWI60G0738 Tripterygium wilfordii HOM05D005585 ORTHO05D006905 3.1e-113 412.5 319 63.9
Lalb_Chr22g0353511 Lupinus albus HOM05D005585 ORTHO05D006905 5.3e-113 411.8 311 65.9
Ciclev10015784m.g Citrus clementina HOM05D005585 ORTHO05D006905 6.9e-113 411.4 302 67.9
AUR62001019 Chenopodium quinoa HOM05D005585 ORTHO05D006905 4.5e-112 408.7 280 70.0
Lalb_Chr14g0370621 Lupinus albus HOM05D005585 ORTHO05D006905 5.9e-112 408.3 311 64.6
Sed0009200 Sechium edule HOM05D005585 ORTHO05D006905 7.7e-112 407.9 292 66.8
Ca_25346_v3 Cicer arietinum L. HOM05D005585 ORTHO05D006905 1.0e-111 407.5 324 63.9
Psat1g030240 Pisum sativum HOM05D005585 ORTHO05D006905 1.0e-111 407.5 310 64.8
PGSC0003DMG400005757 Solanum tuberosum HOM05D005585 ORTHO05D006905 1.3e-111 407.1 309 66.7
Eucgr.B00886 Eucalyptus grandis HOM05D005585 ORTHO05D006905 3.8e-111 405.6 327 62.7
arahy.Tifrunner.gnm1.ann1.8TLB5V Arachis hypogaea HOM05D005585 ORTHO05D006905 6.5e-111 404.8 287 69.3
MSTRG.6190 Avicennia marina HOM05D005585 ORTHO05D006905 2.5e-110 402.9 338 63.3
Rhsim08G0150200 Rhododendron simsii HOM05D005585 ORTHO05D006905 4.2e-110 402.1 302 65.9
ECA236G2254 Erigeron canadensis HOM05D005585 ORTHO05D006905 5.5e-110 401.7 331 62.2
Thhalv10021015m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 4.7e-109 398.7 332 59.0
THA.LOC104821828 Tarenaya hassleriana HOM05D005585 ORTHO05D006905 7.9e-109 397.9 324 62.7
ClCG04G010560 Citrullus lanatus HOM05D005585 ORTHO05D006905 1.5e-107 393.7 323 64.1
HanXRQChr06g0178071 Helianthus annuus HOM05D005585 ORTHO05D006905 1.5e-107 393.7 335 61.2
A01p36480 Brassica napus HOM05D005585 ORTHO05D006905 7.4e-107 391.3 306 61.4
C05p48400 Brassica napus HOM05D005585 ORTHO05D006905 7.4e-107 391.3 315 60.3
Migut.I00267 Erythranthe guttata HOM05D005585 ORTHO05D006905 7.4e-107 391.3 345 59.1
BraA01t03712Z Brassica rapa HOM05D005585 ORTHO05D006905 9.7e-107 391.0 319 59.9
FAN04G2668 Fragaria x ananassa HOM05D005585 ORTHO05D006905 9.7e-107 391.0 311 63.7
BcaC05g28739 Brassica carinata HOM05D005585 ORTHO05D006905 1.7e-106 390.2 316 59.5
BolC5t33576H Brassica oleracea HOM05D005585 ORTHO05D006905 1.7e-106 390.2 316 59.5
BraA05t22021Z Brassica rapa HOM05D005585 ORTHO05D006905 2.2e-106 389.8 315 60.0
A05p31890 Brassica napus HOM05D005585 ORTHO05D006905 2.8e-106 389.4 314 59.6
FAN18G2151 Fragaria x ananassa HOM05D005585 ORTHO05D006905 3.7e-106 389.0 311 63.7
BcaB06g25853 Brassica carinata HOM05D005585 ORTHO05D006905 6.3e-106 388.3 316 60.1
Lsat_1_v5_gn_8_83620 Lactuca sativa HOM05D005585 ORTHO05D006905 1.4e-105 387.1 288 66.3
Oeu026263.1 Olea europaea HOM05D005585 ORTHO05D006905 1.4e-105 387.1 296 65.9
BcaB04g20808 Brassica carinata HOM05D005585 ORTHO05D006905 1.8e-105 386.7 325 58.5
Haze_18886 Corylus avellana HOM05D005585 ORTHO05D006905 3.1e-105 386.0 323 61.0
DCAR_003540 Daucus carota HOM05D005585 ORTHO05D006905 3.1e-105 386.0 308 64.0
AL3G31080 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 5.3e-105 385.2 293 62.1
Aa31LG8G4780 Aethionema arabicum HOM05D005585 ORTHO05D006905 9.1e-105 384.4 335 57.3
HPP92_019169 Vanilla planifolia HOM05D005585 ORTHO05D006905 1.2e-104 384.0 347 59.4
Aqoxy5G00865 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 4.5e-104 382.1 259 73.4
Nitab4.5_0001264g0050 Nicotiana tabacum HOM05D005585 ORTHO05D006905 5.9e-104 381.7 320 61.9
vmacro08951 Vaccinium macrocarpon HOM05D005585 ORTHO05D006905 5.9e-104 381.7 339 57.8
EL10Ac4g09125 Beta vulgaris HOM05D005585 ORTHO05D006905 1.0e-103 380.9 309 60.8
Sp3g16030 Schrenkiella parvula HOM05D005585 ORTHO05D006905 1.0e-103 380.9 324 57.7
arahy.Tifrunner.gnm1.ann1.E1YKD2 Arachis hypogaea HOM05D005585 ORTHO05D006905 3.8e-103 379.0 265 68.3
SalBow7G1179 Salvia bowleyana HOM05D005585 ORTHO05D006905 3.8e-103 379.0 309 61.5
Solyc03g118610.4 Solanum lycopersicum HOM05D005585 ORTHO05D006905 3.8e-103 379.0 309 62.5
AT3G17910 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 5.0e-103 378.6 293 61.1
TAR628G1367 Trochodendron aralioides HOM05D005585 ORTHO05D006905 8.5e-103 377.9 258 72.5
C01p46240 Brassica napus HOM05D005585 ORTHO05D006905 1.5e-102 377.1 319 58.0
BolC1t04585H Brassica oleracea HOM05D005585 ORTHO05D006905 1.5e-102 377.1 319 58.0
BcaC09g48755 Brassica carinata HOM05D005585 ORTHO05D006905 4.2e-102 375.6 319 58.3
Carub.0003s1764 Capsella rubella HOM05D005585 ORTHO05D006905 4.2e-102 375.6 285 62.1
CARHR093240 Cardamine hirsuta HOM05D005585 ORTHO05D006905 2.7e-101 372.9 334 55.7
CDE04G0750 Ceratophyllum demersum HOM05D001130 ORTHO05D006905 4.7e-101 372.1 334 62.0
Sc12g0007980 Simmondsia chinensis HOM05D005585 ORTHO05D006905 4.7e-101 372.1 280 63.6
Sopen03g037560 Solanum pennellii HOM05D005585 ORTHO05D006905 6.1e-101 371.7 309 61.8
Os03g0200700 Oryza sativa ssp. japonica HOM05D005585 ORTHO05D006905 8.0e-101 371.3 291 61.9
Sabra12G0031400 Salix brachista HOM05D005585 ORTHO05D006905 2.0e-99 366.7 288 63.2
Peaxi162Scf00314g00335 Petunia axillaris HOM05D005585 ORTHO05D006905 6.3e-98 361.7 258 70.2
Lj5C159G17 Lonicera japonica HOM05D005585 ORTHO05D006905 1.6e-96 357.1 246 71.1
Nitab4.5_0010397g0010 Nicotiana tabacum HOM05D005585 ORTHO05D006905 3.8e-95 352.4 266 65.8
Glyma.09G174400 Glycine max HOM05D005585 ORTHO05D006905 3.2e-94 349.4 258 66.7
VMungo0464G1491 Vigna mungo HOM05D005585 ORTHO05D006905 3.2e-94 349.4 249 69.5
Ah.06g192310 Amaranthus hybridus HOM05D005585 ORTHO05D008527 1.6e-93 347.1 258 64.3
Zm00001eb007820 Zea mays HOM05D005585 ORTHO05D006905 3.0e-92 342.8 253 65.6
Cpa.g.c34889 Carica papaya HOM05D005585 ORTHO05D006905 5.7e-91 338.6 222 72.1
unitig_27.g25108 Utricularia gibba HOM05D005585 ORTHO05D006905 2.5e-86 323.2 296 56.8
CAN.G843.48 Capsicum annuum HOM05D005585 ORTHO05D006905 9.5e-86 321.2 296 58.1
Hma1.2p1_0163F.1_g072980 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 2.3e-84 316.6 227 69.2
AUR62004935 Chenopodium quinoa HOM05D005585 ORTHO05D006905 3.0e-84 316.2 224 66.5
QL12p007232 Quercus lobata HOM05D005585 ORTHO05D006905 6.6e-79 298.5 402 43.8
Eucgr.B00986 Eucalyptus grandis HOM05D005585 ORTHO05D006905 7.5e-75 285.0 198 67.2
Mapoly0094s0071 Marchantia polymorpha HOM05D005585 ORTHO05D006905 2.1e-69 266.9 291 47.8
Cpa.g.sc3.377 Carica papaya HOM05D005585 ORTHO05D006905 5.2e-68 262.3 302 48.7
Gohir.D09G170128 Gossypium hirsutum HOM05D005585 ORTHO05D006905 3.4e-67 259.6 176 73.9
Pp3c5_4480 Physcomitrium patens HOM05D005585 ORTHO05D006905 9.8e-67 258.1 332 44.3
SMO147G0391 Selaginella moellendorffii HOM05D005585 ORTHO05D006905 1.1e-62 244.6 282 44.7
CARHR038140 Cardamine hirsuta HOM05D005585 ORTHO05D006905 2.9e-58 229.9 312 41.7
SGA_v2.0_scaffold58G20371 Striga asiatica HOM05D005585 ORTHO05D006905 1.3e-55 221.1 210 57.6
AL1G55160 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 1.9e-54 217.2 318 39.3
SEGI_34948 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 1.3e-50 204.5 153 62.7
AT1G48510 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 2.2e-50 203.8 274 41.6
Thhalv10011732m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 2.2e-50 203.8 246 41.5
TAR628G1286 Trochodendron aralioides HOM05D005585 ORTHO05D006905 6.4e-50 202.2 143 67.1
Carub.0001s3764 Capsella rubella HOM05D005585 ORTHO05D006905 6.6e-47 192.2 271 40.2
AagrBONN_evm.TU.Sc2ySwM_340.176 Anthoceros agrestis HOM05D005585 ORTHO05D006905 1.2e-45 188.0 257 42.0
CBR_g50834 Chara braunii HOM05D002601 ORTHO05D002884 1.6e-45 187.6 388 33.8
BcaB04g20806 Brassica carinata HOM05D005585 ORTHO05D006905 3.1e-44 183.3 181 51.9
Carub.0001s3763 Capsella rubella HOM05D005585 ORTHO05D006905 7.1e-41 172.2 300 36.3
FAN13G1174 Fragaria x ananassa HOM05D005585 ORTHO05D006905 2.5e-38 163.7 161 55.3
SEGI_19570 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 2.6e-35 153.7 127 58.3
BcaB08g34867 Brassica carinata HOM05D005585 ORTHO05D006905 3.4e-35 153.3 240 36.7
Zm00001eb338430 Zea mays HOM05D005585 ORTHO05D006905 4.5e-35 152.9 92 75.0
PRCOL_00002102 Prasinoderma coloniale HOM05D005585 ORTHO05D006905 2.9e-34 150.2 320 29.4
Zm00001eb099110 Zea mays HOM05D005585 ORTHO05D006905 9.3e-33 145.2 149 49.7
Gohir.D09G170071 Gossypium hirsutum HOM05D005585 ORTHO05D006905 2.7e-32 143.7 155 51.6
Cre16.g664700 Chlamydomonas reinhardtii HOM05D005585 ORTHO05D006905 7.9e-24 115.5 311 28.0
CBR_g629 Chara braunii HOM05D005585 ORTHO05D006905 8.2e-21 105.5 204 36.3
MCO16G342 Micromonas commoda HOM05D005585 ORTHO05D006905 5.3e-12 76.3 224 25.4
CDE07G0810 Ceratophyllum demersum HOM05D005585 ORTHO05D006905 5.0e-10 69.7 83 49.4


User provided reference genes

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