Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30423 Nelumbo nucifera HOM05D005496 ORTHO05D006677 1.4e-125 453.0 226 100.0
TAR376G0359 Trochodendron aralioides HOM05D005496 ORTHO05D006677 1.3e-112 409.8 249 81.1
TAR628G1491 Trochodendron aralioides HOM05D005496 ORTHO05D006677 8.6e-112 407.1 249 80.7
Aqoxy6G02861 Aquilegia oxysepala HOM05D005496 ORTHO05D006677 5.2e-109 397.9 249 79.1
Dinv15765 Davidia involucrata HOM05D005496 ORTHO05D006677 1.2e-108 396.7 248 78.2
CSS0021038 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 9.8e-108 393.7 248 77.0
GSVIVG01003155001 Vitis vinifera HOM05D005496 ORTHO05D006677 1.1e-106 390.2 255 75.7
CSS0023946 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 2.4e-106 389.0 248 76.6
CSS0028960 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 2.4e-106 389.0 248 76.6
Dinv42193 Davidia involucrata HOM05D005496 ORTHO05D006677 2.4e-106 389.0 248 77.0
PSO675G7162 Papaver somniferum HOM05D005496 ORTHO05D006677 3.2e-106 388.7 249 76.7
PSO541G0750 Papaver somniferum HOM05D005496 ORTHO05D006677 9.2e-106 387.1 249 77.5
DCAR_021987 Daucus carota HOM05D005496 ORTHO05D006677 1.2e-105 386.7 249 78.3
CiPaw.06G169300 Carya illinoinensis HOM05D005496 ORTHO05D006677 6.0e-105 384.4 250 75.6
Thecc.02G107900 Theobroma cacao HOM05D005496 ORTHO05D006677 3.9e-104 381.7 249 76.7
Cpa.g.sc106.90 Carica papaya HOM05D005496 ORTHO05D006677 6.6e-104 380.9 249 76.3
Atru.chr5.2543 Acer truncatum HOM05D005496 ORTHO05D006677 8.6e-104 380.6 250 76.8
Atru.chr5.2566 Acer truncatum HOM05D005496 ORTHO05D006677 8.6e-104 380.6 250 76.8
Cc02_g19260 Coffea canephora HOM05D005496 ORTHO05D006677 1.1e-103 380.2 260 71.9
Sc18g0005590 Simmondsia chinensis HOM05D005496 ORTHO05D006677 1.9e-103 379.4 250 75.2
Gohir.A12G022100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 3.3e-103 378.6 249 76.3
Gohir.D12G022500 Gossypium hirsutum HOM05D005496 ORTHO05D006677 3.3e-103 378.6 249 76.3
Solyc01g107600.3 Solanum lycopersicum HOM05D005496 ORTHO05D006677 7.3e-103 377.5 250 74.0
TWI79G0817 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 7.3e-103 377.5 249 75.5
CANSAT25G1824 Cannabis sativa HOM05D005496 ORTHO05D006677 1.6e-102 376.3 251 74.9
CANSAT25G2648 Cannabis sativa HOM05D005496 ORTHO05D006677 1.6e-102 376.3 251 74.9
CiPaw.05G011600 Carya illinoinensis HOM05D005496 ORTHO05D006677 2.1e-102 375.9 250 74.4
Sopen01g049790 Solanum pennellii HOM05D005496 ORTHO05D006677 2.8e-102 375.6 250 74.0
TWI75G0729 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 2.8e-102 375.6 249 75.1
Actinidia17481 Actinidia chinensis HOM05D005496 ORTHO05D006677 3.6e-102 375.2 248 72.2
PGSC0003DMG402025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 3.6e-102 375.2 250 73.6
Actinidia27972 Actinidia chinensis HOM05D005496 ORTHO05D006677 8.1e-102 374.0 275 68.4
MELO3C018493.2 Cucumis melo HOM05D005496 ORTHO05D006677 1.4e-101 373.2 249 73.9
Manes.07G069764 Manihot esculenta HOM05D005496 ORTHO05D006677 2.3e-101 372.5 249 74.7
CsaV3_7G008130 Cucumis sativus L. HOM05D005496 ORTHO05D006677 3.1e-101 372.1 249 73.1
ClCG02G006320 Citrullus lanatus HOM05D005496 ORTHO05D006677 5.2e-101 371.3 249 73.1
MD05G1089700 Malus domestica HOM05D005496 ORTHO05D006677 5.2e-101 371.3 249 73.9
Potri.009G095900 Populus trichocarpa HOM05D005496 ORTHO05D006677 5.2e-101 371.3 251 73.3
MSTRG.5341 Avicennia marina HOM05D005496 ORTHO05D006677 8.9e-101 370.5 251 72.9
Sed0023992 Sechium edule HOM05D005496 ORTHO05D006677 1.2e-100 370.2 249 71.5
Gohir.D01G008100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 1.5e-100 369.8 249 73.9
Prupe.8G135000 Prunus persica HOM05D005496 ORTHO05D006677 1.5e-100 369.8 249 73.9
FvH4_2g05170 Fragaria vesca HOM05D005496 ORTHO05D006677 2.6e-100 369.0 250 73.2
THA.LOC104807241 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 4.4e-100 368.2 249 71.9
ATR0691G184 Amborella trichopoda HOM05D005496 ORTHO05D006677 7.5e-100 367.5 249 71.5
RcHm_v2.0_Chr6g0255081 Rosa chinensis HOM05D005496 ORTHO05D006677 9.8e-100 367.1 250 73.2
Sed0010088 Sechium edule HOM05D005496 ORTHO05D006677 3.7e-99 365.2 250 71.6
PGR142G1113 Punica granatum HOM05D005496 ORTHO05D006677 4.9e-99 364.8 249 72.3
Eucgr.E02959 Eucalyptus grandis HOM05D005496 ORTHO05D006677 8.3e-99 364.0 249 72.7
Potri.001G300100 Populus trichocarpa HOM05D005496 ORTHO05D006677 1.1e-98 363.6 251 72.5
Rhsim11G0160100 Rhododendron simsii HOM05D005496 ORTHO05D006677 1.1e-98 363.6 290 64.8
MSTRG.27744 Avicennia marina HOM05D005496 ORTHO05D006677 2.4e-98 362.5 250 72.0
Lalb_Chr06g0165461 Lupinus albus HOM05D005496 ORTHO05D006677 3.2e-98 362.1 249 72.7
MD10G1096900 Malus domestica HOM05D005496 ORTHO05D006677 4.1e-98 361.7 249 72.3
AT2G15240 Arabidopsis thaliana HOM05D005496 ORTHO05D006677 5.4e-98 361.3 249 70.7
Thhalv10022824m.g Eutrema salsugineum HOM05D005496 ORTHO05D006677 5.4e-98 361.3 249 70.3
FAN27G2869 Fragaria x ananassa HOM05D005496 ORTHO05D006677 5.4e-98 361.3 271 67.9
Sabra16G0188400 Salix brachista HOM05D005496 ORTHO05D006677 5.4e-98 361.3 256 70.7
Migut.N01167 Erythranthe guttata HOM05D005496 ORTHO05D006677 7.1e-98 360.9 250 71.2
Gorai.002G009400 Gossypium raimondii HOM05D005496 ORTHO05D006677 7.1e-98 360.9 249 73.1
Lj5g0001757 Lotus japonicus HOM05D005496 ORTHO05D006677 7.1e-98 360.9 249 71.9
Peaxi162Scf00016g02325 Petunia axillaris HOM05D005496 ORTHO05D006677 7.1e-98 360.9 276 66.3
Phvul.007G039900 Phaseolus vulgaris HOM05D005496 ORTHO05D006677 7.1e-98 360.9 252 71.4
TPR.G30567 Trifolium pratense HOM05D005496 ORTHO05D006677 9.2e-98 360.5 253 71.9
Ca_11075_v3 Cicer arietinum L. HOM05D005496 ORTHO05D006677 1.2e-97 360.1 253 71.1
AL3G46950 Arabidopsis lyrata HOM05D005496 ORTHO05D006677 1.6e-97 359.8 249 70.3
Medtr1g107430 Medicago truncatula HOM05D005496 ORTHO05D006677 2.1e-97 359.4 254 71.3
Glyma.10G262300 Glycine max HOM05D005496 ORTHO05D006677 4.6e-97 358.2 252 71.0
Carub.0003s2908 Capsella rubella HOM05D005496 ORTHO05D006677 7.8e-97 357.5 249 69.5
HanXRQChr16g0509221 Helianthus annuus HOM05D005496 ORTHO05D006677 1.0e-96 357.1 248 71.8
Lalb_Chr21g0308341 Lupinus albus HOM05D005496 ORTHO05D006677 1.0e-96 357.1 254 71.3
Sp3g28490 Schrenkiella parvula HOM05D005496 ORTHO05D006677 1.0e-96 357.1 249 69.5
BcaB07g31795 Brassica carinata HOM05D005496 ORTHO05D006677 1.3e-96 356.7 249 69.5
C07p08630 Brassica napus HOM05D005496 ORTHO05D006677 3.0e-96 355.5 249 69.1
THA.LOC104819553 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 3.0e-96 355.5 249 70.3
Glyma.20G128700 Glycine max HOM05D005496 ORTHO05D006677 3.9e-96 355.1 255 69.8
BolC9t54157H Brassica oleracea HOM05D005496 ORTHO05D006677 6.6e-96 354.4 248 69.4
arahy.Tifrunner.gnm1.ann1.7NM92S Arachis hypogaea HOM05D005496 ORTHO05D006677 8.6e-96 354.0 244 73.4
arahy.Tifrunner.gnm1.ann1.CE7Z9D Arachis hypogaea HOM05D005496 ORTHO05D006677 1.5e-95 353.2 244 73.4
ECA236G0884 Erigeron canadensis HOM05D005496 ORTHO05D006677 1.5e-95 353.2 248 71.4
BraA07t28330Z Brassica rapa HOM05D005496 ORTHO05D006677 2.1e-94 349.4 252 67.5
A07p05380 Brassica napus HOM05D005496 ORTHO05D006677 6.2e-94 347.8 251 67.7
Aa31LG8G13100 Aethionema arabicum HOM05D005496 ORTHO05D006677 2.3e-93 345.9 239 71.1
BolC7t41274H Brassica oleracea HOM05D005496 ORTHO05D006677 3.1e-93 345.5 234 70.5
HanXRQChr10g0292361 Helianthus annuus HOM05D005496 ORTHO05D006677 4.4e-92 341.7 248 69.4
Os09g0109500 Oryza sativa ssp. japonica HOM05D005496 ORTHO05D006677 4.6e-89 331.6 247 70.0
Duzib052G0798 Durio zibethinus HOM05D005496 ORTHO05D006677 1.0e-88 330.5 226 76.5
CARHR105630 Cardamine hirsuta HOM05D005496 ORTHO05D006677 1.3e-88 330.1 222 70.7
Pp3c22_1600 Physcomitrium patens HOM05D005496 ORTHO05D006677 1.3e-88 330.1 251 65.7
FAN15G3658 Fragaria x ananassa HOM05D005496 ORTHO05D006677 3.9e-88 328.6 248 67.7
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 5.1e-88 328.2 222 70.3
FAN24G2091 Fragaria x ananassa HOM05D005496 ORTHO05D006677 1.1e-87 327.0 227 72.2
Mapoly0001s0126 Marchantia polymorpha HOM05D005496 ORTHO05D006677 3.3e-87 325.5 248 64.5
A09p10680 Brassica napus HOM05D005496 ORTHO05D006677 4.3e-87 325.1 231 68.4
C09p12670 Brassica napus HOM05D005496 ORTHO05D006677 4.3e-87 325.1 231 68.4
Lsat_1_v5_gn_7_86500 Lactuca sativa HOM05D005496 ORTHO05D006677 1.6e-86 323.2 221 71.9
Pp3c21_16720 Physcomitrium patens HOM05D005496 ORTHO05D006677 2.4e-85 319.3 251 62.9
BraA09t36711Z Brassica rapa HOM05D005496 ORTHO05D006677 3.8e-83 312.0 254 62.2
QL11p033686 Quercus lobata HOM05D005496 ORTHO05D006677 3.2e-82 308.9 449 42.8
Ciclev10029109m.g Citrus clementina HOM05D005496 ORTHO05D006677 2.7e-81 305.8 208 75.0
Gohir.A01G008000 Gossypium hirsutum HOM05D005496 ORTHO05D006677 1.3e-80 303.5 253 66.0
Gorai.008G022900 Gossypium raimondii HOM05D005496 ORTHO05D006677 3.0e-80 302.4 219 72.6
Lj5C214T6 Lonicera japonica HOM05D005496 ORTHO05D006677 3.0e-80 302.4 179 80.4
Zm00001eb307360 Zea mays HOM05D005496 ORTHO05D006677 1.1e-79 300.4 227 70.9
SMO358G0568 Selaginella moellendorffii HOM05D005496 ORTHO05D006677 1.9e-79 299.7 249 60.2
Psat6g219080 Pisum sativum HOM05D005496 ORTHO05D006677 4.4e-76 288.5 237 64.1
Nitab4.5_0002815g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 5.8e-76 288.1 225 66.2
AagrBONN_evm.TU.Sc2ySwM_228.4354 Anthoceros agrestis HOM05D005496 ORTHO05D006677 2.9e-75 285.8 242 59.9
unitig_699.g19872 Utricularia gibba HOM05D005496 ORTHO05D006677 1.9e-74 283.1 208 69.7
Actinidia00410 Actinidia chinensis HOM05D005496 ORTHO05D006677 7.3e-71 271.2 240 59.2
Hund00151 Selenicereus undatus HOM05D005496 ORTHO05D006677 1.3e-70 270.4 190 70.5
CDE02G0272 Ceratophyllum demersum HOM05D005496 ORTHO05D006677 2.8e-70 269.2 249 56.2
Duzib132G0296 Durio zibethinus HOM05D005496 ORTHO05D006677 2.4e-69 266.2 237 62.9
BcaB03g16270 Brassica carinata HOM05D005496 ORTHO05D006677 5.3e-69 265.0 248 54.8
Sabra09G0073700 Salix brachista HOM05D005496 ORTHO05D006677 9.9e-68 260.8 260 54.6
AUR62039077 Chenopodium quinoa HOM05D005496 ORTHO05D006677 4.9e-67 258.5 268 55.2
BcaC06g36040 Brassica carinata HOM05D005496 ORTHO05D006677 1.1e-66 257.3 195 63.6
vmacro02003 Vaccinium macrocarpon HOM05D005496 ORTHO05D006677 4.3e-63 245.4 335 46.3
Actinidia05496 Actinidia chinensis HOM05D005496 ORTHO05D006677 4.0e-61 238.8 278 50.4
SalBow3G0726 Salvia bowleyana HOM05D005496 ORTHO05D006677 6.9e-61 238.0 183 65.6
PGSC0003DMG401025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 3.8e-59 232.3 210 60.5
Cre06.g250350 Chlamydomonas reinhardtii HOM05D005496 ORTHO05D006677 1.4e-58 230.3 227 48.5
EL10Ac9g22275 Beta vulgaris HOM05D005496 ORTHO05D006677 4.3e-55 218.8 157 68.8
MCO15G042 Micromonas commoda HOM05D005496 ORTHO05D006677 5.7e-55 218.4 228 48.2
AUR62010309 Chenopodium quinoa HOM05D005496 ORTHO05D006677 1.3e-54 217.2 207 56.0
SGA_v2.0_scaffold13G06610 Striga asiatica HOM05D005496 ORTHO05D006677 1.4e-53 213.8 157 67.5
Oeu056146.1 Olea europaea HOM05D005496 ORTHO05D006677 2.0e-52 209.9 127 78.0
HPP92_011625 Vanilla planifolia HOM05D005496 ORTHO05D006677 5.8e-52 208.4 125 76.8
PRCOL_00006227 Prasinoderma coloniale HOM05D005496 ORTHO05D006677 2.9e-51 206.1 243 45.3
BolC7t41273H Brassica oleracea HOM05D005496 ORTHO05D006677 2.6e-44 183.0 115 74.8
FAN20G2824 Fragaria x ananassa HOM05D005496 ORTHO05D006677 8.5e-43 177.9 102 83.3
SEGI_40705 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 3.2e-42 176.0 104 79.8
Ah.01g018260 Amaranthus hybridus HOM05D005496 ORTHO05D006677 3.9e-40 169.1 157 57.3
SEGI_21612 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 5.7e-39 165.2 91 83.5
Haze_10172 Corylus avellana HOM05D005496 ORTHO05D006677 3.1e-37 159.5 129 64.3
CBR_g4069 Chara braunii HOM05D005496 ORTHO05D006677 3.8e-35 152.5 96 72.9
COL.COLO4_32594 Corchorus olitorius HOM05D005496 ORTHO05D006677 3.8e-35 152.5 151 55.6
Nitab4.5_0005392g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 4.2e-34 149.1 225 44.9
CBR_g4071 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-29 134.0 90 73.3
HPP92_026155 Vanilla planifolia HOM05D005496 ORTHO05D006677 2.7e-17 93.2 51 80.4


User provided reference genes

Program Settings