Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 8.1e-129 463.8 236 100.0
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 1.1e-112 410.2 233 87.6
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 9.0e-112 407.1 233 86.7
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 4.4e-111 404.8 236 84.7
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 2.2e-110 402.5 236 84.3
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 1.1e-109 400.2 233 84.5
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 7.8e-108 394.0 236 82.2
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 3.0e-107 392.1 233 83.3
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 8.7e-107 390.6 236 81.8
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 2.5e-106 389.0 236 80.9
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 4.3e-106 388.3 233 81.1
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 9.6e-106 387.1 236 80.5
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 2.1e-105 386.0 236 78.4
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 3.6e-105 385.2 236 79.7
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 6.2e-105 384.4 234 80.8
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 1.1e-104 383.6 234 80.8
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 5.3e-104 381.3 236 78.0
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 5.3e-104 381.3 236 78.0
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 6.9e-104 380.9 234 81.2
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 1.2e-103 380.2 233 80.3
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 1.5e-103 379.8 236 79.7
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 2.6e-103 379.0 235 79.1
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 9.9e-103 377.1 234 80.3
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 1.7e-102 376.3 236 77.5
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 3.8e-102 375.2 233 79.8
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 4.9e-102 374.8 236 77.5
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 7.1e-101 370.9 238 77.7
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 9.3e-101 370.5 236 77.1
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 2.1e-100 369.4 237 76.8
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 2.1e-100 369.4 236 77.1
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 2.7e-100 369.0 282 67.7
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 3.5e-100 368.6 236 77.1
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 4.6e-100 368.2 236 77.1
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 7.9e-100 367.5 236 77.1
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 3.9e-99 365.2 236 76.7
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 6.7e-99 364.4 236 76.3
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 6.7e-99 364.4 234 77.4
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 1.5e-98 363.2 307 64.5
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 3.3e-98 362.1 236 77.5
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 4.3e-98 361.7 238 76.1
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 1.6e-97 359.8 234 77.8
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 2.1e-97 359.4 233 76.0
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 2.1e-97 359.4 236 71.2
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 2.8e-97 359.0 234 75.2
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 3.7e-97 358.6 260 69.2
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 3.7e-97 358.6 236 75.0
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 3.7e-97 358.6 236 75.0
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 4.8e-97 358.2 236 75.0
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 8.1e-97 357.5 236 73.7
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 8.1e-97 357.5 236 75.8
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 8.1e-97 357.5 234 75.6
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 1.4e-96 356.7 236 74.6
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 1.4e-96 356.7 236 74.6
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 1.4e-96 356.7 233 75.1
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 2.4e-96 355.9 236 75.0
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 3.1e-96 355.5 205 86.8
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 9.0e-96 354.0 233 75.1
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 9.0e-96 354.0 233 75.1
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 9.0e-96 354.0 225 76.9
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 9.0e-96 354.0 238 73.1
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 2.6e-95 352.4 238 72.3
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 3.4e-95 352.1 229 75.1
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 3.4e-95 352.1 236 73.3
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 5.8e-95 351.3 204 86.3
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 7.6e-95 350.9 204 85.8
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.0e-94 350.5 236 72.9
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 1.0e-94 350.5 238 73.9
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.0e-94 350.5 220 80.9
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 1.3e-94 350.1 233 76.0
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 2.2e-94 349.4 272 65.8
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 3.8e-94 348.6 236 72.9
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 8.4e-94 347.4 234 71.8
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.1e-93 347.1 232 73.7
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 9.3e-93 344.0 236 70.3
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 1.6e-92 343.2 201 83.6
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 2.7e-92 342.4 231 75.8
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 1.3e-91 340.1 238 71.0
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 1.8e-91 339.7 236 70.3
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 1.5e-90 336.7 210 81.4
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 1.5e-90 336.7 206 80.1
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 3.3e-90 335.5 217 76.5
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 1.8e-88 329.7 206 78.6
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 2.4e-88 329.3 269 65.8
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 4.1e-88 328.6 233 67.8
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 2.6e-87 325.9 234 67.9
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 4.5e-87 325.1 234 70.9
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 2.9e-86 322.4 239 67.4
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 6.5e-86 321.2 234 66.7
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 4.2e-85 318.5 240 64.6
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 9.3e-85 317.4 203 77.3
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 4.6e-84 315.1 233 64.8
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 6.1e-84 314.7 199 78.4
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 7.9e-84 314.3 236 69.1
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 1.5e-82 310.1 234 69.7
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 1.5e-82 310.1 234 69.7
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 7.4e-82 307.8 227 67.4
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.2e-81 306.2 234 66.2
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 2.2e-81 306.2 196 75.5
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 4.8e-81 305.1 187 79.7
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.3e-78 297.0 211 71.6
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 1.7e-78 296.6 235 62.1
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 2.9e-78 295.8 223 64.1
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 5.0e-78 295.0 235 60.4
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 5.0e-78 295.0 235 60.4
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 6.5e-78 294.7 235 61.3
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 1.1e-77 293.9 235 60.0
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 1.4e-77 293.5 188 78.7
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 4.2e-77 292.0 239 59.8
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 4.2e-77 292.0 208 73.6
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 2.7e-76 289.3 166 84.9
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 3.0e-75 285.8 222 60.8
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 3.9e-75 285.4 236 60.2
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 5.7e-74 281.6 167 83.2
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 2.2e-73 279.6 226 59.7
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 3.7e-73 278.9 188 71.3
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.0e-70 270.8 219 58.4
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 5.0e-70 268.5 167 80.8
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 5.0e-70 268.5 239 59.8
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.6e-68 263.5 257 59.1
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 3.3e-66 255.8 151 83.4
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 5.7e-66 255.0 217 59.4
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 5.3e-64 248.4 226 55.8
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 1.3e-62 243.8 147 81.0
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.9e-61 240.0 210 60.5
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 1.0e-54 217.6 169 60.9
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 3.0e-51 206.1 126 81.0
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 3.1e-48 196.1 236 48.7
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 9.1e-48 194.5 135 69.6
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.6e-47 193.7 135 70.4
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 9.4e-45 184.5 233 45.5
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 1.2e-42 177.6 111 77.5
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 4.1e-40 169.1 233 45.9
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 1.2e-39 167.5 106 76.4
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 1.6e-39 167.2 102 80.4
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 1.3e-38 164.1 104 76.9
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 4.4e-34 149.1 111 69.4
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 4.9e-33 145.6 262 38.5
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 3.2e-32 142.9 143 49.7
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 3.2e-32 142.9 234 35.9
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 7.8e-31 138.3 76 81.6
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 8.6e-30 134.8 209 36.4
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 6.4e-25 118.6 231 35.1
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 6.4e-25 118.6 231 35.1
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 1.0e-22 111.3 74 70.3
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 1.2e-20 104.4 106 55.7
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 1.8e-19 100.5 68 73.5
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 1.4e-16 90.9 195 29.7
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 6.6e-14 82.0 49 77.6
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 3.3e-13 79.7 51 74.5
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 4.3e-13 79.3 53 69.8
ATR0706G173 Amborella trichopoda HOM05D004637 ORTHO05D005320 7.3e-13 78.6 56 64.3
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.6e-12 77.4 90 43.3
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 2.8e-12 76.6 52 67.3
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 7.6e-10 68.6 49 63.3
HPP92_014526 Vanilla planifolia HOM05D004637 ORTHO05D005320 3.7e-09 66.2 48 62.5
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 5.4e-08 62.4 50 54.0
BcaB04g17066 Brassica carinata HOM05D037786 ORTHO05D005320 6.0e-07 58.9 46 63.0


User provided reference genes

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