Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 2.0e-197 692.2 345 100.0
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 6.8e-161 570.9 343 80.8
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 1.1e-158 563.5 344 79.7
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 1.0e-156 557.0 343 78.4
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 5.1e-156 554.7 343 78.7
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 1.1e-155 553.5 344 77.9
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 1.1e-155 553.5 343 77.8
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 1.9e-155 552.7 343 77.0
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 7.3e-155 550.8 342 81.3
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 1.4e-153 546.6 343 75.8
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 1.8e-153 546.2 373 72.4
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 5.3e-153 544.7 347 76.9
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 6.9e-153 544.3 343 75.8
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 2.0e-152 542.7 359 73.3
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 2.6e-152 542.3 343 76.1
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 3.4e-152 542.0 343 75.2
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.3e-151 540.0 343 75.2
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 1.7e-151 539.7 343 75.2
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 8.4e-151 537.3 347 75.5
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 4.2e-150 535.0 342 75.1
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 5.4e-150 534.6 372 71.5
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 1.2e-149 533.5 343 74.6
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 1.2e-149 533.5 343 74.9
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 2.1e-149 532.7 347 74.6
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 1.8e-148 529.6 352 74.7
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 2.3e-148 529.3 331 77.6
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 3.0e-148 528.9 347 73.5
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 5.1e-148 528.1 345 77.1
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 5.1e-148 528.1 304 82.2
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 6.7e-148 527.7 345 72.5
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 6.7e-148 527.7 344 73.8
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 1.5e-147 526.6 352 74.1
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 1.5e-147 526.6 348 76.4
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 1.5e-147 526.6 343 75.2
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 1.9e-147 526.2 346 75.1
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 3.3e-147 525.4 343 72.9
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 4.3e-147 525.0 347 73.2
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 7.4e-147 524.2 343 72.6
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 1.6e-146 523.1 345 73.3
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 3.6e-146 521.9 343 73.5
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 1.8e-145 519.6 345 73.9
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 2.4e-145 519.2 338 76.3
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 3.1e-145 518.8 346 74.0
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 3.1e-145 518.8 350 72.3
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 4.0e-145 518.5 338 76.3
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 9.0e-145 517.3 345 72.5
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 9.0e-145 517.3 347 73.8
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 1.5e-144 516.5 344 74.7
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 1.5e-144 516.5 344 75.6
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 2.6e-144 515.8 345 73.0
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 3.4e-144 515.4 326 76.4
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 4.5e-144 515.0 351 73.5
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 5.8e-144 514.6 344 73.5
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 1.7e-143 513.1 344 75.3
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 1.7e-143 513.1 344 75.3
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 1.7e-143 513.1 346 74.3
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 2.2e-143 512.7 344 75.0
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 2.2e-143 512.7 338 77.2
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 3.8e-143 511.9 344 75.3
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 4.9e-143 511.5 343 72.0
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 4.9e-143 511.5 343 72.9
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 1.1e-142 510.4 343 73.2
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 4.2e-142 508.4 321 75.7
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 4.2e-142 508.4 346 72.3
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 7.1e-142 507.7 346 74.9
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 7.1e-142 507.7 304 80.9
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 6.7e-140 501.1 344 69.2
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 1.1e-139 500.4 302 79.5
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 1.9e-139 499.6 319 75.2
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 2.5e-139 499.2 345 70.7
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 5.6e-139 498.0 331 74.9
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 5.6e-139 498.0 345 70.7
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 1.3e-138 496.9 341 74.5
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 4.5e-136 488.4 377 65.0
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 5.8e-136 488.0 344 70.9
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.3e-135 486.9 303 77.9
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 7.9e-133 477.6 351 69.5
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 3.0e-132 475.7 299 76.3
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 1.1e-131 473.8 308 75.3
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 1.5e-131 473.4 325 71.7
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 1.9e-131 473.0 359 65.7
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 5.7e-131 471.5 334 68.6
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 6.3e-130 468.0 314 73.9
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 3.1e-129 465.7 351 67.8
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 5.3e-129 464.9 324 71.9
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 1.2e-128 463.8 314 72.9
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 2.0e-128 463.0 321 71.0
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 4.5e-128 461.8 314 72.6
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 1.7e-127 459.9 321 71.0
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 1.7e-127 459.9 313 69.6
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 2.9e-127 459.1 305 73.8
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 2.9e-127 459.1 310 74.2
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 8.5e-127 457.6 314 71.3
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 2.5e-126 456.1 292 75.3
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 2.7e-125 452.6 309 68.9
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 4.6e-125 451.8 283 77.4
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 1.0e-124 450.7 277 75.8
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 1.8e-124 449.9 312 69.9
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 3.0e-124 449.1 282 78.7
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 4.8e-122 441.8 284 75.0
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 2.4e-121 439.5 352 62.8
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 6.9e-121 438.0 313 67.1
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 6.9e-121 438.0 341 65.4
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 2.0e-120 436.4 278 75.5
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 2.9e-119 432.6 313 66.1
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 5.5e-118 428.3 326 64.4
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 5.5e-118 428.3 328 64.0
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 7.2e-118 427.9 304 69.4
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 2.1e-117 426.4 328 64.0
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 3.6e-117 425.6 328 64.0
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 3.6e-117 425.6 328 64.0
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 3.6e-117 425.6 339 62.2
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 6.7e-116 421.4 328 63.4
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 6.7e-116 421.4 337 62.6
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 1.1e-115 420.6 340 62.1
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 6.3e-114 414.8 342 65.2
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 5.9e-112 408.3 324 65.7
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 3.2e-110 402.5 261 72.4
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 2.1e-109 399.8 306 67.0
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 2.3e-108 396.4 360 60.0
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 1.5e-107 393.7 351 60.7
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 1.5e-107 393.7 284 65.8
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 5.7e-107 391.7 383 55.4
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 1.7e-106 390.2 344 61.6
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 4.8e-106 388.7 351 59.8
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 4.5e-104 382.1 249 74.3
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 1.3e-103 380.6 345 59.4
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 2.9e-103 379.4 311 57.9
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 8.5e-103 377.9 303 59.4
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 7.5e-99 364.8 303 57.4
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 1.6e-96 357.1 352 53.1
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 1.9e-94 350.1 340 51.8
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 2.8e-90 336.3 315 54.0
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.8e-89 333.6 229 74.2
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 5.4e-89 332.0 237 67.1
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 1.3e-87 327.4 335 50.4
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 1.5e-86 323.9 203 78.8
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 1.9e-86 323.6 233 70.8
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 1.0e-84 317.8 283 58.0
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 3.5e-80 302.8 316 54.7
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 8.9e-76 288.1 162 84.0
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 2.5e-62 243.4 173 64.2
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 2.5e-62 243.4 173 64.2
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 3.6e-61 239.6 138 81.9
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 3.8e-50 203.0 111 86.5
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 8.1e-45 185.3 116 73.3
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 2.6e-43 180.3 112 77.7
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 7.6e-43 178.7 354 30.8
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 1.7e-39 167.5 312 35.6
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 2.0e-35 154.1 163 52.8
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 1.3e-34 151.4 332 32.5
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 1.3e-34 151.4 129 61.2
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 3.2e-25 120.2 361 30.7
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 3.2e-25 120.2 85 69.4
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 1.3e-23 114.8 165 42.4
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 9.0e-20 102.1 286 28.7
CDE01G0594 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 6.5e-18 95.9 105 46.7
FAN23G0103 Fragaria x ananassa HOM05D004652 ORTHO05D198901 9.3e-09 65.5 118 37.3


User provided reference genes

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