Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30328 Nelumbo nucifera HOM05D006253 ORTHO05D007666 9.5e-87 323.6 172 100.0
Thecc.02G100600 Theobroma cacao HOM05D006253 ORTHO05D007666 4.4e-76 288.1 172 86.0
TAR376G0695 Trochodendron aralioides HOM05D006253 ORTHO05D007666 4.4e-76 288.1 172 87.8
Gohir.A01G006900 Gossypium hirsutum HOM05D006253 ORTHO05D007666 6.4e-75 284.3 172 84.9
Gorai.002G008000 Gossypium raimondii HOM05D006253 ORTHO05D007666 1.1e-74 283.5 172 84.9
Prupe.8G124200 Prunus persica HOM05D006253 ORTHO05D007666 4.1e-74 281.6 174 85.1
Gohir.D01G007000 Gossypium hirsutum HOM05D006253 ORTHO05D007666 2.7e-73 278.9 172 83.7
CiPaw.05G006400 Carya illinoinensis HOM05D006253 ORTHO05D007666 3.5e-73 278.5 172 83.1
Potri.004G141400 Populus trichocarpa HOM05D006253 ORTHO05D007666 7.8e-73 277.3 173 83.2
GSVIVG01031749001 Vitis vinifera HOM05D006253 ORTHO05D007666 7.8e-73 277.3 172 83.7
Sc14g0002650 Simmondsia chinensis HOM05D006253 ORTHO05D007666 1.7e-72 276.2 172 83.1
Manes.01G064000 Manihot esculenta HOM05D006253 ORTHO05D007666 2.3e-72 275.8 172 83.1
Sabra04G0093200 Salix brachista HOM05D006253 ORTHO05D007666 2.3e-72 275.8 173 82.7
COL.COLO4_32658 Corchorus olitorius HOM05D006253 ORTHO05D007666 3.0e-72 275.4 172 83.1
QL11p035967 Quercus lobata HOM05D006253 ORTHO05D007666 3.0e-72 275.4 171 83.6
Hma1.2p1_0370F.1_g137800 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 3.9e-72 275.0 172 84.3
Actinidia12952 Actinidia chinensis HOM05D006253 ORTHO05D007666 5.1e-72 274.6 173 85.0
MD05G1080500 Malus domestica HOM05D006253 ORTHO05D007666 6.6e-72 274.2 173 82.7
RcHm_v2.0_Chr6g0257111 Rosa chinensis HOM05D006253 ORTHO05D007666 1.1e-71 273.5 174 82.2
VMungo1080G0444 Vigna mungo HOM05D006253 ORTHO05D007666 1.1e-71 273.5 172 82.0
arahy.Tifrunner.gnm1.ann1.ETD7FQ Arachis hypogaea HOM05D006253 ORTHO05D007666 1.9e-71 272.7 172 80.8
Glyma.04G194000 Glycine max HOM05D006253 ORTHO05D007666 3.3e-71 271.9 172 82.6
Rhsim03G0192100 Rhododendron simsii HOM05D006253 ORTHO05D007666 5.6e-71 271.2 172 82.6
Lj6g0019810 Lotus japonicus HOM05D006253 ORTHO05D007666 1.2e-70 270.0 172 82.0
FvH4_2g06110 Fragaria vesca HOM05D006253 ORTHO05D007666 2.1e-70 269.2 174 80.5
FAN24G2487 Fragaria x ananassa HOM05D006253 ORTHO05D007666 2.1e-70 269.2 174 80.5
Lj5C209T13 Lonicera japonica HOM05D006253 ORTHO05D007666 6.2e-70 267.7 172 80.2
Phvul.005G182700 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 1.1e-69 266.9 172 80.2
Ciclev10029390m.g Citrus clementina HOM05D006253 ORTHO05D007666 1.4e-69 266.5 173 80.9
Lalb_Chr25g0286231 Lupinus albus HOM05D006253 ORTHO05D007666 4.0e-69 265.0 172 78.5
FAN27G3246 Fragaria x ananassa HOM05D006253 ORTHO05D007666 8.9e-69 263.8 180 77.8
MELO3C019508.2 Cucumis melo HOM05D006253 ORTHO05D007666 1.2e-68 263.5 172 78.5
CANSAT25G0326 Cannabis sativa HOM05D006253 ORTHO05D007666 1.5e-68 263.1 172 79.7
arahy.Tifrunner.gnm1.ann1.AJN977 Arachis hypogaea HOM05D006253 ORTHO05D007666 2.0e-68 262.7 172 78.5
Ca_15796_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 2.6e-68 262.3 172 80.8
Ca_30406_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 2.6e-68 262.3 172 80.8
Sed0027718 Sechium edule HOM05D006253 ORTHO05D007666 2.6e-68 262.3 172 77.9
TWI79G0152 Tripterygium wilfordii HOM05D006253 ORTHO05D007666 4.4e-68 261.5 173 79.8
PGR142G1116 Punica granatum HOM05D006253 ORTHO05D007666 5.8e-68 261.2 173 79.2
Rhsim05G0084000 Rhododendron simsii HOM05D006253 ORTHO05D007666 5.8e-68 261.2 181 77.3
CANSAT35G0887 Cannabis sativa HOM05D006253 ORTHO05D007666 1.3e-67 260.0 172 79.1
CsaV3_3G018580 Cucumis sativus L. HOM05D006253 ORTHO05D007666 1.3e-67 260.0 172 76.7
TPR.G19178 Trifolium pratense HOM05D006253 ORTHO05D007666 1.3e-67 260.0 164 81.7
Eucgr.I01155 Eucalyptus grandis HOM05D006253 ORTHO05D007666 1.7e-67 259.6 173 80.3
TPR.G19494 Trifolium pratense HOM05D006253 ORTHO05D007666 1.7e-67 259.6 163 82.8
arahy.Tifrunner.gnm1.ann1.5N1458 Arachis hypogaea HOM05D006253 ORTHO05D007666 3.8e-67 258.5 193 72.0
HanXRQChr16g0501301 Helianthus annuus HOM05D006253 ORTHO05D007666 4.9e-67 258.1 172 77.3
CAN.G1041.15 Capsicum annuum HOM05D006253 ORTHO05D007666 8.4e-67 257.3 172 78.5
SGA_v2.0_scaffold22G09667 Striga asiatica HOM05D006253 ORTHO05D007666 1.1e-66 256.9 172 77.3
Sopen01g050480 Solanum pennellii HOM05D006253 ORTHO05D007666 1.4e-66 256.5 172 77.9
PGSC0003DMG400025894 Solanum tuberosum HOM05D006253 ORTHO05D007666 1.9e-66 256.1 172 77.9
ECA234G4670 Erigeron canadensis HOM05D006253 ORTHO05D007666 2.4e-66 255.8 172 75.6
Ca_01013_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 3.2e-66 255.4 167 79.0
MSTRG.27724 Avicennia marina HOM05D006253 ORTHO05D007666 2.7e-65 252.3 172 76.7
THA.LOC104807358 Tarenaya hassleriana HOM05D006253 ORTHO05D007666 3.5e-65 251.9 173 76.3
EL10Ac5g11497 Beta vulgaris HOM05D006253 ORTHO05D007666 4.6e-65 251.5 172 75.0
Lsat_1_v5_gn_5_112681 Lactuca sativa HOM05D006253 ORTHO05D007666 6.0e-65 251.1 169 75.1
PSO782G1871 Papaver somniferum HOM05D006253 ORTHO05D007666 7.8e-65 250.8 167 79.0
Oeu010588.1 Olea europaea HOM05D006253 ORTHO05D007666 1.3e-64 250.0 172 76.2
Duzib052G0633 Durio zibethinus HOM05D006253 ORTHO05D007666 1.1e-63 246.9 144 87.5
HPP92_001047 Vanilla planifolia HOM05D006253 ORTHO05D007666 1.5e-63 246.5 172 75.6
arahy.Tifrunner.gnm1.ann1.1E2X9I Arachis hypogaea HOM05D006253 ORTHO05D007666 3.3e-63 245.4 150 82.7
Zm00001eb124670 Zea mays HOM05D006253 ORTHO05D007666 3.3e-63 245.4 173 75.1
Medtr8g099835 Medicago truncatula HOM05D006253 ORTHO05D007666 8.1e-62 240.7 149 83.9
Thhalv10026394m.g Eutrema salsugineum HOM05D006253 ORTHO05D007666 1.1e-61 240.4 173 74.6
AT4G34412 Arabidopsis thaliana HOM05D006253 ORTHO05D007666 1.8e-61 239.6 173 75.1
Sp7g32200 Schrenkiella parvula HOM05D006253 ORTHO05D007666 3.1e-61 238.8 173 74.6
CARHR242350 Cardamine hirsuta HOM05D006253 ORTHO05D007666 1.5e-60 236.5 173 73.4
AL7G16840 Arabidopsis lyrata HOM05D006253 ORTHO05D007666 2.6e-60 235.7 173 74.0
Carub.0007s0590 Capsella rubella HOM05D006253 ORTHO05D007666 2.6e-60 235.7 173 73.4
MBI02_g02992_MAGBIO Magnolia biondii HOM05D006253 ORTHO05D007666 4.4e-60 235.0 144 85.4
Os01g0142200 Oryza sativa ssp. japonica HOM05D006253 ORTHO05D007666 4.4e-60 235.0 173 72.8
BcaNung06978 Brassica carinata HOM05D006253 ORTHO05D007666 2.9e-59 232.3 173 72.8
A01p04020 Brassica napus HOM05D006253 ORTHO05D007666 2.9e-59 232.3 173 73.4
Glyma.06G172100 Glycine max HOM05D006253 ORTHO05D007666 3.8e-59 231.9 144 82.6
BraA03t15367Z Brassica rapa HOM05D006253 ORTHO05D007666 8.4e-59 230.7 173 72.8
Atru.chr5.2705 Acer truncatum HOM05D006253 ORTHO05D007666 1.1e-58 230.3 174 74.7
C07p60590 Brassica napus HOM05D006253 ORTHO05D007666 1.1e-58 230.3 173 72.3
Psat5g098280 Pisum sativum HOM05D006253 ORTHO05D007666 1.9e-58 229.6 144 81.2
Aa31LG2G16330 Aethionema arabicum HOM05D006253 ORTHO05D007666 7.1e-58 227.6 173 71.7
HanXRQChr10g0319791 Helianthus annuus HOM05D006253 ORTHO05D007666 6.0e-57 224.6 150 78.0
PSO478G4849 Papaver somniferum HOM05D006253 ORTHO05D007666 6.0e-57 224.6 144 81.9
Solyc01g108260.4 Solanum lycopersicum HOM05D006253 ORTHO05D007666 3.0e-56 222.2 149 77.9
CSS0003209 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 4.3e-55 218.4 142 81.7
Sed0021593 Sechium edule HOM05D006253 ORTHO05D007666 7.3e-55 217.6 172 66.9
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 2.8e-54 215.7 143 79.0
AagrBONN_evm.TU.Sc2ySwM_344.4457 Anthoceros agrestis HOM05D006253 ORTHO05D007666 5.3e-53 211.5 165 63.0
FAN20G2826 Fragaria x ananassa HOM05D006253 ORTHO05D007666 9.0e-53 210.7 172 66.9
DCAR_007862 Daucus carota HOM05D006253 ORTHO05D007666 1.2e-52 210.3 144 75.7
Mapoly0083s0082 Marchantia polymorpha HOM05D006253 ORTHO05D007666 8.4e-51 204.1 172 60.5
Hund00335 Selenicereus undatus HOM05D006253 ORTHO05D007666 8.4e-51 204.1 172 66.9
BolC7t46489H Brassica oleracea HOM05D003825 ORTHO05D004491 1.9e-50 203.0 150 72.0
SMO351G0094 Selaginella moellendorffii HOM05D006253 ORTHO05D007666 1.2e-49 200.3 165 64.2
Pp3c22_3990 Physcomitrium patens HOM05D006253 ORTHO05D007666 3.0e-48 195.7 175 59.4
FAN15G3440 Fragaria x ananassa HOM05D006253 ORTHO05D007666 8.7e-48 194.1 172 64.0
CBR_g38557 Chara braunii HOM05D006253 ORTHO05D007666 2.9e-43 179.1 165 58.2
AUR62029937 Chenopodium quinoa HOM05D006253 ORTHO05D007666 1.4e-42 176.8 127 72.4
AUR62033746 Chenopodium quinoa HOM05D006253 ORTHO05D007666 4.6e-41 171.8 144 66.7
Phvul.002G266500 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 3.9e-40 168.7 111 75.7
SEGI_00233 Sequoiadendron giganteum HOM05D006253 ORTHO05D007666 4.3e-39 165.2 121 71.1
CSS0033941 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 4.5e-36 155.2 139 68.3
Medtr2g105210 Medicago truncatula HOM05D006253 ORTHO05D007666 2.2e-35 152.9 123 68.3
BolC1t00422H Brassica oleracea HOM05D006253 ORTHO05D007666 1.4e-34 150.2 113 72.6
MD10G1094500 Malus domestica HOM05D006253 ORTHO05D007666 1.3e-32 143.7 101 72.3
vmacro19500 Vaccinium macrocarpon HOM05D006253 ORTHO05D007666 4.3e-31 138.7 164 54.9
Cc02_g18770 Coffea canephora HOM05D006253 ORTHO05D007666 3.7e-30 135.6 89 77.5
Prupe.4G258000 Prunus persica HOM05D006253 ORTHO05D007666 4.8e-30 135.2 99 71.7
C01p04340 Brassica napus HOM05D006253 ORTHO05D007666 1.4e-29 133.7 99 72.7
Prupe.6G016400 Prunus persica HOM05D006253 ORTHO05D007666 3.1e-29 132.5 128 57.8
vmacro06019 Vaccinium macrocarpon HOM05D006253 ORTHO05D007666 3.4e-28 129.0 95 74.7
MCO10G211 Micromonas commoda HOM05D006253 ORTHO05D007666 1.7e-27 126.7 160 43.1
Ah.10g034240 Amaranthus hybridus HOM05D006253 ORTHO05D007666 1.9e-26 123.2 86 72.1
A03p62890 Brassica napus HOM05D000211 ORTHO05D007666 2.7e-25 119.4 104 64.4
Gorai.005G238200 Gossypium raimondii HOM05D006253 ORTHO05D007666 3.6e-25 119.0 107 61.7
SalBow3G2580 Salvia bowleyana HOM05D006253 ORTHO05D007666 4.6e-25 118.6 86 72.1
Cre01.g030950 Chlamydomonas reinhardtii HOM05D006253 ORTHO05D007666 1.0e-24 117.5 165 39.4
PRCOL_00001305 Prasinoderma coloniale HOM05D006253 ORTHO05D007666 5.7e-23 111.7 177 41.8
Sabra09G0078100 Salix brachista HOM05D006253 ORTHO05D007666 9.7e-23 110.9 86 73.3
Hma1.2p1_0804F.1_g221060 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 5.3e-21 105.1 71 77.5
Gohir.D02G210201 Gossypium hirsutum HOM05D006253 ORTHO05D007666 3.8e-19 99.0 107 55.1
ClCG05G009990 Citrullus lanatus HOM05D006253 ORTHO05D007666 5.5e-18 95.1 115 51.3
Hma1.2p1_0674F.1_g201500 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 1.4e-16 90.5 58 79.3
Migut.N01188 Erythranthe guttata HOM05D006253 ORTHO05D007666 2.2e-14 83.2 59 69.5
Aqoxy5G01240 Aquilegia oxysepala HOM05D006253 ORTHO05D007666 5.3e-13 78.6 57 66.7
Prupe.4G259300 Prunus persica HOM05D006253 ORTHO05D007666 5.3e-13 78.6 86 52.3
Prupe.2G172700 Prunus persica HOM05D006253 ORTHO05D007666 4.5e-12 75.5 83 54.2
SEGI_00525 Sequoiadendron giganteum HOM05D006253 ORTHO05D007666 4.5e-12 75.5 58 65.5
Oeu025576.2 Olea europaea HOM05D006253 ORTHO05D007666 1.0e-11 74.3 63 65.1
Migut.N01189 Erythranthe guttata HOM05D006253 ORTHO05D007666 2.7e-09 66.2 47 72.3
BolC1t00423H Brassica oleracea HOM05D000123 ORTHO05D009958 3.7e-06 55.8 57 54.4


User provided reference genes

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