Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30307 Nelumbo nucifera HOM05D000123 ORTHO05D000064 3.8e-42 174.9 119 100.0
Nn1g04850 Nelumbo nucifera HOM05D000123 ORTHO05D000064 2.1e-24 115.9 80 80.0
TAR625G1290 Trochodendron aralioides HOM05D000123 ORTHO05D000064 8.2e-21 104.0 81 72.8
Manes.12G101000 Manihot esculenta HOM05D000123 ORTHO05D000064 1.8e-20 102.8 81 69.1
QL06p041415 Quercus lobata HOM05D000123 ORTHO05D000064 3.1e-20 102.1 80 68.8
TAR381G0440 Trochodendron aralioides HOM05D003465 ORTHO05D004034 3.1e-20 102.1 89 66.3
Thecc.01G055500 Theobroma cacao HOM05D000123 ORTHO05D000064 9.0e-20 100.5 81 66.7
CAN.G660.5 Capsicum annuum HOM05D000123 ORTHO05D000064 1.2e-19 100.1 81 66.7
Aqoxy6G01315 Aquilegia oxysepala HOM05D000123 ORTHO05D000064 2.6e-19 99.0 80 65.0
Manes.13G124500 Manihot esculenta HOM05D000123 ORTHO05D000064 2.6e-19 99.0 81 66.7
GSVIVG01022134001 Vitis vinifera HOM05D000123 ORTHO05D000064 2.6e-19 99.0 81 69.1
FvH4_1g16030 Fragaria vesca HOM05D000123 ORTHO05D000064 5.9e-19 97.8 81 67.9
CANSAT01G1601 Cannabis sativa HOM05D000123 ORTHO05D000064 1.0e-18 97.1 80 66.2
Cpa.g.sc55.150 Carica papaya HOM05D000123 ORTHO05D000064 1.3e-18 96.7 81 66.7
PGSC0003DMG401004023 Solanum tuberosum HOM05D000123 ORTHO05D000064 1.3e-18 96.7 81 66.7
FAN19G1965 Fragaria x ananassa HOM05D000123 ORTHO05D000064 1.7e-18 96.3 82 65.9
Solyc02g090820.3 Solanum lycopersicum HOM05D000123 ORTHO05D000064 2.2e-18 95.9 81 66.7
Haze_15404 Corylus avellana HOM05D000123 ORTHO05D000064 2.9e-18 95.5 83 67.5
Nitab4.5_0002016g0030 Nicotiana tabacum HOM05D000123 ORTHO05D000064 5.0e-18 94.7 81 64.2
Duzib147G0961 Durio zibethinus HOM05D000123 ORTHO05D000064 6.5e-18 94.4 82 65.9
Duzib264G0066 Durio zibethinus HOM05D000123 ORTHO05D000064 8.5e-18 94.0 81 65.4
FAN23G1250 Fragaria x ananassa HOM05D000123 ORTHO05D000064 1.1e-17 93.6 81 64.2
Nitab4.5_0009939g0010 Nicotiana tabacum HOM05D000123 ORTHO05D000064 1.1e-17 93.6 90 57.8
CiPaw.01G018400 Carya illinoinensis HOM05D000123 ORTHO05D000064 1.4e-17 93.2 80 66.2
Sopen02g035450 Solanum pennellii HOM05D000123 ORTHO05D000064 1.4e-17 93.2 81 65.4
SGA_v2.0_scaffold15G07298 Striga asiatica HOM05D000123 ORTHO05D000064 1.4e-17 93.2 82 68.3
Dinv39851 Davidia involucrata HOM05D000123 ORTHO05D000064 1.9e-17 92.8 80 65.0
FAN28G2209 Fragaria x ananassa HOM05D000123 ORTHO05D000064 1.9e-17 92.8 81 66.7
Oeu050784.1 Olea europaea HOM05D000123 ORTHO05D000064 1.9e-17 92.8 77 70.1
RcHm_v2.0_Chr2g0105601 Rosa chinensis HOM05D000123 ORTHO05D000064 3.2e-17 92.0 81 65.4
Cc07_g05960 Coffea canephora HOM05D007198 ORTHO05D008969 7.2e-17 90.9 81 61.7
FAN26G3381 Fragaria x ananassa HOM05D000123 ORTHO05D000064 7.2e-17 90.9 81 61.7
TWI73G0689 Tripterygium wilfordii HOM05D000123 ORTHO05D000064 7.2e-17 90.9 79 65.8
CSS0020980 Camellia sinensis var. sinensis HOM05D000123 ORTHO05D000064 1.6e-16 89.7 78 62.8
Prupe.7G133600 Prunus persica HOM05D000123 ORTHO05D000064 1.6e-16 89.7 81 65.4
Gohir.D03G022800 Gossypium hirsutum HOM05D000123 ORTHO05D000064 2.1e-16 89.4 88 60.2
Gorai.003G023500 Gossypium raimondii HOM05D000123 ORTHO05D000064 2.1e-16 89.4 88 60.2
Gohir.A02G158000 Gossypium hirsutum HOM05D000123 ORTHO05D000064 2.7e-16 89.0 88 60.2
Duzib187G0966 Durio zibethinus HOM05D000123 ORTHO05D000064 4.6e-16 88.2 81 60.5
Hma1.2p1_0200F.1_g085820 Hydrangea macrophylla HOM05D000123 ORTHO05D000064 4.6e-16 88.2 81 63.0
Hma1.2p1_0200F.1_g085830 Hydrangea macrophylla HOM05D000123 ORTHO05D000064 4.6e-16 88.2 81 63.0
Hma1.2p1_2839F.1_g329292 Hydrangea macrophylla HOM05D000123 ORTHO05D000064 4.6e-16 88.2 81 63.0
Hma1.2p1_2839F.1_g329293 Hydrangea macrophylla HOM05D000123 ORTHO05D000064 4.6e-16 88.2 81 63.0
ClCG01G016810 Citrullus lanatus HOM05D000123 ORTHO05D000064 6.1e-16 87.8 83 59.0
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 6.1e-16 87.8 77 63.6
Atru.chr3.331 Acer truncatum HOM05D000123 ORTHO05D000064 7.9e-16 87.4 81 60.5
MSTRG.23748 Avicennia marina HOM05D000123 ORTHO05D000064 1.0e-15 87.0 80 66.2
MSTRG.2885 Avicennia marina HOM05D000123 ORTHO05D000064 1.0e-15 87.0 77 64.9
Cfa004021 Carpinus fangiana HOM05D000123 ORTHO05D000064 1.4e-15 86.7 87 58.6
Potri.007G043800 Populus trichocarpa HOM05D000123 ORTHO05D000064 1.8e-15 86.3 77 64.9
Oeu018956.1 Olea europaea HOM05D000123 ORTHO05D000064 2.3e-15 85.9 77 64.9
Gohir.D11G049900 Gossypium hirsutum HOM05D000123 ORTHO05D000064 5.1e-15 84.7 81 59.3
Gorai.007G053900 Gossypium raimondii HOM05D000123 ORTHO05D000064 6.7e-15 84.3 80 61.2
Peaxi162Scf00450g00422 Petunia axillaris HOM05D000123 ORTHO05D000064 2.0e-14 82.8 84 60.7
SGA_v2.0_scaffold204G41572 Striga asiatica HOM05D000123 ORTHO05D000064 2.0e-14 82.8 84 58.3
TWI53G0695 Tripterygium wilfordii HOM05D000123 ORTHO05D000064 2.0e-14 82.8 78 61.5
MD15G1283700 Malus domestica HOM05D000123 ORTHO05D000064 2.5e-14 82.4 80 57.5
TAR628G1435 Trochodendron aralioides HOM05D000123 ORTHO05D000064 2.5e-14 82.4 82 62.2
CiPaw.02G008400 Carya illinoinensis HOM05D000123 ORTHO05D000064 4.3e-14 81.6 81 58.0
Gorai.011G105700 Gossypium raimondii HOM05D000123 ORTHO05D000064 4.3e-14 81.6 81 55.6
MD02G1171800 Malus domestica HOM05D000123 ORTHO05D000064 4.3e-14 81.6 81 60.5
Gohir.A10G092000 Gossypium hirsutum HOM05D000123 ORTHO05D000064 7.4e-14 80.9 81 55.6
ECA232G3360 Erigeron canadensis HOM05D000123 ORTHO05D000064 2.2e-13 79.3 77 58.4
Gohir.A11G046500 Gossypium hirsutum HOM05D000123 ORTHO05D000064 2.2e-13 79.3 81 59.3
Gohir.D10G096400 Gossypium hirsutum HOM05D000123 ORTHO05D000064 2.2e-13 79.3 81 54.3
Ciclev10026058m.g Citrus clementina HOM05D000123 ORTHO05D000064 4.8e-13 78.2 71 63.4
CsaV3_6G043240 Cucumis sativus L. HOM05D000123 ORTHO05D000064 6.3e-13 77.8 83 51.8
Lsat_1_v5_gn_4_165921 Lactuca sativa HOM05D000123 ORTHO05D000064 6.3e-13 77.8 77 57.1
MELO3C007560.2 Cucumis melo HOM05D000123 ORTHO05D000064 8.2e-13 77.4 83 51.8
Rhsim10G0118300 Rhododendron simsii HOM05D000123 ORTHO05D000064 1.1e-12 77.0 81 53.1
PGR004G0968 Punica granatum HOM05D000123 ORTHO05D000064 1.8e-12 76.3 75 54.7
Sed0025502 Sechium edule HOM05D000123 ORTHO05D000064 1.8e-12 76.3 82 52.4
MBI03_g13464_MAGBIO Magnolia biondii HOM05D000123 ORTHO05D000064 6.9e-12 74.3 66 60.6
HanXRQChr15g0490471 Helianthus annuus HOM05D000123 ORTHO05D000064 1.2e-11 73.6 76 56.6
Lsat_1_v5_gn_3_90920 Lactuca sativa HOM05D000123 ORTHO05D000064 1.2e-11 73.6 75 56.0
MBI06_g02559_MAGBIO Magnolia biondii HOM05D000123 ORTHO05D000064 2.0e-11 72.8 87 51.7
Hund16325 Selenicereus undatus HOM05D000123 ORTHO05D000064 2.0e-11 72.8 79 51.9
Sc07g0000020 Simmondsia chinensis HOM05D000123 ORTHO05D000064 2.6e-11 72.4 79 53.2
Ah.02g124260 Amaranthus hybridus HOM05D000123 ORTHO05D000064 4.5e-11 71.6 83 49.4
ATR0009G004 Amborella trichopoda HOM05D000123 ORTHO05D000064 4.5e-11 71.6 79 59.5
THA.LOC104807583 Tarenaya hassleriana HOM05D000123 ORTHO05D000064 5.9e-11 71.2 81 54.3
vmacro17953 Vaccinium macrocarpon HOM05D000123 ORTHO05D000064 5.9e-11 71.2 80 55.0
Hma1.2p1_0461F.1_g157820 Hydrangea macrophylla HOM05D000123 ORTHO05D000064 7.7e-11 70.9 81 55.6
Eucgr.I00929 Eucalyptus grandis HOM05D000123 ORTHO05D000064 1.3e-10 70.1 91 49.5
PSO170G4586 Papaver somniferum HOM05D000123 ORTHO05D000064 1.3e-10 70.1 78 55.1
AUR62003880 Chenopodium quinoa HOM05D000123 ORTHO05D000064 1.7e-10 69.7 79 50.6
THA.LOC104821256 Tarenaya hassleriana HOM05D000123 ORTHO05D000064 1.7e-10 69.7 81 50.6
TWI09G0622 Tripterygium wilfordii HOM05D000123 ORTHO05D000064 1.7e-10 69.7 79 54.4
Lalb_Chr05g0213281 Lupinus albus HOM05D000123 ORTHO05D000064 3.8e-10 68.6 81 53.1
Ca_24772_v3 Cicer arietinum L. HOM05D000123 ORTHO05D000064 5.0e-10 68.2 70 55.7
PSO210G4471 Papaver somniferum HOM05D000123 ORTHO05D000064 6.5e-10 67.8 60 60.0
TPR.G10245 Trifolium pratense HOM05D000123 ORTHO05D000064 6.5e-10 67.8 87 47.1
Rhsim08G0100600 Rhododendron simsii HOM05D000123 ORTHO05D000064 8.5e-10 67.4 81 53.1
HanXRQChr09g0259101 Helianthus annuus HOM05D000123 ORTHO05D000064 1.1e-09 67.0 76 52.6
AUR62001930 Chenopodium quinoa HOM05D000123 ORTHO05D000064 1.9e-09 66.2 79 46.8
COL.COLO4_11409 Corchorus olitorius HOM05D000123 ORTHO05D000064 1.9e-09 66.2 67 58.2
PGR102G2890 Punica granatum HOM05D000123 ORTHO05D000064 1.9e-09 66.2 62 50.0
THA.LOC104819233 Tarenaya hassleriana HOM05D000123 ORTHO05D000064 1.9e-09 66.2 85 49.4
TPR.G141 Trifolium pratense HOM05D000123 ORTHO05D000064 4.2e-09 65.1 56 57.1
arahy.Tifrunner.gnm1.ann1.W19Z82 Arachis hypogaea HOM05D000123 ORTHO05D000064 5.5e-09 64.7 53 60.4
Phvul.002G019100 Phaseolus vulgaris HOM05D000123 ORTHO05D000064 5.5e-09 64.7 71 52.1
Glyma.11G056200 Glycine max HOM05D000123 ORTHO05D000064 7.2e-09 64.3 82 52.4
Medtr5g017470 Medicago truncatula HOM05D000123 ORTHO05D000064 7.2e-09 64.3 68 55.9
EL10Ac6g15747 Beta vulgaris HOM05D000123 ORTHO05D000064 9.4e-09 63.9 78 47.4
Glyma.01G185800 Glycine max HOM05D000123 ORTHO05D000064 9.4e-09 63.9 69 53.6
arahy.Tifrunner.gnm1.ann1.8U41WB Arachis hypogaea HOM05D000123 ORTHO05D000064 1.6e-08 63.2 53 58.5
Glyma.05G095900 Glycine max HOM05D000123 ORTHO05D000064 1.6e-08 63.2 87 47.1
Glyma.17G174900 Glycine max HOM05D000123 ORTHO05D000064 1.6e-08 63.2 86 48.8
Phvul.003G244000 Phaseolus vulgaris HOM05D000123 ORTHO05D000064 1.6e-08 63.2 81 43.2
Lj2g0009902 Lotus japonicus HOM05D000123 ORTHO05D000064 2.1e-08 62.8 59 54.2
Lalb_Chr16g0378521 Lupinus albus HOM05D000123 ORTHO05D000064 2.1e-08 62.8 81 46.9
VMungo0251G1782 Vigna mungo HOM05D000123 ORTHO05D000064 2.1e-08 62.8 81 49.4
Thhalv10025906m.g Eutrema salsugineum HOM05D000123 ORTHO05D000064 3.6e-08 62.0 79 50.6
Psat2g167080 Pisum sativum HOM05D000123 ORTHO05D000064 3.6e-08 62.0 75 50.7
BolC1t00194H Brassica oleracea HOM05D000123 ORTHO05D000064 6.1e-08 61.2 79 50.6
Ca_19499_v3 Cicer arietinum L. HOM05D000123 ORTHO05D000064 6.1e-08 61.2 82 45.1
HanXRQChr12g0378811 Helianthus annuus HOM05D000123 ORTHO05D000064 6.1e-08 61.2 77 46.8
Lj4g0004440 Lotus japonicus HOM05D000123 ORTHO05D000064 7.9e-08 60.8 89 46.1
BcaNung02519 Brassica carinata HOM05D000123 ORTHO05D000064 1.0e-07 60.5 79 49.4
CDE04G1834 Ceratophyllum demersum HOM05D000123 ORTHO05D000064 1.0e-07 60.5 80 50.0
Aa31LG6G13980 Aethionema arabicum HOM05D000123 ORTHO05D000064 1.4e-07 60.1 77 49.4
A01p01860 Brassica napus HOM05D000123 ORTHO05D000064 1.4e-07 60.1 79 49.4
BraA01t00175Z Brassica rapa HOM05D000123 ORTHO05D000064 1.4e-07 60.1 79 49.4
Sp7g34770 Schrenkiella parvula HOM05D000123 ORTHO05D000064 1.4e-07 60.1 79 49.4
Lalb_Chr05g0226591 Lupinus albus HOM05D000123 ORTHO05D000064 1.8e-07 59.7 91 41.8
C01p02000 Brassica napus HOM05D000123 ORTHO05D000064 3.0e-07 58.9 79 50.6
AL7G13760 Arabidopsis lyrata HOM05D000123 ORTHO05D000064 6.7e-07 57.8 80 50.0
CARHR245510 Cardamine hirsuta HOM05D000123 ORTHO05D000064 8.8e-07 57.4 71 49.3
A03p64830 Brassica napus HOM05D000123 ORTHO05D000064 4.4e-06 55.1 75 46.7
BraA03t15546Z Brassica rapa HOM05D000123 ORTHO05D000064 4.4e-06 55.1 75 46.7
ECA246G2387 Erigeron canadensis HOM05D000123 ORTHO05D000064 5.7e-06 54.7 77 49.4
BolC7t46635H Brassica oleracea HOM05D000123 ORTHO05D000064 9.7e-06 53.9 76 46.1


User provided reference genes

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