Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30300 Nelumbo nucifera HOM05D005490 ORTHO05D006606 1.3e-251 872.8 531 100.0
Dinv29986 Davidia involucrata HOM05D005490 ORTHO05D006606 1.0e-198 697.2 507 79.1
GSVIVG01022130001 Vitis vinifera HOM05D005490 ORTHO05D006606 3.0e-195 685.6 504 80.0
CiPaw.01G018200 Carya illinoinensis HOM05D005490 ORTHO05D006606 4.4e-194 681.8 489 78.7
QL06p041379 Quercus lobata HOM05D005490 ORTHO05D006606 2.2e-193 679.5 520 76.3
Lj7A69T47 Lonicera japonica HOM05D005490 ORTHO05D006606 4.8e-193 678.3 538 74.2
Duzib187G0068 Durio zibethinus HOM05D005490 ORTHO05D006606 4.1e-192 675.2 517 78.7
Ciclev10025320m.g Citrus clementina HOM05D005490 ORTHO05D006606 2.3e-190 669.5 502 77.9
Thecc.01G056300 Theobroma cacao HOM05D005490 ORTHO05D006606 5.0e-190 668.3 487 80.9
TWI09G1398 Tripterygium wilfordii HOM05D005490 ORTHO05D006606 6.6e-190 667.9 486 79.6
Actinidia03792 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.1e-189 667.2 500 77.0
Cc07_g05990 Coffea canephora HOM05D005490 ORTHO05D006606 1.9e-189 666.4 485 80.0
Manes.12G106800 Manihot esculenta HOM05D005490 ORTHO05D006606 2.3e-187 659.4 487 78.9
Cfa004023 Carpinus fangiana HOM05D005490 ORTHO05D006606 4.9e-185 651.7 486 78.2
Gohir.D11G199100 Gossypium hirsutum HOM05D005490 ORTHO05D006606 4.1e-184 648.7 486 76.5
Glyma.01G186000 Glycine max HOM05D005490 ORTHO05D006606 5.9e-183 644.8 508 75.8
RcHm_v2.0_Chr2g0105671 Rosa chinensis HOM05D005490 ORTHO05D006606 2.3e-182 642.9 500 73.8
Potri.007G044100 Populus trichocarpa HOM05D005490 ORTHO05D006606 3.8e-182 642.1 490 75.3
Prupe.7G133300 Prunus persica HOM05D005490 ORTHO05D006606 1.9e-181 639.8 484 75.4
Oeu031525.2 Olea europaea HOM05D005490 ORTHO05D006606 9.5e-181 637.5 501 76.2
Nitab4.5_0002016g0110 Nicotiana tabacum HOM05D005490 ORTHO05D006606 2.1e-180 636.3 493 74.0
Gorai.007G213300 Gossypium raimondii HOM05D005490 ORTHO05D006606 2.8e-180 636.0 503 75.1
Hma1.2p1_0461F.1_g157810 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 3.6e-180 635.6 500 75.6
PSO170G3823 Papaver somniferum HOM05D005490 ORTHO05D006606 1.8e-179 633.3 448 79.7
Gohir.A11G192400 Gossypium hirsutum HOM05D005490 ORTHO05D006606 2.3e-179 632.9 484 76.9
PSO210G6251 Papaver somniferum HOM05D005490 ORTHO05D006606 3.1e-179 632.5 448 79.9
Phvul.002G018900 Phaseolus vulgaris HOM05D005490 ORTHO05D006606 3.1e-179 632.5 511 76.3
TPR.G30705 Trifolium pratense HOM05D005490 ORTHO05D006606 2.0e-178 629.8 504 76.4
Sc03g0001580 Simmondsia chinensis HOM05D005490 ORTHO05D006606 4.4e-178 628.6 486 78.0
VMungo1215G3252 Vigna mungo HOM05D005490 ORTHO05D006606 5.8e-178 628.2 508 75.0
Lj2g0003149 Lotus japonicus HOM05D005490 ORTHO05D006606 4.9e-177 625.2 489 74.2
DCAR_025733 Daucus carota HOM05D005490 ORTHO05D006606 6.4e-177 624.8 511 70.5
FAN19G0012 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.4e-176 623.6 498 73.7
FAN28G1226 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.9e-176 623.2 516 71.5
arahy.Tifrunner.gnm1.ann1.JF37M9 Arachis hypogaea HOM05D005490 ORTHO05D006606 2.7e-175 619.4 486 76.5
Psat2g166360 Pisum sativum HOM05D005490 ORTHO05D006606 6.0e-175 618.2 502 73.7
Lalb_Chr05g0213291 Lupinus albus HOM05D005490 ORTHO05D006606 5.0e-174 615.1 489 73.8
CANSAT01G1717 Cannabis sativa HOM05D005490 ORTHO05D006606 6.6e-174 614.8 452 76.8
Glyma.11G056000 Glycine max HOM05D005490 ORTHO05D006606 4.3e-173 612.1 510 74.5
COL.COLO4_11415 Corchorus olitorius HOM05D005490 ORTHO05D006606 1.6e-172 610.1 447 78.3
Sp7g34780 Schrenkiella parvula HOM05D005490 ORTHO05D006606 8.0e-172 607.8 502 71.5
Sed0007368 Sechium edule HOM05D005490 ORTHO05D006606 8.9e-171 604.4 492 73.4
Medtr5g017430 Medicago truncatula HOM05D005490 ORTHO05D006606 3.4e-170 602.4 506 72.9
PGSC0003DMG400004042 Solanum tuberosum HOM05D005490 ORTHO05D006606 4.4e-170 602.1 449 72.8
Oeu062437.1 Olea europaea HOM05D005490 ORTHO05D006606 5.8e-170 601.7 501 71.7
EL10Ac6g15745 Beta vulgaris HOM05D005490 ORTHO05D006606 2.9e-169 599.4 520 71.5
Lsat_1_v5_gn_2_84101 Lactuca sativa HOM05D005490 ORTHO05D006606 2.9e-169 599.4 509 71.1
Solyc02g090850.3 Solanum lycopersicum HOM05D005490 ORTHO05D006606 3.7e-169 599.0 449 72.6
CSS0049924 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 4.9e-169 598.6 496 72.6
CsaV3_2G016660 Cucumis sativus L. HOM05D005490 ORTHO05D006606 4.9e-169 598.6 451 76.9
Gohir.A02G157300 Gossypium hirsutum HOM05D005490 ORTHO05D006606 4.9e-169 598.6 489 74.8
HanXRQChr14g0442791 Helianthus annuus HOM05D005490 ORTHO05D006606 3.2e-168 595.9 504 70.4
Sabra07G0038800 Salix brachista HOM05D005490 ORTHO05D006606 5.4e-168 595.1 501 69.3
Migut.H00433 Erythranthe guttata HOM05D005490 ORTHO05D006606 9.2e-168 594.3 496 72.4
Carub.0007s0317 Capsella rubella HOM05D005490 ORTHO05D006606 6.0e-167 591.7 485 71.3
arahy.Tifrunner.gnm1.ann1.5GG3L5 Arachis hypogaea HOM05D005490 ORTHO05D006606 7.8e-167 591.3 524 70.6
CAN.G660.7 Capsicum annuum HOM05D005490 ORTHO05D006606 3.0e-166 589.3 449 73.5
Ca_24770_v3 Cicer arietinum L. HOM05D005490 ORTHO05D006606 2.5e-165 586.3 502 72.1
A01p01850 Brassica napus HOM05D005490 ORTHO05D006606 5.6e-165 585.1 485 70.1
BraA01t00174Z Brassica rapa HOM05D005490 ORTHO05D006606 5.6e-165 585.1 485 70.1
THA.LOC104804216 Tarenaya hassleriana HOM05D005490 ORTHO05D006606 5.6e-165 585.1 488 70.5
ClCG02G012530 Citrullus lanatus HOM05D005490 ORTHO05D006606 2.8e-164 582.8 503 69.0
Aa31LG6G13990 Aethionema arabicum HOM05D005490 ORTHO05D006606 4.7e-164 582.0 515 65.8
AT4G36980 Arabidopsis thaliana HOM05D005490 ORTHO05D006606 6.2e-164 581.6 502 68.3
Thhalv10025018m.g Eutrema salsugineum HOM05D005490 ORTHO05D006606 6.2e-164 581.6 489 71.0
Hund16323 Selenicereus undatus HOM05D005490 ORTHO05D006606 6.2e-164 581.6 480 73.5
CDE08G0045 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 1.4e-163 580.5 509 68.4
Gorai.003G025100 Gossypium raimondii HOM05D005490 ORTHO05D006606 5.8e-162 575.1 484 74.4
C01p01990 Brassica napus HOM05D005490 ORTHO05D006606 1.7e-161 573.5 485 68.0
ECA238G0711 Erigeron canadensis HOM05D005490 ORTHO05D006606 2.2e-161 573.2 503 70.4
ATR1102G026 Amborella trichopoda HOM05D005490 ORTHO05D006606 1.1e-160 570.9 502 69.1
AL7G13750 Arabidopsis lyrata HOM05D005490 ORTHO05D006606 2.1e-159 566.6 485 68.7
BolC1t00193H Brassica oleracea HOM05D005490 ORTHO05D006606 3.0e-158 562.8 496 66.3
TAR381G1106 Trochodendron aralioides HOM05D005490 ORTHO05D006606 5.1e-158 562.0 375 84.5
Aqoxy5G01229 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 8.6e-158 561.2 375 84.0
Gohir.D03G023600 Gossypium hirsutum HOM05D005490 ORTHO05D006606 1.6e-156 557.0 449 75.5
CARHR245520 Cardamine hirsuta HOM05D005490 ORTHO05D006606 2.8e-156 556.2 501 66.5
Os03g0395900 Oryza sativa ssp. japonica HOM05D005490 ORTHO05D006606 3.4e-154 549.3 449 71.3
SGA_v2.0_scaffold15G07303 Striga asiatica HOM05D005490 ORTHO05D006606 9.2e-152 541.2 450 72.4
HPP92_004114 Vanilla planifolia HOM05D005490 ORTHO05D006606 1.2e-151 540.8 486 67.7
BcaNung02520 Brassica carinata HOM05D005490 ORTHO05D006606 2.7e-151 539.7 450 68.9
CDE06G1923 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 3.0e-150 536.2 467 67.9
MD02G1172000 Malus domestica HOM05D005490 ORTHO05D006606 5.6e-149 531.9 375 77.9
AUR62001928 Chenopodium quinoa HOM05D005490 ORTHO05D006606 1.1e-147 527.7 529 61.6
Peaxi162Scf00450g00420 Petunia axillaris HOM05D005490 ORTHO05D006606 2.6e-146 523.1 498 61.4
Potri.005G138200 Populus trichocarpa HOM05D005490 ORTHO05D006606 3.0e-142 509.6 376 75.5
FAN26G0668 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.1e-139 501.1 389 74.3
FAN23G2111 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.1e-128 464.5 392 70.9
Sabra05G0112300 Salix brachista HOM05D005490 ORTHO05D006606 2.8e-124 449.9 530 56.0
AUR62003882 Chenopodium quinoa HOM05D005490 ORTHO05D006606 8.4e-121 438.3 477 58.3
Nitab4.5_0002440g0010 Nicotiana tabacum HOM05D005490 ORTHO05D006606 1.9e-120 437.2 505 54.1
Ah.03g145080 Amaranthus hybridus HOM05D005490 ORTHO05D006606 1.2e-114 417.9 383 69.2
Hma1.2p1_0461F.1_g157800 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 3.8e-113 412.9 370 71.4
Rhsim08G0100400 Rhododendron simsii HOM05D005490 ORTHO05D006606 5.0e-113 412.5 451 61.4
Mapoly0012s0107 Marchantia polymorpha HOM05D005490 ORTHO05D006606 1.9e-112 410.6 466 56.9
unitig_899.g14662 Utricularia gibba HOM05D005490 ORTHO05D006606 5.7e-109 399.1 379 67.0
Dinv39848 Davidia involucrata HOM05D005490 ORTHO05D006606 2.6e-106 390.2 290 77.9
Eucgr.I00926 Eucalyptus grandis HOM05D005490 ORTHO05D006606 2.9e-105 386.7 364 67.6
FvH4_1g16060 Fragaria vesca HOM05D005490 ORTHO05D006606 5.5e-104 382.5 343 69.7
vmacro17955 Vaccinium macrocarpon HOM05D005490 ORTHO05D006606 4.7e-103 379.4 391 66.8
Atru.chr3.327 Acer truncatum HOM05D005490 ORTHO05D006606 2.8e-100 370.2 308 72.7
MD15G1284300 Malus domestica HOM05D005490 ORTHO05D006606 3.7e-100 369.8 336 68.2
MELO3C020875.2 Cucumis melo HOM05D005490 ORTHO05D006606 8.8e-94 348.6 310 71.9
Pp3c7_5520 Physcomitrium patens HOM05D005490 ORTHO05D006606 2.6e-93 347.1 528 50.0
Pp3c11_20900 Physcomitrium patens HOM05D005490 ORTHO05D006606 1.6e-87 327.8 529 48.2
HPP92_004074 Vanilla planifolia HOM05D005490 ORTHO05D006606 5.2e-86 322.8 343 62.7
Haze_15401 Corylus avellana HOM05D005490 ORTHO05D006606 1.4e-75 288.1 252 71.4
Haze_15403 Corylus avellana HOM05D005490 ORTHO05D006606 7.0e-75 285.8 252 71.4
Sopen02g035470 Solanum pennellii HOM05D005490 ORTHO05D006606 7.0e-75 285.8 241 67.6
SEGI_41077 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 1.5e-72 278.1 377 57.0
Zm00001eb019290 Zea mays HOM05D005490 ORTHO05D006606 2.8e-71 273.9 287 60.3
Actinidia16483 Actinidia chinensis HOM05D005490 ORTHO05D006606 2.2e-68 264.2 318 61.0
SEGI_00791 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 1.6e-63 248.1 154 79.9
SMO356G0652 Selaginella moellendorffii HOM05D005490 ORTHO05D006606 9.8e-61 238.8 246 56.9
Actinidia36493 Actinidia chinensis HOM05D005490 ORTHO05D006606 9.2e-59 232.3 353 48.7
Atru.chr3.328 Acer truncatum HOM05D005490 ORTHO05D006606 1.3e-57 228.4 128 86.7
Cpa.g.sc55.148 Carica papaya HOM05D005490 ORTHO05D006606 1.7e-57 228.0 128 87.5
CBR_g38045 Chara braunii HOM05D005490 ORTHO05D000004 6.8e-54 216.1 489 42.9
MD15G1284200 Malus domestica HOM05D005490 ORTHO05D006606 2.6e-53 214.2 128 85.2
AagrBONN_evm.TU.Sc2ySwM_344.4468 Anthoceros agrestis HOM05D005490 ORTHO05D006606 2.1e-39 167.9 474 32.5
Actinidia16484 Actinidia chinensis HOM05D005490 ORTHO05D006606 2.4e-38 164.5 84 92.9
VMungo1309G0325 Vigna mungo HOM05D005490 ORTHO05D006606 3.9e-33 147.1 162 54.9
CSS0031445 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 2.1e-31 141.4 133 67.7
VMungo0720G1861 Vigna mungo HOM05D005490 ORTHO05D006606 4.4e-29 133.7 145 54.5
Aqoxy5G01228 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 3.2e-27 127.5 121 64.5
MD02G1172100 Malus domestica HOM05D005490 ORTHO05D006606 1.3e-25 122.1 128 60.2
SHI08459 Sapria himalayana HOM05D005490 ORTHO05D006606 1.5e-24 118.6 282 34.4
FAN22G1581 Fragaria x ananassa HOM05D005490 ORTHO05D006606 3.6e-23 114.0 72 77.8
CDE08G1038 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 5.3e-22 110.2 383 32.1
FAN17G2271 Fragaria x ananassa HOM05D005490 ORTHO05D006606 9.0e-22 109.4 66 81.8
TAR381G1012 Trochodendron aralioides HOM05D005490 ORTHO05D006606 4.2e-19 100.5 94 67.0
FAN17G1267 Fragaria x ananassa HOM05D005490 ORTHO05D006606 7.1e-19 99.8 64 81.2
VMungo0251G2361 Vigna mungo HOM05D007793 ORTHO05D010104 6.0e-18 96.7 87 58.6
VMungo1309G1585 Vigna mungo HOM05D005490 ORTHO05D006606 1.3e-17 95.5 88 61.4
Actinidia36494 Actinidia chinensis HOM05D005490 ORTHO05D006606 8.1e-15 86.3 75 68.0
Atru.chr10.1611 Acer truncatum HOM05D005490 ORTHO05D006606 1.0e-12 79.3 50 78.0
Cre12.g498350 Chlamydomonas reinhardtii HOM05D005490 ORTHO05D006606 1.2e-10 72.4 294 32.0
ECA233G0248 Erigeron canadensis HOM05D000047 ORTHO05D006606 1.8e-06 58.5 133 47.4


User provided reference genes

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