Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30274 Nelumbo nucifera HOM05D007567 ORTHO05D000126 1.4e-65 252.7 117 100.0
Atru.chr7.810 Acer truncatum HOM05D000003 ORTHO05D000126 1.2e-11 73.6 100 35.0
Atru.chr3.1908 Acer truncatum HOM05D000003 ORTHO05D000126 1.5e-11 73.2 100 35.0
Atru.chr6.490 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-11 73.2 100 35.0
Atru.chr11.971 Acer truncatum HOM05D000003 ORTHO05D000126 1.7e-10 69.7 101 32.7
Atru.chr4.127 Acer truncatum HOM05D000003 ORTHO05D000126 2.9e-10 68.9 90 34.4
Atru.chr4.156 Acer truncatum HOM05D000003 ORTHO05D000126 2.9e-10 68.9 115 30.4
Atru.chr4.3089 Acer truncatum HOM05D000003 ORTHO05D000126 4.9e-10 68.2 102 33.3
Atru.chr9.1190 Acer truncatum HOM05D000003 ORTHO05D000126 6.4e-10 67.8 102 33.3
Atru.chr5.2472 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-09 67.0 95 33.7
Atru.chr11.1735 Acer truncatum HOM05D000003 ORTHO05D000126 1.4e-09 66.6 101 30.7
Atru.chr13.1808 Acer truncatum HOM05D000003 ORTHO05D000004 2.4e-09 65.9 102 27.5
Atru.chr7.664 Acer truncatum HOM05D000003 ORTHO05D000004 2.4e-09 65.9 100 31.0
COL.COLO4_26770 Corchorus olitorius HOM05D007567 ORTHO05D000126 3.2e-09 65.5 107 29.0
Atru.chr4.689 Acer truncatum HOM05D000003 ORTHO05D000126 4.1e-09 65.1 99 30.3
Atru.chr6.888 Acer truncatum HOM05D000003 ORTHO05D000004 4.1e-09 65.1 97 28.9
Haze_24509 Corylus avellana HOM05D000003 ORTHO05D000126 5.4e-09 64.7 104 34.6
Atru.chr3.2934 Acer truncatum HOM05D000003 ORTHO05D000006 1.2e-08 63.5 100 32.0
COL.COLO4_24362 Corchorus olitorius HOM05D007567 ORTHO05D000126 1.2e-08 63.5 107 27.1
Atru.chr12.2439 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-08 63.2 102 27.5
Atru.chr13.891 Acer truncatum HOM05D000003 ORTHO05D000126 1.6e-08 63.2 100 30.0
Atru.chr6.1368 Acer truncatum HOM05D000003 ORTHO05D000126 2.1e-08 62.8 90 32.2
ECA248G1040 Erigeron canadensis HOM05D000003 ORTHO05D000007 2.1e-08 62.8 106 32.1
QL05p033866 Quercus lobata HOM05D000003 ORTHO05D000126 2.1e-08 62.8 112 30.4
Haze_09938 Corylus avellana HOM05D000003 ORTHO05D000126 2.7e-08 62.4 90 34.4
Rhsim11G0149500 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.5e-08 62.0 96 35.4
Sed0025570 Sechium edule HOM05D000003 ORTHO05D000126 3.5e-08 62.0 103 31.1
QL01p029685 Quercus lobata HOM05D000003 ORTHO05D000126 4.6e-08 61.6 110 24.5
QL06p026526 Quercus lobata HOM05D003998 ORTHO05D005144 4.6e-08 61.6 113 29.2
Atru.chr3.1568 Acer truncatum HOM05D000003 ORTHO05D000126 7.8e-08 60.8 108 27.8
Atru.chr3.1587 Acer truncatum HOM05D000003 ORTHO05D000004 7.8e-08 60.8 108 27.8
COL.COLO4_06478 Corchorus olitorius HOM05D000003 ORTHO05D000126 7.8e-08 60.8 101 26.7
QL04p084567 Quercus lobata HOM05D000003 ORTHO05D000126 7.8e-08 60.8 101 30.7
Rhsim10G0077300 Rhododendron simsii HOM05D000003 ORTHO05D000126 7.8e-08 60.8 82 32.9
CSS0020689 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000126 1.0e-07 60.5 102 29.4
Rhsim07G0162600 Rhododendron simsii HOM05D000358 ORTHO05D005121 1.0e-07 60.5 110 29.1
COL.COLO4_19700 Corchorus olitorius HOM05D007567 ORTHO05D000126 1.3e-07 60.1 90 28.9
Lj4C893T10 Lonicera japonica HOM05D000003 ORTHO05D000126 1.3e-07 60.1 111 29.7
QL02p003383 Quercus lobata HOM05D000003 ORTHO05D000126 1.3e-07 60.1 116 24.1
QL06p022045 Quercus lobata HOM05D000003 ORTHO05D000126 1.3e-07 60.1 109 26.6
COL.COLO4_20867 Corchorus olitorius HOM05D007567 ORTHO05D000126 1.7e-07 59.7 130 26.9
Sc21g0002580 Simmondsia chinensis HOM05D000003 ORTHO05D000126 1.7e-07 59.7 109 25.7
Lj3g0020321 Lotus japonicus HOM05D000003 ORTHO05D000126 2.3e-07 59.3 99 31.3
Lj4g0019340 Lotus japonicus HOM05D000003 ORTHO05D000126 2.3e-07 59.3 99 31.3
CSS0003648 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000126 3.0e-07 58.9 102 30.4
LjContig00312_ERROPOS870357g0011324 Lotus japonicus HOM05D000003 ORTHO05D000126 3.0e-07 58.9 110 24.5
COL.COLO4_03297 Corchorus olitorius HOM05D007567 ORTHO05D000126 3.9e-07 58.5 97 27.8
Rhsim09G0090900 Rhododendron simsii HOM05D000003 ORTHO05D000126 3.9e-07 58.5 113 28.3
QL09p002839 Quercus lobata HOM05D000003 ORTHO05D000126 5.1e-07 58.2 107 28.0
Rhsim10G0112300 Rhododendron simsii HOM05D000003 ORTHO05D000126 5.1e-07 58.2 96 32.3
COL.COLO4_08907 Corchorus olitorius HOM05D000003 ORTHO05D000126 6.6e-07 57.8 97 28.9
QL01p041898 Quercus lobata HOM05D000003 ORTHO05D000126 6.6e-07 57.8 109 25.7
QL03p018940 Quercus lobata HOM05D000003 ORTHO05D000126 6.6e-07 57.8 111 24.3
TAR256G0004 Trochodendron aralioides HOM05D000003 ORTHO05D000126 6.6e-07 57.8 88 28.4
COL.COLO4_35935 Corchorus olitorius HOM05D007567 ORTHO05D000126 8.6e-07 57.4 112 25.0
ECA236G4852 Erigeron canadensis HOM05D007803 ORTHO05D009814 8.6e-07 57.4 84 29.8
Lj6g0025856 Lotus japonicus HOM05D000003 ORTHO05D000126 8.6e-07 57.4 110 23.6
Haze_08252 Corylus avellana HOM05D009546 ORTHO05D014580 1.1e-06 57.0 92 28.3
Rhsim07G0116500 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.1e-06 57.0 111 30.6
Atru.chr1.1589 Acer truncatum HOM05D000003 ORTHO05D000126 1.9e-06 56.2 86 31.4
QL06p049455 Quercus lobata HOM05D000003 ORTHO05D000126 1.9e-06 56.2 109 23.9
Atru.chr13.1579 Acer truncatum HOM05D000003 ORTHO05D000126 2.5e-06 55.8 100 26.0
COL.COLO4_11269 Corchorus olitorius HOM05D013553 ORTHO05D000126 2.5e-06 55.8 106 29.2
QL04p044617 Quercus lobata HOM05D000003 ORTHO05D000126 2.5e-06 55.8 99 28.3
QL05p043073 Quercus lobata HOM05D000003 ORTHO05D000126 2.5e-06 55.8 111 27.0
Rhsim04G0115200 Rhododendron simsii HOM05D000003 ORTHO05D000126 2.5e-06 55.8 112 27.7
COL.COLO4_13287 Corchorus olitorius HOM05D000003 ORTHO05D000126 3.3e-06 55.5 100 30.0
Lj6P424T4 Lonicera japonica HOM05D000003 ORTHO05D000126 3.3e-06 55.5 100 27.0
Oeu027302.1 Olea europaea HOM05D000003 ORTHO05D000126 3.3e-06 55.5 111 27.9
Oeu027303.1 Olea europaea HOM05D000003 ORTHO05D000126 3.3e-06 55.5 111 27.9
Oeu027304.1 Olea europaea HOM05D000003 ORTHO05D000126 3.3e-06 55.5 111 27.9
Rhsim04G0150700 Rhododendron simsii HOM05D000003 ORTHO05D000126 3.3e-06 55.5 113 26.5
COL.COLO4_35439 Corchorus olitorius HOM05D007567 ORTHO05D000126 4.3e-06 55.1 65 36.9
COL.COLO4_36354 Corchorus olitorius HOM05D007567 ORTHO05D000126 4.3e-06 55.1 68 35.3
Lj2g0023122 Lotus japonicus HOM05D000003 ORTHO05D000126 4.3e-06 55.1 98 25.5
QL03p071069 Quercus lobata HOM05D000003 ORTHO05D000126 4.3e-06 55.1 109 24.8
TPR.G1529 Trifolium pratense HOM05D000003 ORTHO05D000004 4.3e-06 55.1 102 29.4
Atru.chr12.2219 Acer truncatum HOM05D000003 ORTHO05D000126 5.6e-06 54.7 103 29.1
COL.COLO4_19587 Corchorus olitorius HOM05D007567 ORTHO05D000126 5.6e-06 54.7 89 25.8
QL02p095718 Quercus lobata HOM05D000003 ORTHO05D000126 5.6e-06 54.7 109 24.8
Atru.chr1.2555 Acer truncatum HOM05D000003 ORTHO05D000126 7.3e-06 54.3 103 28.2
AUR62032744 Chenopodium quinoa HOM05D000003 ORTHO05D000126 7.3e-06 54.3 94 33.0
Eucgr.I02046 Eucalyptus grandis HOM05D000003 ORTHO05D000126 7.3e-06 54.3 102 27.5
QL07p034223 Quercus lobata HOM05D000003 ORTHO05D000126 7.3e-06 54.3 106 25.5
Sopen00g006710 Solanum pennellii HOM05D000003 ORTHO05D000004 7.3e-06 54.3 109 28.4
Sopen12g011790 Solanum pennellii HOM05D000003 ORTHO05D000004 7.3e-06 54.3 99 30.3
COL.COLO4_03520 Corchorus olitorius HOM05D007567 ORTHO05D000126 9.5e-06 53.9 97 27.8
Lj6P432T2 Lonicera japonica HOM05D000003 ORTHO05D000126 9.5e-06 53.9 100 27.0
Rhsim09G0068100 Rhododendron simsii HOM05D000003 ORTHO05D000006 9.5e-06 53.9 111 26.1
Sopen00g009650 Solanum pennellii HOM05D000003 ORTHO05D000004 9.5e-06 53.9 99 28.3
Sopen00g011480 Solanum pennellii HOM05D000003 ORTHO05D000007 9.5e-06 53.9 99 29.3
TPR.G13276 Trifolium pratense HOM05D000003 ORTHO05D000004 9.5e-06 53.9 102 29.4


User provided reference genes

Program Settings