Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 2149.4 1081 100.0
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1861.7 1085 86.4
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1833.2 1083 84.0
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1829.7 1100 83.6
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1819.7 1086 83.8
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1800.4 1086 82.4
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1798.5 1090 82.9
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1796.9 1093 82.3
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1796.6 1093 82.3
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1795.8 1090 82.5
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1795.8 1089 82.2
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1793.9 1091 82.2
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1793.1 1087 83.1
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1779.6 1082 82.1
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1776.5 1083 81.2
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1772.3 1085 81.7
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1772.3 1091 82.2
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1768.4 1083 80.4
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1767.7 1086 81.9
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1764.6 1099 81.1
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1763.8 1084 81.4
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1762.3 1087 80.7
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1755.0 1085 80.2
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1751.1 1085 79.8
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1749.9 1092 80.5
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1748.8 1114 79.3
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1748.4 1086 80.1
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1746.9 1085 79.4
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1746.5 1091 81.1
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1744.6 1082 80.1
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1743.0 1089 79.7
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1743.0 1075 81.4
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1736.9 1087 79.5
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1735.7 1089 80.6
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1733.0 1081 79.0
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1728.8 1092 80.5
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1726.1 1086 78.9
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1725.7 1089 79.2
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1724.9 1081 79.6
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1722.2 1083 79.5
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1713.7 1082 78.8
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1713.4 1082 78.8
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1713.0 1082 78.7
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1712.6 1105 78.7
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1711.8 1025 82.4
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1709.1 1096 77.6
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1707.6 1119 76.5
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1706.4 1129 76.6
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1706.0 1082 78.6
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1702.6 1091 78.4
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1701.4 1077 78.8
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1696.8 1059 80.5
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1695.6 1086 78.4
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1695.2 1081 78.7
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1693.7 1082 78.2
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1692.2 1089 76.8
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1691.8 1081 78.3
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1690.2 1108 76.4
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1689.5 1095 77.0
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1687.9 1096 76.7
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1686.8 1181 73.3
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1678.3 1007 81.5
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1675.2 1082 76.5
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1674.4 1090 77.3
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1673.7 1084 77.9
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1672.9 1082 77.5
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1667.9 1083 77.1
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1667.1 1086 77.2
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1665.6 1086 76.3
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1665.2 1087 76.4
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1662.5 1086 76.2
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1662.5 1086 76.2
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1661.7 1086 75.9
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1660.6 1083 76.7
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1658.7 1082 76.2
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1657.5 1081 76.5
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1655.2 1094 75.3
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1655.2 1082 76.5
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1651.3 1083 75.7
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1648.6 1089 75.5
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1647.5 1085 75.5
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1647.1 1169 71.6
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1645.6 1088 75.7
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1642.9 1083 75.5
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1642.5 1079 75.6
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1642.1 1085 75.1
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1642.1 1198 70.4
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1640.9 1083 75.4
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1639.4 1085 75.4
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1636.3 1085 75.2
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1633.2 1081 75.0
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1629.8 1075 75.6
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1626.7 1087 74.6
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1625.1 1116 73.9
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1625.1 1090 75.0
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1623.6 1096 74.4
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1622.8 1084 74.7
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1621.7 1086 74.3
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1620.9 1079 75.2
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1618.6 1092 74.6
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1607.0 1080 75.5
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1606.7 1146 71.3
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1604.3 1117 72.9
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1602.4 1083 74.4
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1572.8 1115 72.0
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1558.9 1049 73.9
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1520.0 969 76.7
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1514.2 869 85.5
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1513.4 914 81.1
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1501.1 1091 72.1
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1486.5 1014 72.7
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1469.1 1017 69.6
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1442.6 1019 68.1
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1418.3 1111 68.1
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1417.1 1111 68.0
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1390.9 958 70.4
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1344.7 801 82.0
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1293.1 1003 64.4
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1233.0 1072 60.7
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1232.6 847 74.3
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1186.8 748 78.6
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1171.4 751 78.7
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1152.5 722 78.5
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1132.9 1053 55.3
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1112.8 981 55.0
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1089.7 988 55.7
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 1.7e-303 1046.2 739 70.4
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 1.8e-292 1009.6 884 59.7
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 3.9e-279 965.3 889 58.7
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 6.0e-272 941.4 777 59.7
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.2e-264 917.1 596 77.7
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 3.4e-259 899.0 580 74.3
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 2.9e-242 842.8 980 44.1
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.0e-218 764.6 671 57.2
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 2.5e-209 733.4 642 60.3
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 3.4e-206 723.0 451 80.0
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 2.9e-205 719.9 704 55.1
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 1.2e-187 661.4 418 77.8
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.3e-181 641.3 505 67.7
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 5.6e-177 625.9 413 76.3
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.3e-176 624.8 524 64.1
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 4.2e-164 583.2 478 66.5
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 7.9e-163 578.9 1028 37.3
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 1.8e-162 577.8 347 84.1
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 4.8e-152 543.1 393 65.1
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 6.7e-138 496.1 393 65.6
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 4.1e-135 486.9 408 63.5
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 3.5e-134 483.8 309 75.7
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 6.1e-131 473.0 326 71.5
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 1.7e-109 401.7 983 30.8
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 2.1e-107 394.8 946 29.2
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 4.4e-105 387.1 283 71.4
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 3.9e-101 374.0 227 80.6
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 2.8e-99 367.9 991 28.0
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 4.6e-86 323.9 907 28.7
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.5e-81 308.9 154 90.3
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 6.9e-58 230.3 222 54.5
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 1.1e-55 223.0 881 23.4
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 8.7e-53 213.4 332 35.8
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 5.6e-52 210.7 312 43.6
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 1.1e-47 196.4 124 79.8
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 1.6e-46 192.6 217 54.8
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 1.1e-44 186.4 156 63.5
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 2.8e-43 181.8 164 59.1
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 3.7e-43 181.4 154 59.1
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 5.3e-42 177.6 273 39.9
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 2.2e-40 172.2 156 64.7
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 2.3e-37 162.2 125 68.8
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 4.8e-35 154.5 469 28.1
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 5.3e-34 151.0 149 53.0
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 2.5e-31 142.1 162 42.6
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 1.3e-27 129.8 105 59.0
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 1.8e-26 125.9 430 26.3
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 7.2e-23 114.0 297 25.9
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 3.6e-22 111.7 99 58.6
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.4e-18 99.0 83 65.1
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 2.6e-12 79.0 51 70.6
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 5.7e-12 77.8 55 63.6
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 1.7e-11 76.3 56 62.5
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 2.8e-11 75.5 48 72.9
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 9.1e-10 70.5 79 50.6
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 5.0e-08 64.7 178 38.8
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 1.1e-07 63.5 36 80.6


User provided reference genes

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