Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 0.0e+00 2649.8 1352 100.0
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 0.0e+00 1774.6 1366 68.2
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1255.4 1359 52.6
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1249.6 1356 52.6
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 0.0e+00 1242.3 1347 52.3
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1232.6 1350 51.3
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 1207.2 1353 51.5
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 0.0e+00 1203.0 1372 49.8
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 0.0e+00 1199.9 1351 51.3
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1181.0 1338 50.6
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1172.5 1372 49.9
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 0.0e+00 1171.8 1322 51.1
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 0.0e+00 1170.6 1349 50.0
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 0.0e+00 1169.5 1324 50.2
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1164.8 1357 49.9
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1163.7 1332 49.3
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 0.0e+00 1161.4 1347 49.1
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1160.6 1339 49.6
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 0.0e+00 1154.4 1362 49.0
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 0.0e+00 1153.3 1352 48.8
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1151.3 1357 48.8
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 0.0e+00 1147.1 1350 50.1
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1143.6 1348 48.8
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1135.6 1347 48.5
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1128.6 1253 50.8
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 0.0e+00 1124.0 1346 49.3
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 0.0e+00 1104.4 1351 48.3
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 0.0e+00 1095.1 1359 47.9
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 0.0e+00 1087.8 1321 48.3
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 0.0e+00 1078.9 1352 46.3
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 0.0e+00 1077.0 1323 47.9
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 8.3e-311 1070.8 1351 47.0
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 2.4e-310 1069.3 1351 47.6
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 5.4e-310 1068.1 1452 44.2
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 1.6e-301 1040.0 1277 47.8
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 3.5e-301 1038.9 1354 46.7
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 7.8e-301 1037.7 1360 46.4
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 4.3e-299 1031.9 1352 45.6
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 1.2e-298 1030.4 1280 48.0
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 1.8e-297 1026.5 1359 46.2
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 5.2e-297 1025.0 1355 46.1
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 2.2e-287 993.0 1196 49.0
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 1.4e-281 973.8 1346 43.8
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 1.5e-280 970.3 1345 43.7
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 1.4e-278 963.8 1268 44.2
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 4.1e-278 962.2 1353 44.2
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 9.2e-278 961.1 1253 45.0
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 7.3e-275 951.4 1315 44.5
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 1.6e-274 950.3 1289 44.8
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 1.6e-274 950.3 1331 42.7
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 2.8e-274 949.5 1337 43.5
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 1.4e-273 947.2 1354 43.1
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 4.0e-273 945.7 1324 43.2
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 1.2e-269 934.1 1222 45.8
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 2.7e-269 932.9 1318 43.2
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 3.5e-269 932.6 1328 42.5
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 7.3e-267 924.9 1325 42.9
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 1.8e-265 920.2 1248 44.8
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 1.5e-264 917.1 1317 42.4
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 2.2e-263 913.3 1250 44.8
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 3.2e-262 909.4 1333 42.6
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 5.3e-257 892.1 1323 42.3
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 6.9e-257 891.7 1338 42.5
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 1.5e-256 890.6 1350 42.1
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 7.6e-256 888.3 1344 41.2
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.6e-253 880.6 1326 43.0
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 2.1e-253 880.2 1327 42.1
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 4.6e-253 879.0 1327 41.7
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 3.3e-251 872.8 1333 42.3
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 2.2e-247 860.1 1324 41.8
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 1.1e-246 857.8 1339 42.5
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 1.8e-244 850.5 1365 40.2
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 3.7e-234 816.2 1317 40.2
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 2.6e-232 810.1 727 61.6
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 3.0e-228 796.6 1309 40.3
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 7.4e-227 792.0 1345 39.2
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 1.5e-224 784.3 1280 39.9
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 4.4e-219 766.1 1350 37.8
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 2.0e-216 757.3 1350 39.2
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 1.3e-215 754.6 1341 38.0
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 1.2e-205 721.5 1242 39.0
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 8.2e-202 708.8 1275 37.6
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 1.3e-199 701.4 698 58.0
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 2.7e-197 693.7 1141 39.6
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 3.4e-195 686.8 1089 39.9
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 1.7e-194 684.5 1283 36.2
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 2.8e-194 683.7 1235 37.7
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 7.2e-190 669.1 1312 36.5
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 1.2e-184 651.7 1064 37.9
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 7.3e-182 642.5 1265 35.8
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.2e-179 635.2 1175 36.9
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 3.4e-179 633.6 572 58.0
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 6.0e-168 596.3 729 50.3
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 3.1e-164 583.9 685 49.6
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 6.8e-164 582.8 1198 35.2
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 2.1e-157 561.2 697 48.5
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 8.1e-149 532.7 729 46.6
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 2.7e-144 517.7 618 46.6
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 1.5e-126 458.8 700 38.9
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 1.6e-125 455.3 813 38.5
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 2.8e-125 454.5 769 40.1
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 2.5e-121 441.4 643 42.3
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 2.7e-104 384.8 774 33.1
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 5.3e-100 370.5 909 35.0
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 1.1e-97 362.8 680 38.1
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 2.7e-96 358.2 691 38.1
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 5.7e-94 350.5 810 30.1
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 7.0e-92 343.6 362 53.0
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 6.8e-87 327.0 595 36.0
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 3.6e-80 304.7 876 31.2
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 1.1e-57 229.9 983 25.6
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.7e-45 189.5 294 38.4
Nn6g33590 Nelumbo nucifera HOM05D052452 ORTHO05D006357 2.9e-45 188.7 114 93.9
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 1.4e-39 169.9 271 38.0
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 6.4e-37 161.0 579 30.1
Nn4g23347 Nelumbo nucifera HOM05D052452 ORTHO05D006357 2.5e-33 149.1 86 93.0
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 3.6e-32 145.2 260 33.1
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 1.7e-29 136.3 575 30.4
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 5.4e-28 131.3 452 25.7
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 2.5e-25 122.5 117 56.4
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 2.0e-22 112.8 403 26.6
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 7.6e-22 110.9 201 36.8
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 1.6e-19 103.2 407 25.6
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 2.3e-18 99.4 425 22.6
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 1.9e-17 96.3 184 38.0
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 5.6e-17 94.7 556 27.5
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 2.1e-16 92.8 581 28.6
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 8.1e-16 90.9 581 28.2
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 1.8e-15 89.7 580 27.6
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.2e-14 87.0 289 32.9
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.2e-14 87.0 289 32.9
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 2.6e-14 85.9 594 26.1
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 5.8e-14 84.7 590 25.8
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 2.2e-13 82.8 555 27.6
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 2.2e-13 82.8 555 27.6
Medtr8g079870 Medicago truncatula HOM05D006144 ORTHO05D006357 6.0e-11 74.7 82 48.8
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 7.9e-11 74.3 583 23.7
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 8.7e-10 70.9 301 23.6
TPR.G19009 Trifolium pratense HOM05D006144 ORTHO05D006357 1.9e-09 69.7 91 40.7
GSVIVG01002722001 Vitis vinifera HOM05D006144 ORTHO05D006357 8.2e-08 64.3 88 38.6
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 5.3e-07 61.6 564 22.3
SEGI_01818 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 4.5e-06 58.5 90 37.8


User provided reference genes

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