Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.9e-77 292.4 141 100.0
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 7.1e-64 247.3 122 96.7
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 5.3e-59 231.1 122 87.7
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 5.3e-59 231.1 122 87.7
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 2.4e-56 222.2 122 84.4
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 1.6e-55 219.5 122 84.4
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 4.6e-55 218.0 122 82.8
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 7.9e-55 217.2 122 82.0
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 3.0e-54 215.3 122 81.1
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 3.0e-54 215.3 132 78.8
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 3.9e-54 214.9 122 81.1
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 3.9e-54 214.9 122 80.3
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 3.9e-54 214.9 122 79.5
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 5.1e-54 214.5 122 81.1
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 6.7e-54 214.2 123 81.3
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 6.7e-54 214.2 122 78.7
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 8.7e-54 213.8 122 79.5
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 1.1e-53 213.4 122 82.0
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 1.5e-53 213.0 122 77.9
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 1.9e-53 212.6 122 80.3
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 1.9e-53 212.6 122 78.7
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 2.5e-53 212.2 121 81.0
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 3.3e-53 211.8 122 81.1
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 3.3e-53 211.8 122 78.7
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 4.3e-53 211.5 122 80.3
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 4.3e-53 211.5 122 79.5
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 5.6e-53 211.1 122 79.5
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 7.4e-53 210.7 122 78.7
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 9.6e-53 210.3 123 78.9
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 9.6e-53 210.3 122 79.5
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 1.3e-52 209.9 143 68.5
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 1.6e-52 209.5 122 78.7
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 1.6e-52 209.5 123 78.9
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 2.8e-52 208.8 125 77.6
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 2.8e-52 208.8 122 78.7
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 3.6e-52 208.4 122 77.9
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 4.8e-52 208.0 123 78.9
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 4.8e-52 208.0 122 79.5
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 8.1e-52 207.2 122 77.0
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 8.1e-52 207.2 122 77.0
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 1.1e-51 206.8 121 78.5
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 1.1e-51 206.8 122 79.5
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 1.1e-51 206.8 122 78.7
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 1.1e-51 206.8 122 77.9
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 1.4e-51 206.5 122 77.9
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 1.4e-51 206.5 122 78.7
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 1.4e-51 206.5 122 76.2
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 1.4e-51 206.5 122 76.2
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 1.4e-51 206.5 122 76.2
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 1.8e-51 206.1 122 77.9
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 2.4e-51 205.7 122 76.2
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 2.4e-51 205.7 122 74.6
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 2.4e-51 205.7 122 77.0
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 4.0e-51 204.9 122 76.2
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 4.0e-51 204.9 122 77.0
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 4.0e-51 204.9 122 77.0
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 4.0e-51 204.9 122 76.2
Nn6g33602 Nelumbo nucifera HOM05D004394 ORTHO05D005208 5.3e-51 204.5 116 87.1
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 5.3e-51 204.5 122 74.6
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 6.9e-51 204.1 122 76.2
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 6.9e-51 204.1 122 75.4
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 9.0e-51 203.8 109 88.1
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 9.0e-51 203.8 124 75.8
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 1.2e-50 203.4 123 76.4
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 1.2e-50 203.4 122 76.2
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 1.5e-50 203.0 122 77.0
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 2.0e-50 202.6 122 75.4
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 2.0e-50 202.6 124 79.0
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 2.0e-50 202.6 122 75.4
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 2.6e-50 202.2 125 76.0
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 2.6e-50 202.2 125 76.0
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 2.6e-50 202.2 122 77.0
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 2.6e-50 202.2 124 77.4
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 3.4e-50 201.8 122 75.4
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 3.4e-50 201.8 122 75.4
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 4.5e-50 201.4 122 73.8
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 5.8e-50 201.1 130 70.8
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 5.8e-50 201.1 123 74.8
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 5.8e-50 201.1 124 77.4
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 5.8e-50 201.1 124 77.4
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 5.8e-50 201.1 121 73.6
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 5.8e-50 201.1 125 75.2
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 7.6e-50 200.7 124 75.8
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 7.6e-50 200.7 125 75.2
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 7.6e-50 200.7 123 74.0
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 7.6e-50 200.7 122 76.2
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 1.7e-49 199.5 122 73.0
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 1.7e-49 199.5 122 73.8
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 1.7e-49 199.5 123 74.0
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 2.2e-49 199.1 127 72.4
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 2.2e-49 199.1 127 72.4
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 2.9e-49 198.7 122 73.0
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 2.9e-49 198.7 124 76.6
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 2.9e-49 198.7 124 74.2
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 3.8e-49 198.4 123 77.2
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 3.8e-49 198.4 123 73.2
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 3.8e-49 198.4 124 72.6
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 4.9e-49 198.0 122 73.0
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 4.9e-49 198.0 125 73.6
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 4.9e-49 198.0 124 76.6
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 4.9e-49 198.0 122 74.6
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 4.9e-49 198.0 115 80.9
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 8.4e-49 197.2 124 74.2
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 1.1e-48 196.8 124 73.4
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 1.1e-48 196.8 124 75.8
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 1.1e-48 196.8 115 77.4
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 1.1e-48 196.8 122 73.0
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 1.4e-48 196.4 124 73.4
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 1.4e-48 196.4 122 73.0
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 2.4e-48 195.7 124 73.4
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 5.5e-48 194.5 122 71.3
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 5.5e-48 194.5 122 73.8
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 7.1e-48 194.1 124 72.6
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 7.1e-48 194.1 123 74.8
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 9.3e-48 193.7 122 73.0
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 1.6e-47 193.0 126 70.6
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 1.6e-47 193.0 126 70.6
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 1.6e-47 193.0 124 71.8
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 1.6e-47 193.0 125 71.2
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 2.1e-47 192.6 115 74.8
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 2.7e-47 192.2 123 75.6
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 2.7e-47 192.2 123 69.9
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 6.0e-47 191.0 122 69.7
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 1.0e-46 190.3 126 69.8
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 1.0e-46 190.3 124 72.6
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 1.3e-46 189.9 124 71.8
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 2.3e-46 189.1 124 73.4
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 6.7e-46 187.6 124 71.0
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 1.1e-45 186.8 124 72.6
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 2.5e-45 185.7 124 71.8
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 3.3e-45 185.3 124 71.8
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 4.3e-45 184.9 122 68.0
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 9.6e-45 183.7 123 69.9
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 1.6e-44 183.0 124 70.2
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 1.6e-44 183.0 122 73.0
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 2.8e-44 182.2 122 66.4
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 3.7e-44 181.8 122 69.7
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 3.7e-44 181.8 122 69.7
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 4.8e-44 181.4 122 66.4
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 6.2e-44 181.0 117 72.6
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 3.1e-43 178.7 121 66.9
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 9.0e-43 177.2 125 66.4
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 2.0e-42 176.0 115 68.7
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 2.0e-42 176.0 113 72.6
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 2.6e-42 175.6 122 67.2
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 7.6e-42 174.1 115 69.6
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 7.6e-42 174.1 122 61.5
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 1.0e-41 173.7 118 67.8
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 1.3e-41 173.3 120 65.8
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 6.5e-41 171.0 114 68.4
Cpa.g.sc247.5 Carica papaya HOM05D004394 ORTHO05D005208 4.6e-39 164.9 122 66.4
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 2.3e-38 162.5 122 61.5
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 4.1e-35 151.8 122 58.2
Nn8g39569 Nelumbo nucifera HOM05D004394 ORTHO05D005208 9.0e-35 150.6 106 72.6
CiPaw.07G180000 Carya illinoinensis HOM05D004394 ORTHO05D005208 4.5e-34 148.3 106 67.9
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 6.5e-33 144.4 86 70.9
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 1.1e-32 143.7 131 50.4
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 6.1e-31 137.9 131 48.9
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 3.3e-29 132.1 122 51.6
PRCOL_00005343 Prasinoderma coloniale HOM05D004394 ORTHO05D005208 3.3e-29 132.1 131 48.9
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 2.2e-28 129.4 123 55.3
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 1.1e-24 117.1 115 52.2
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 3.9e-22 108.6 68 70.6
Haze_27710 Corylus avellana HOM05D004394 ORTHO05D005208 5.7e-21 104.8 122 45.1
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 5.7e-21 104.8 63 71.4
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 2.2e-20 102.8 68 69.1
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 4.8e-20 101.7 57 82.5
HanXRQChr03g0069311 Helianthus annuus HOM05D004394 ORTHO05D005208 4.5e-10 68.6 39 71.8


User provided reference genes

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