Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 1.3e-76 289.7 149 100.0
Nn1g05455 Nelumbo nucifera HOM05D008046 ORTHO05D004477 5.2e-33 144.8 152 57.9
TAR625G0942 Trochodendron aralioides HOM05D008046 ORTHO05D004477 7.8e-29 131.0 141 56.0
Atru.chr3.1344 Acer truncatum HOM05D008176 ORTHO05D004477 2.9e-23 112.5 143 50.3
TAR628G0226 Trochodendron aralioides HOM05D008046 ORTHO05D004477 2.9e-23 112.5 143 52.4
QL06p048130 Quercus lobata HOM05D008176 ORTHO05D004477 1.9e-22 109.8 137 49.6
TAR381G0533 Trochodendron aralioides HOM05D008046 ORTHO05D004477 2.1e-21 106.3 150 48.0
GSVIVG01009081001 Vitis vinifera HOM05D008046 ORTHO05D004477 7.8e-21 104.4 149 47.0
CiPaw.03G145800 Carya illinoinensis HOM05D008176 ORTHO05D004477 5.6e-19 98.2 151 47.7
Aqoxy6G00716 Aquilegia oxysepala HOM05D008046 ORTHO05D004477 7.3e-19 97.8 159 41.5
Thecc.01G095600 Theobroma cacao HOM05D008176 ORTHO05D004477 9.6e-19 97.4 154 46.1
CSS0041686 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.1e-18 96.3 145 48.3
CSS0046665 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 4.8e-18 95.1 145 48.3
Hma1.2p1_0019F.1_g013800 Hydrangea macrophylla HOM05D013332 ORTHO05D004477 5.3e-17 91.7 167 35.9
Haze_24851 Corylus avellana HOM05D008176 ORTHO05D004477 1.5e-16 90.1 149 43.6
QL02p002440 Quercus lobata HOM05D008046 ORTHO05D004477 3.4e-16 89.0 145 42.1
Peaxi162Scf00237g00201 Petunia axillaris HOM05D008176 ORTHO05D004477 4.5e-16 88.6 142 45.1
COL.COLO4_27295 Corchorus olitorius HOM05D008176 ORTHO05D004477 5.8e-16 88.2 153 42.5
Duzib187G0825 Durio zibethinus HOM05D008176 ORTHO05D004477 5.8e-16 88.2 159 44.7
Sopen11g005030 Solanum pennellii HOM05D008176 ORTHO05D004477 2.2e-15 86.3 141 44.0
Gohir.A02G129700 Gossypium hirsutum HOM05D008176 ORTHO05D004477 2.9e-15 85.9 142 42.3
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 4.9e-15 85.1 161 43.5
TWI53G0271 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 8.4e-15 84.3 139 42.4
Sabra07G0080300 Salix brachista HOM05D008176 ORTHO05D004477 1.1e-14 84.0 136 42.6
Thecc.08G102400 Theobroma cacao HOM05D008046 ORTHO05D004477 1.1e-14 84.0 158 43.0
CSS0034401 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.4e-14 83.6 149 45.0
CiPaw.04G103600 Carya illinoinensis HOM05D008176 ORTHO05D004477 1.4e-14 83.6 141 41.8
Sopen05g029890 Solanum pennellii HOM05D008176 ORTHO05D004477 1.4e-14 83.6 135 43.0
Potri.005G072000 Populus trichocarpa HOM05D008176 ORTHO05D004477 1.9e-14 83.2 148 40.5
Gorai.003G041400 Gossypium raimondii HOM05D008176 ORTHO05D004477 2.4e-14 82.8 142 40.8
Gohir.D03G040500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 3.2e-14 82.4 142 40.8
MSTRG.23362 Avicennia marina HOM05D008176 ORTHO05D004477 4.2e-14 82.0 140 43.6
Manes.12G129900 Manihot esculenta HOM05D008176 ORTHO05D004477 4.2e-14 82.0 140 40.0
Cfa002600 Carpinus fangiana HOM05D008176 ORTHO05D004477 5.4e-14 81.6 143 39.2
Duzib264G0386 Durio zibethinus HOM05D008176 ORTHO05D004477 5.4e-14 81.6 153 42.5
CSS0039341 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 7.1e-14 81.3 149 44.3
Manes.02G149300 Manihot esculenta HOM05D008046 ORTHO05D004477 9.3e-14 80.9 151 39.7
Manes.13G096700 Manihot esculenta HOM05D008176 ORTHO05D004477 9.3e-14 80.9 137 43.1
PGSC0003DMG400016149 Solanum tuberosum HOM05D008176 ORTHO05D004477 9.3e-14 80.9 141 42.6
Hma1.2p1_1148F.1_g261600 Hydrangea macrophylla HOM05D008046 ORTHO05D004477 1.2e-13 80.5 142 40.8
Ca_08988_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 1.6e-13 80.1 148 37.8
Eucgr.B00040 Eucalyptus grandis HOM05D008046 ORTHO05D004477 1.6e-13 80.1 163 41.1
Solyc11g010250.1 Solanum lycopersicum HOM05D008176 ORTHO05D004477 1.6e-13 80.1 142 42.3
CiPaw.15G046100 Carya illinoinensis HOM05D008046 ORTHO05D004477 2.1e-13 79.7 151 37.7
CiPaw.16G033000 Carya illinoinensis HOM05D008046 ORTHO05D004477 2.1e-13 79.7 154 36.4
RcHm_v2.0_Chr2g0112381 Rosa chinensis HOM05D013332 ORTHO05D004477 2.1e-13 79.7 175 39.4
FAN23G0907 Fragaria x ananassa HOM05D013332 ORTHO05D004477 4.6e-13 78.6 176 37.5
CDE05G1898 Ceratophyllum demersum HOM05D000157 ORTHO05D000691 6.0e-13 78.2 118 48.3
Potri.002G100500 Populus trichocarpa HOM05D008046 ORTHO05D004477 6.0e-13 78.2 155 37.4
Cc10_g06700 Coffea canephora HOM05D008046 ORTHO05D004477 7.9e-13 77.8 147 39.5
Gorai.007G059700 Gossypium raimondii HOM05D008176 ORTHO05D004477 7.9e-13 77.8 160 42.5
Gohir.A11G051100 Gossypium hirsutum HOM05D008176 ORTHO05D004477 1.0e-12 77.4 160 43.1
Dinv13234 Davidia involucrata HOM05D008176 ORTHO05D004477 1.8e-12 76.6 134 43.3
Sc03g0000170 Simmondsia chinensis HOM05D031888 ORTHO05D004477 1.8e-12 76.6 194 36.1
DCAR_014203 Daucus carota HOM05D013332 ORTHO05D004477 3.0e-12 75.9 145 35.9
Medtr3g086830 Medicago truncatula HOM05D008176 ORTHO05D004477 3.9e-12 75.5 152 38.8
FAN28G1274 Fragaria x ananassa HOM05D013332 ORTHO05D004477 5.1e-12 75.1 174 35.6
Nitab4.5_0000128g0240 Nicotiana tabacum HOM05D008176 ORTHO05D004477 5.1e-12 75.1 128 42.2
Oeu048965.1 Olea europaea HOM05D008046 ORTHO05D004477 5.1e-12 75.1 156 40.4
Nitab4.5_0012818g0010 Nicotiana tabacum HOM05D008176 ORTHO05D004477 8.7e-12 74.3 139 38.1
Potri.005G161700 Populus trichocarpa HOM05D008046 ORTHO05D004477 1.1e-11 73.9 146 38.4
TPR.G16006 Trifolium pratense HOM05D008176 ORTHO05D004477 1.1e-11 73.9 151 37.7
Ciclev10002675m.g Citrus clementina HOM05D008046 ORTHO05D004477 1.5e-11 73.6 152 35.5
DCAR_019289 Daucus carota HOM05D008046 ORTHO05D004477 1.5e-11 73.6 150 39.3
Glyma.11G242100 Glycine max HOM05D008176 ORTHO05D004477 1.5e-11 73.6 136 42.6
Potri.007G097000 Populus trichocarpa HOM05D008176 ORTHO05D004477 1.5e-11 73.6 139 42.4
Prupe.1G522800 Prunus persica HOM05D018381 ORTHO05D004477 1.5e-11 73.6 156 41.7
PGSC0003DMG400016792 Solanum tuberosum HOM05D008176 ORTHO05D004477 1.5e-11 73.6 135 40.0
PGR031G3049 Punica granatum HOM05D008046 ORTHO05D004477 1.9e-11 73.2 156 38.5
Sc23g0000380 Simmondsia chinensis HOM05D008046 ORTHO05D004477 1.9e-11 73.2 143 40.6
TWI74G1149 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 1.9e-11 73.2 141 37.6
Phvul.001G253900 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 2.5e-11 72.8 126 42.1
FvH4_1g20240 Fragaria vesca HOM05D013332 ORTHO05D004477 3.3e-11 72.4 174 34.5
CSS0043643 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 4.3e-11 72.0 139 38.1
Cpa.g.sc55.74 Carica papaya HOM05D008176 ORTHO05D004477 4.3e-11 72.0 154 34.4
FAN19G2695 Fragaria x ananassa HOM05D013332 ORTHO05D004477 4.3e-11 72.0 174 34.5
FAN26G3011 Fragaria x ananassa HOM05D013332 ORTHO05D004477 4.3e-11 72.0 174 35.1
SalBow3G2508 Salvia bowleyana HOM05D029310 ORTHO05D004477 4.3e-11 72.0 133 38.3
SalBow3G3284 Salvia bowleyana HOM05D029310 ORTHO05D004477 4.3e-11 72.0 133 38.3
Haze_18268 Corylus avellana HOM05D008046 ORTHO05D004477 5.6e-11 71.6 157 36.3
Haze_18269 Corylus avellana HOM05D008046 ORTHO05D004477 5.6e-11 71.6 157 36.3
Gohir.D11G054500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 5.6e-11 71.6 166 39.8
VMungo1383G1959 Vigna mungo HOM05D008176 ORTHO05D004477 5.6e-11 71.6 130 40.8
Migut.H02240 Erythranthe guttata HOM05D008046 ORTHO05D004477 9.6e-11 70.9 146 42.5
Lsat_1_v5_gn_6_104300 Lactuca sativa HOM05D008046 ORTHO05D004477 9.6e-11 70.9 144 36.8
SalBow5G1479 Salvia bowleyana HOM05D008046 ORTHO05D004477 9.6e-11 70.9 154 37.7
Lalb_Chr23g0270371 Lupinus albus HOM05D008046 ORTHO05D004477 1.3e-10 70.5 159 33.3
Sc26g0000200 Simmondsia chinensis HOM05D013332 ORTHO05D004477 1.3e-10 70.5 143 37.1
Duzib116G0877 Durio zibethinus HOM05D008046 ORTHO05D004477 2.1e-10 69.7 155 38.1
Ah.02g126210 Amaranthus hybridus HOM05D031888 ORTHO05D004477 2.8e-10 69.3 185 34.6
MSTRG.3689 Avicennia marina HOM05D008046 ORTHO05D004477 3.7e-10 68.9 146 37.7
Sabra02G0078700 Salix brachista HOM05D008046 ORTHO05D004477 3.7e-10 68.9 149 36.9
SGA_v2.0_scaffold45G17135 Striga asiatica HOM05D010872 ORTHO05D004477 3.7e-10 68.9 153 39.9
CSS0015684 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 4.8e-10 68.6 139 38.1
Glyma.18G015000 Glycine max HOM05D008176 ORTHO05D004477 4.8e-10 68.6 121 42.1
Psat7g056440 Pisum sativum HOM05D008176 ORTHO05D004477 1.1e-09 67.4 142 39.4
Duzib041G0197 Durio zibethinus HOM05D008046 ORTHO05D004477 1.4e-09 67.0 162 35.2
Lj4g0008028 Lotus japonicus HOM05D008176 ORTHO05D004477 1.8e-09 66.6 144 41.7
Lalb_Chr08g0242201 Lupinus albus HOM05D008046 ORTHO05D004477 1.8e-09 66.6 165 33.3
COL.COLO4_12009 Corchorus olitorius HOM05D008046 ORTHO05D004477 3.1e-09 65.9 152 38.8
TPR.G6203 Trifolium pratense HOM05D008176 ORTHO05D004477 9.0e-09 64.3 144 37.5
Glyma.05G175800 Glycine max HOM05D008176 ORTHO05D004477 1.2e-08 63.9 140 35.0
Lsat_1_v5_gn_1_3180 Lactuca sativa HOM05D008046 ORTHO05D004477 1.5e-08 63.5 149 35.6
PGSC0003DMG400016791 Solanum tuberosum HOM05D008176 ORTHO05D004477 1.5e-08 63.5 125 38.4
Lalb_Chr10g0102531 Lupinus albus HOM05D008046 ORTHO05D004477 2.0e-08 63.2 161 34.8
Sopen05g029880 Solanum pennellii HOM05D008176 ORTHO05D004477 2.6e-08 62.8 120 39.2
Carub.0001s3286 Capsella rubella HOM05D010872 ORTHO05D013672 3.4e-08 62.4 114 41.2
Ciclev10026640m.g Citrus clementina HOM05D008176 ORTHO05D004477 3.4e-08 62.4 147 38.1
Glyma.04G099200 Glycine max HOM05D008046 ORTHO05D004477 3.4e-08 62.4 157 33.8
Gohir.A01G132600 Gossypium hirsutum HOM05D008046 ORTHO05D004477 3.4e-08 62.4 125 39.2
Phvul.002G260800 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 3.4e-08 62.4 149 33.6
CANSAT01G0943 Cannabis sativa HOM05D013332 ORTHO05D004477 5.8e-08 61.6 159 31.4
Gohir.A05G265833 Gossypium hirsutum HOM05D008046 ORTHO05D004477 7.6e-08 61.2 142 41.5
Sed0027320 Sechium edule HOM05D026294 ORTHO05D004477 2.2e-07 59.7 132 34.8
TPR.G24247 Trifolium pratense HOM05D008046 ORTHO05D004477 2.2e-07 59.7 155 32.3
Glyma.08G133100 Glycine max HOM05D008176 ORTHO05D004477 2.9e-07 59.3 140 34.3
Phvul.009G032900 Phaseolus vulgaris HOM05D008046 ORTHO05D004477 3.8e-07 58.9 145 31.0
RcHm_v2.0_Chr7g0242321 Rosa chinensis HOM05D018381 ORTHO05D004477 3.8e-07 58.9 165 33.9
Sed0003502 Sechium edule HOM05D010872 ORTHO05D013672 3.8e-07 58.9 133 36.8
Solyc04g074680.1 Solanum lycopersicum HOM05D010872 ORTHO05D004477 6.4e-07 58.2 146 32.2
BolC5t32474H Brassica oleracea HOM05D010872 ORTHO05D013672 8.4e-07 57.8 128 38.3
Ca_16509_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 8.4e-07 57.8 141 36.9
BcaC05g27742 Brassica carinata HOM05D010872 ORTHO05D013672 1.1e-06 57.4 128 38.3
C05p37280 Brassica napus HOM05D010872 ORTHO05D013672 1.1e-06 57.4 128 38.3
SGA_v2.0_scaffold115G32090 Striga asiatica HOM05D010872 ORTHO05D004477 1.1e-06 57.4 94 46.8
FAN04G3140 Fragaria x ananassa HOM05D018381 ORTHO05D004477 1.4e-06 57.0 156 34.6
FAN08G1425 Fragaria x ananassa HOM05D018381 ORTHO05D004477 1.4e-06 57.0 156 34.6
FAN13G0458 Fragaria x ananassa HOM05D018381 ORTHO05D004477 1.4e-06 57.0 156 34.6
Psat5g090880 Pisum sativum HOM05D008176 ORTHO05D004477 1.4e-06 57.0 139 31.7
ClCG11G014290 Citrullus lanatus HOM05D026294 ORTHO05D004477 1.9e-06 56.6 143 34.3
Migut.K01109 Erythranthe guttata HOM05D008046 ORTHO05D004477 1.9e-06 56.6 159 34.6
unitig_32.g11784 Utricularia gibba HOM05D008046 ORTHO05D004477 1.9e-06 56.6 117 36.8
Gohir.A11G204400 Gossypium hirsutum HOM05D008176 ORTHO05D004477 2.4e-06 56.2 141 36.9
Gorai.007G235100 Gossypium raimondii HOM05D008176 ORTHO05D004477 2.4e-06 56.2 141 36.9
Medtr8g089920 Medicago truncatula HOM05D008176 ORTHO05D004477 2.4e-06 56.2 144 32.6
TWI36G0888 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 3.2e-06 55.8 149 32.2
AL1G49920 Arabidopsis lyrata HOM05D010872 ORTHO05D013672 4.2e-06 55.5 141 36.9
BcaB03g13666 Brassica carinata HOM05D010872 ORTHO05D013672 4.2e-06 55.5 128 38.3
FAN18G3731 Fragaria x ananassa HOM05D018381 ORTHO05D004477 4.2e-06 55.5 156 34.0
Gohir.D05G267950 Gossypium hirsutum HOM05D008046 ORTHO05D004477 4.2e-06 55.5 145 37.9
Gohir.D11G218800 Gossypium hirsutum HOM05D008176 ORTHO05D004477 4.2e-06 55.5 140 37.1
Glyma.06G100900 Glycine max HOM05D008046 ORTHO05D004477 5.5e-06 55.1 165 30.9
Rhsim10G0167500 Rhododendron simsii HOM05D008046 ORTHO05D004477 5.5e-06 55.1 56 55.4
FvH4_5g36590 Fragaria vesca HOM05D018381 ORTHO05D004477 9.3e-06 54.3 156 33.3


User provided reference genes

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