Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30000 Nelumbo nucifera HOM05D000038 ORTHO05D000612 2.3e-56 221.9 103 100.0
Nn2g13506 Nelumbo nucifera HOM05D000038 ORTHO05D000612 6.6e-35 150.6 108 73.1
Nn2g13508 Nelumbo nucifera HOM05D000038 ORTHO05D000612 2.3e-27 125.6 107 58.9
Nn2g11264 Nelumbo nucifera HOM05D000038 ORTHO05D000612 2.9e-22 108.6 103 55.3
Ciclev10013584m.g Citrus clementina HOM05D000038 ORTHO05D000612 1.7e-19 99.4 101 48.5
Ciclev10013547m.g Citrus clementina HOM05D000038 ORTHO05D000612 5.1e-19 97.8 101 47.5
Eucgr.K03350 Eucalyptus grandis HOM05D000038 ORTHO05D000612 4.8e-17 91.3 102 44.1
Haze_20870 Corylus avellana HOM05D000038 ORTHO05D000612 6.2e-17 90.9 103 45.6
Nn7g37202 Nelumbo nucifera HOM05D000038 ORTHO05D000612 2.4e-16 89.0 102 45.1
Sabra16G0102700 Salix brachista HOM05D000038 ORTHO05D000612 3.1e-16 88.6 101 42.6
Ciclev10011053m.g Citrus clementina HOM05D000038 ORTHO05D000612 4.0e-16 88.2 101 43.6
Nn2g11266 Nelumbo nucifera HOM05D000038 ORTHO05D000612 9.0e-16 87.0 102 44.1
Duzib093G1179 Durio zibethinus HOM05D000038 ORTHO05D000612 1.2e-15 86.7 101 41.6
DCAR_028774 Daucus carota HOM05D000038 ORTHO05D000612 1.5e-15 86.3 101 43.6
Cpa.g.sc56.43 Carica papaya HOM05D000038 ORTHO05D000612 2.0e-15 85.9 103 45.6
Eucgr.K03047 Eucalyptus grandis HOM05D000038 ORTHO05D000612 2.0e-15 85.9 102 42.2
Eucgr.K03053 Eucalyptus grandis HOM05D000038 ORTHO05D000612 3.4e-15 85.1 102 42.2
FAN09G1037 Fragaria x ananassa HOM05D000038 ORTHO05D000612 5.8e-15 84.3 102 40.2
Migut.J00275 Erythranthe guttata HOM05D000038 ORTHO05D000612 7.6e-15 84.0 102 43.1
RcHm_v2.0_Chr3g0464971 Rosa chinensis HOM05D000038 ORTHO05D000612 7.6e-15 84.0 102 39.2
RcHm_v2.0_Chr3g0465011 Rosa chinensis HOM05D000038 ORTHO05D000612 7.6e-15 84.0 102 39.2
Cc06_g02170 Coffea canephora HOM05D000038 ORTHO05D000612 9.9e-15 83.6 102 44.1
FAN08G2027 Fragaria x ananassa HOM05D000038 ORTHO05D000612 9.9e-15 83.6 101 37.6
Potri.006G091400 Populus trichocarpa HOM05D000038 ORTHO05D000612 9.9e-15 83.6 101 41.6
FAN04G1065 Fragaria x ananassa HOM05D000038 ORTHO05D000612 1.3e-14 83.2 101 37.6
Thecc.05G031000 Theobroma cacao HOM05D000038 ORTHO05D000612 1.3e-14 83.2 101 40.6
TAR633G1085 Trochodendron aralioides HOM05D000038 ORTHO05D000612 2.2e-14 82.4 101 42.6
Potri.016G102600 Populus trichocarpa HOM05D000038 ORTHO05D000612 2.9e-14 82.0 101 41.6
Potri.016G102900 Populus trichocarpa HOM05D000038 ORTHO05D000612 2.9e-14 82.0 101 41.6
PGR004G0718 Punica granatum HOM05D000038 ORTHO05D000612 4.9e-14 81.3 103 44.7
PGR107G0002 Punica granatum HOM05D000038 ORTHO05D000612 4.9e-14 81.3 103 44.7
Manes.09G096900 Manihot esculenta HOM05D000038 ORTHO05D000612 8.4e-14 80.5 102 42.2
Oeu001393.1 Olea europaea HOM05D000038 ORTHO05D000612 8.4e-14 80.5 101 44.6
Potri.016G102500 Populus trichocarpa HOM05D000038 ORTHO05D000612 8.4e-14 80.5 101 40.6
RcHm_v2.0_Chr7g0195221 Rosa chinensis HOM05D000038 ORTHO05D000612 8.4e-14 80.5 101 38.6
FAN05G3114 Fragaria x ananassa HOM05D000038 ORTHO05D000612 1.1e-13 80.1 102 38.2
TAR633G2477 Trochodendron aralioides HOM05D000038 ORTHO05D000612 1.1e-13 80.1 102 44.1
MBI14_g08999_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000612 1.4e-13 79.7 100 41.0
MBI14_g08998_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000612 1.9e-13 79.3 102 45.1
Potri.016G102700 Populus trichocarpa HOM05D000038 ORTHO05D000612 1.9e-13 79.3 101 40.6
Prupe.6G263000 Prunus persica HOM05D000038 ORTHO05D000612 2.4e-13 79.0 102 39.2
DCAR_028775 Daucus carota HOM05D000038 ORTHO05D000612 3.2e-13 78.6 101 40.6
FvH4_5g04350 Fragaria vesca HOM05D000038 ORTHO05D000612 3.2e-13 78.6 101 36.6
FAN18G2705 Fragaria x ananassa HOM05D000038 ORTHO05D000612 3.2e-13 78.6 101 36.6
Gohir.D09G148833 Gossypium hirsutum HOM05D000038 ORTHO05D000612 3.2e-13 78.6 102 40.2
CiPaw.09G199800 Carya illinoinensis HOM05D000038 ORTHO05D000612 4.2e-13 78.2 102 40.2
FAN18G3761 Fragaria x ananassa HOM05D000765 ORTHO05D000612 5.4e-13 77.8 101 35.6
Nn2g11265 Nelumbo nucifera HOM05D000038 ORTHO05D000612 5.4e-13 77.8 102 40.2
RcHm_v2.0_Chr3g0464611 Rosa chinensis HOM05D000038 ORTHO05D000612 5.4e-13 77.8 102 36.3
FvH4_6g12930 Fragaria vesca HOM05D000038 ORTHO05D000612 7.1e-13 77.4 102 37.3
FAN14G4411 Fragaria x ananassa HOM05D000038 ORTHO05D000612 7.1e-13 77.4 102 37.3
Prupe.5G116500 Prunus persica HOM05D000038 ORTHO05D000612 7.1e-13 77.4 102 35.3
Nn2g13511 Nelumbo nucifera HOM05D000038 ORTHO05D000612 9.3e-13 77.0 105 41.9
Nn1g09647 Nelumbo nucifera HOM05D000038 ORTHO05D000612 1.2e-12 76.6 102 43.1
Thecc.05G031100 Theobroma cacao HOM05D000038 ORTHO05D000612 1.2e-12 76.6 101 38.6
Lsat_1_v5_gn_9_32440 Lactuca sativa HOM05D000038 ORTHO05D000612 1.6e-12 76.3 103 36.9
Nitab4.5_0000362g0110 Nicotiana tabacum HOM05D000038 ORTHO05D000612 2.7e-12 75.5 104 40.4
Lsat_1_v5_gn_9_31681 Lactuca sativa HOM05D000038 ORTHO05D000612 3.5e-12 75.1 103 36.9
Gohir.D09G148866 Gossypium hirsutum HOM05D000038 ORTHO05D000612 4.6e-12 74.7 102 38.2
Gorai.006G170000 Gossypium raimondii HOM05D000038 ORTHO05D000612 4.6e-12 74.7 102 38.2
EL10Ac3g06072 Beta vulgaris HOM05D000038 ORTHO05D000612 6.0e-12 74.3 102 38.2
CSS0008030 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000612 6.0e-12 74.3 105 41.0
Oeu001399.1 Olea europaea HOM05D000038 ORTHO05D000612 6.0e-12 74.3 101 41.6
Cc03_g12580 Coffea canephora HOM05D000038 ORTHO05D000612 7.8e-12 73.9 102 43.1
FAN08G0108 Fragaria x ananassa HOM05D000038 ORTHO05D000612 7.8e-12 73.9 101 34.7
Eucgr.K03049 Eucalyptus grandis HOM05D000038 ORTHO05D000612 1.0e-11 73.6 90 41.1
FAN18G4355 Fragaria x ananassa HOM05D000038 ORTHO05D000612 1.0e-11 73.6 101 33.7
MD04G1137000 Malus domestica HOM05D000038 ORTHO05D000612 1.0e-11 73.6 102 39.2
Solyc09g011330.3 Solanum lycopersicum HOM05D000038 ORTHO05D000612 1.0e-11 73.6 103 39.8
Sopen09g006050 Solanum pennellii HOM05D000038 ORTHO05D000612 1.7e-11 72.8 103 39.8
Oeu001844.1 Olea europaea HOM05D000038 ORTHO05D000612 2.3e-11 72.4 101 39.6
Prupe.5G116800 Prunus persica HOM05D000038 ORTHO05D000612 2.3e-11 72.4 101 34.7
TWI53G0450 Tripterygium wilfordii HOM05D000038 ORTHO05D000612 2.3e-11 72.4 103 38.8
GSVIVG01034086001 Vitis vinifera HOM05D000038 ORTHO05D000612 2.3e-11 72.4 85 41.2
Gohir.A09G153132 Gossypium hirsutum HOM05D000038 ORTHO05D000612 3.0e-11 72.0 102 37.3
Thecc.05G030900 Theobroma cacao HOM05D000038 ORTHO05D000612 3.9e-11 71.6 102 39.2
Nn2g11256 Nelumbo nucifera HOM05D000038 ORTHO05D000612 5.1e-11 71.2 102 39.2
CSS0003538 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000612 6.6e-11 70.9 105 40.0
Lsat_1_v5_gn_9_31640 Lactuca sativa HOM05D000038 ORTHO05D000612 8.7e-11 70.5 103 34.0
Os01g0668600 Oryza sativa ssp. japonica HOM05D000038 ORTHO05D000612 8.7e-11 70.5 101 36.6
FAN04G2926 Fragaria x ananassa HOM05D000038 ORTHO05D000612 1.1e-10 70.1 101 33.7
PGSC0003DMG400024259 Solanum tuberosum HOM05D000038 ORTHO05D000612 1.1e-10 70.1 103 38.8
PGSC0003DMG400024260 Solanum tuberosum HOM05D000038 ORTHO05D000612 1.1e-10 70.1 103 39.8
CAN.G229.33 Capsicum annuum HOM05D000038 ORTHO05D000612 1.5e-10 69.7 103 39.8
Zm00001eb157280 Zea mays HOM05D000038 ORTHO05D000612 2.5e-10 68.9 104 36.5
TWI53G0079 Tripterygium wilfordii HOM05D000038 ORTHO05D000612 3.3e-10 68.6 103 37.9
Lsat_1_v5_gn_9_32500 Lactuca sativa HOM05D000038 ORTHO05D000612 4.3e-10 68.2 103 36.9
TWI53G0544 Tripterygium wilfordii HOM05D000038 ORTHO05D000612 4.3e-10 68.2 102 36.3
Lsat_1_v5_gn_9_31461 Lactuca sativa HOM05D000038 ORTHO05D000612 5.6e-10 67.8 106 34.0
MBI05_g02649_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000612 9.6e-10 67.0 101 39.6
EL10Ac3g06074 Beta vulgaris HOM05D000038 ORTHO05D000612 6.2e-09 64.3 104 37.5
Actinidia13824 Actinidia chinensis HOM05D000038 ORTHO05D000612 8.1e-09 63.9 82 42.7
TWI53G0105 Tripterygium wilfordii HOM05D000038 ORTHO05D000612 1.1e-08 63.5 102 35.3
Zm00001eb359930 Zea mays HOM05D000038 ORTHO05D000612 1.1e-08 63.5 102 30.4
Lj3C962T22 Lonicera japonica HOM05D000038 ORTHO05D000612 1.4e-08 63.2 105 34.3
Os01g0669100 Oryza sativa ssp. japonica HOM05D000038 ORTHO05D000612 2.4e-08 62.4 103 32.0
MBI14_g09003_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000612 3.1e-08 62.0 88 39.8
Rhsim05G0197000 Rhododendron simsii HOM05D000038 ORTHO05D000612 4.0e-08 61.6 102 36.3
GSVIVG01034081001 Vitis vinifera HOM05D000038 ORTHO05D000612 4.0e-08 61.6 82 39.0
Os01g0670600 Oryza sativa ssp. japonica HOM05D000038 ORTHO05D000612 9.0e-08 60.5 101 33.7
DCAR_028074 Daucus carota HOM05D000038 ORTHO05D000612 1.5e-07 59.7 102 35.3
Lsat_1_v5_gn_9_33541 Lactuca sativa HOM05D000038 ORTHO05D000612 2.0e-07 59.3 85 30.6
Os01g0670100 Oryza sativa ssp. japonica HOM05D000038 ORTHO05D000612 2.6e-07 58.9 103 31.1
Os01g0885700 Oryza sativa ssp. japonica HOM05D000038 ORTHO05D000612 7.6e-07 57.4 103 28.2
TWI74G1679 Tripterygium wilfordii HOM05D000038 ORTHO05D000612 7.6e-07 57.4 103 35.9
Zm00001eb359920 Zea mays HOM05D000038 ORTHO05D000612 2.2e-06 55.8 110 28.2
Dinv37129 Davidia involucrata HOM05D000038 ORTHO05D000612 2.9e-06 55.5 67 41.8
Dinv35550 Davidia involucrata HOM05D000038 ORTHO05D000612 4.9e-06 54.7 63 42.9


User provided reference genes

Program Settings