Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 2.1e-266 921.8 458 100.0
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 8.7e-196 687.2 459 75.4
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.5e-192 676.4 454 75.1
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 8.4e-191 670.6 454 74.9
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 1.2e-189 666.8 454 74.0
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.0e-188 663.7 438 74.9
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 1.5e-187 659.8 453 73.3
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 4.3e-187 658.3 453 73.1
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 7.4e-187 657.5 453 73.1
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 1.6e-186 656.4 449 72.8
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 2.1e-186 656.0 454 72.5
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 3.7e-186 655.2 455 72.5
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 4.8e-186 654.8 454 72.7
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 8.2e-186 654.1 453 72.6
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 8.2e-186 654.1 440 73.9
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 8.2e-186 654.1 455 72.1
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 1.1e-185 653.7 455 72.5
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 1.4e-185 653.3 452 72.8
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 1.4e-185 653.3 440 73.6
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 2.6e-184 649.0 438 72.8
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 3.4e-184 648.7 450 73.1
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 4.5e-184 648.3 441 72.8
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 1.7e-183 646.4 455 70.5
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 1.7e-183 646.4 454 72.2
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 3.8e-183 645.2 424 75.0
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 1.1e-182 643.7 454 72.2
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.9e-182 642.9 424 74.5
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 1.9e-182 642.9 449 71.3
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.2e-182 641.7 454 71.1
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 7.2e-182 641.0 454 71.1
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 9.3e-182 640.6 457 70.2
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 3.6e-181 638.6 439 71.8
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 3.6e-181 638.6 455 70.5
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 4.6e-181 638.3 430 72.6
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 4.6e-181 638.3 430 72.6
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 6.1e-181 637.9 454 70.9
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 6.1e-181 637.9 455 70.5
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 1.3e-180 636.7 454 71.4
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 3.0e-180 635.6 454 70.3
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 3.9e-180 635.2 452 69.5
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 5.1e-180 634.8 441 71.4
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 1.9e-179 632.9 453 70.0
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 5.7e-179 631.3 457 69.6
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 1.6e-178 629.8 441 70.1
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 4.8e-178 628.2 442 70.6
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 1.4e-177 626.7 441 71.0
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 3.1e-177 625.5 440 71.4
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 3.1e-177 625.5 434 71.2
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 6.9e-177 624.4 446 69.7
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 9.1e-177 624.0 441 70.3
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 1.2e-176 623.6 420 72.9
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.0e-176 622.9 421 72.2
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 3.4e-176 622.1 440 70.7
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 3.4e-176 622.1 440 70.7
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 4.5e-176 621.7 423 72.6
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 4.5e-176 621.7 455 69.9
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 5.9e-176 621.3 440 70.7
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 5.9e-176 621.3 452 68.8
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 1.0e-175 620.5 440 70.5
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 1.0e-175 620.5 440 70.5
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 1.0e-175 620.5 439 71.1
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.2e-175 619.4 421 72.0
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 3.8e-175 618.6 445 69.9
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 6.5e-175 617.8 440 70.2
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 1.9e-174 616.3 422 73.0
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 1.9e-174 616.3 419 73.3
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 1.9e-174 616.3 441 70.5
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 1.9e-174 616.3 448 70.1
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 3.2e-174 615.5 448 69.9
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 4.2e-174 615.1 440 69.5
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 5.5e-174 614.8 421 71.7
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 9.4e-174 614.0 453 70.0
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 7.9e-173 610.9 441 70.1
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 1.1e-171 607.1 448 69.0
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 1.5e-171 606.7 424 71.0
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 7.4e-171 604.4 452 67.9
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 1.3e-170 603.6 443 68.8
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 6.3e-170 601.3 456 68.6
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 6.3e-170 601.3 459 68.4
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.1e-169 600.5 440 68.0
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 1.4e-169 600.1 454 67.8
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 1.4e-169 600.1 453 68.4
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 1.8e-169 599.7 418 70.8
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 2.4e-169 599.4 443 69.1
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 2.4e-169 599.4 443 69.1
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 3.1e-169 599.0 443 69.1
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 3.4e-168 595.5 452 66.4
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 4.5e-168 595.1 422 70.4
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 5.9e-168 594.7 464 65.3
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.9e-167 592.4 413 72.2
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 5.0e-167 591.7 463 66.1
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.1e-166 590.5 447 66.7
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 1.9e-166 589.7 463 65.9
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 7.2e-166 587.8 450 67.1
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 7.2e-166 587.8 426 68.8
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 9.4e-166 587.4 467 64.7
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 2.1e-165 586.3 452 66.6
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 1.0e-164 583.9 464 65.5
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 1.4e-164 583.6 418 70.3
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 5.2e-164 581.6 476 65.3
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 8.8e-164 580.9 426 67.1
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 2.6e-163 579.3 464 65.1
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 2.2e-162 576.2 423 68.6
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 1.1e-161 573.9 454 66.7
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 3.8e-159 565.5 393 70.5
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 7.2e-158 561.2 560 55.0
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 9.4e-158 560.8 440 65.5
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 3.6e-157 558.9 457 63.7
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 1.4e-156 557.0 454 63.0
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 1.8e-156 556.6 479 60.8
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 4.0e-156 555.4 455 63.5
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 2.0e-155 553.1 455 63.5
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 2.2e-154 549.7 455 63.1
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 6.3e-154 548.1 437 62.5
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 1.1e-150 537.3 402 65.4
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 1.5e-150 537.0 451 60.3
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 2.6e-147 526.2 453 62.5
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 5.4e-145 518.5 427 62.1
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 1.3e-143 513.8 452 60.8
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 5.5e-142 508.4 351 72.4
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 7.2e-142 508.1 442 58.8
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 9.5e-142 507.7 357 71.4
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 2.8e-138 496.1 423 58.6
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 7.8e-136 488.0 398 63.3
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 3.6e-133 479.2 430 57.7
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 5.7e-131 471.9 349 67.0
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 1.3e-130 470.7 397 59.7
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 2.0e-128 463.4 352 64.5
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 1.0e-127 461.1 397 59.2
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 1.8e-124 450.3 435 55.6
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.1e-121 441.0 444 53.2
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 6.6e-119 431.8 440 53.6
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 1.2e-115 421.0 321 64.5
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 6.0e-112 408.7 287 70.0
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.3e-87 327.0 323 54.5
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 1.6e-80 304.3 253 63.2
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 1.0e-79 301.6 256 61.7
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 2.5e-78 297.0 462 41.1
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 3.7e-77 293.1 201 72.1
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 6.2e-77 292.4 204 72.5
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 1.9e-65 254.2 196 66.3
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 1.1e-54 218.4 179 63.1
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 5.7e-46 189.5 165 59.4
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 1.5e-38 164.9 137 63.5
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 4.4e-38 163.3 253 42.3
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 3.2e-33 147.1 149 52.3
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 6.8e-31 139.4 148 53.4
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 9.2e-20 102.4 60 83.3
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.2e-11 75.5 56 64.3


User provided reference genes

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