Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g29785 Nelumbo nucifera HOM05D007087 ORTHO05D008968 1.4e-27 125.6 62 100.0
THA.LOC104807661 Tarenaya hassleriana HOM05D007087 ORTHO05D008968 1.5e-18 95.5 64 76.6
THA.LOC104824923 Tarenaya hassleriana HOM05D007087 ORTHO05D008968 1.5e-18 95.5 64 76.6
MBI16_g36494_MAGBIO Magnolia biondii HOM05D007087 ORTHO05D008968 4.4e-18 94.0 64 76.6
MD01G1044400 Malus domestica HOM05D007087 ORTHO05D008968 4.4e-18 94.0 65 73.8
Prupe.6G209300 Prunus persica HOM05D007087 ORTHO05D008968 4.4e-18 94.0 65 73.8
arahy.Tifrunner.gnm1.ann1.6G1T2R Arachis hypogaea HOM05D007087 ORTHO05D008968 5.8e-18 93.6 64 75.0
arahy.Tifrunner.gnm1.ann1.NU08EI Arachis hypogaea HOM05D007087 ORTHO05D008968 5.8e-18 93.6 64 75.0
Ca_13466_v3 Cicer arietinum L. HOM05D007087 ORTHO05D008968 5.8e-18 93.6 64 75.0
Ciclev10027006m.g Citrus clementina HOM05D007087 ORTHO05D008968 5.8e-18 93.6 64 76.6
Glyma.01G020200 Glycine max HOM05D007087 ORTHO05D008968 5.8e-18 93.6 64 75.0
Lj2g0010143 Lotus japonicus HOM05D007087 ORTHO05D008968 5.8e-18 93.6 64 75.0
Lalb_Chr09g0325791 Lupinus albus HOM05D007087 ORTHO05D008968 5.8e-18 93.6 64 75.0
Medtr5g030935 Medicago truncatula HOM05D007087 ORTHO05D008968 5.8e-18 93.6 64 75.0
Phvul.002G143500 Phaseolus vulgaris HOM05D007087 ORTHO05D008968 5.8e-18 93.6 64 75.0
Psat2g134040 Pisum sativum HOM05D007087 ORTHO05D008968 5.8e-18 93.6 64 75.0
Actinidia16395 Actinidia chinensis HOM05D007087 ORTHO05D008968 7.5e-18 93.2 64 75.0
Actinidia22784 Actinidia chinensis HOM05D007087 ORTHO05D008968 7.5e-18 93.2 64 75.0
AL4G12190 Arabidopsis lyrata HOM05D007087 ORTHO05D008968 7.5e-18 93.2 64 75.0
AT2G22640 Arabidopsis thaliana HOM05D007087 ORTHO05D008968 7.5e-18 93.2 64 75.0
BcaB06g27810 Brassica carinata HOM05D007087 ORTHO05D008968 7.5e-18 93.2 64 75.0
Carub.0004s0180 Capsella rubella HOM05D007087 ORTHO05D008968 7.5e-18 93.2 64 75.0
Cpa.g.sc129.16 Carica papaya HOM05D007087 ORTHO05D008968 7.5e-18 93.2 64 75.0
COL.COLO4_11683 Corchorus olitorius HOM05D007087 ORTHO05D008968 7.5e-18 93.2 64 76.6
Thhalv10000402m.g Eutrema salsugineum HOM05D007087 ORTHO05D008968 7.5e-18 93.2 64 75.0
Sp4g01675 Schrenkiella parvula HOM05D007087 ORTHO05D008968 7.5e-18 93.2 64 75.0
TWI77G0839 Tripterygium wilfordii HOM05D007087 ORTHO05D008968 7.5e-18 93.2 64 76.6
AUR62005889 Chenopodium quinoa HOM05D007087 ORTHO05D008968 9.8e-18 92.8 64 73.4
Sc16g0000740 Simmondsia chinensis HOM05D007087 ORTHO05D008968 9.8e-18 92.8 64 75.0
TAR376G1208 Trochodendron aralioides HOM05D007087 ORTHO05D008968 9.8e-18 92.8 64 75.0
FvH4_1g19040 Fragaria vesca HOM05D007087 ORTHO05D008968 1.3e-17 92.4 65 73.8
FAN23G1122 Fragaria x ananassa HOM05D007087 ORTHO05D008968 1.3e-17 92.4 65 73.8
FAN26G0060 Fragaria x ananassa HOM05D007087 ORTHO05D008968 1.3e-17 92.4 65 73.8
FAN28G2302 Fragaria x ananassa HOM05D007087 ORTHO05D008968 1.3e-17 92.4 65 73.8
Oeu024989.2 Olea europaea HOM05D007087 ORTHO05D008968 1.3e-17 92.4 64 76.6
RcHm_v2.0_Chr2g0110041 Rosa chinensis HOM05D007087 ORTHO05D008968 1.3e-17 92.4 65 73.8
TPR.G37071 Trifolium pratense HOM05D007087 ORTHO05D008968 1.3e-17 92.4 64 73.4
CSS0037594 Camellia sinensis var. sinensis HOM05D007087 ORTHO05D008968 1.7e-17 92.0 64 75.0
CSS0044951 Camellia sinensis var. sinensis HOM05D007087 ORTHO05D008968 1.7e-17 92.0 64 75.0
Cfa006833 Carpinus fangiana HOM05D007087 ORTHO05D008968 1.7e-17 92.0 64 75.0
CiPaw.07G042900 Carya illinoinensis HOM05D007087 ORTHO05D008968 1.7e-17 92.0 64 75.0
Dinv27003 Davidia involucrata HOM05D007087 ORTHO05D008968 1.7e-17 92.0 64 75.0
Duzib264G0202 Durio zibethinus HOM05D007087 ORTHO05D008968 1.7e-17 92.0 64 75.0
Gohir.A11G208700 Gossypium hirsutum HOM05D007087 ORTHO05D008968 1.7e-17 92.0 64 75.0
Gohir.D11G214800 Gossypium hirsutum HOM05D007087 ORTHO05D008968 1.7e-17 92.0 64 75.0
Gorai.007G230500 Gossypium raimondii HOM05D007087 ORTHO05D008968 1.7e-17 92.0 64 75.0
Hma1.2p1_0080F.1_g042080 Hydrangea macrophylla HOM05D007087 ORTHO05D008968 1.7e-17 92.0 64 75.0
Manes.12G121500 Manihot esculenta HOM05D007087 ORTHO05D008968 1.7e-17 92.0 64 75.0
PGR102G1803 Punica granatum HOM05D007087 ORTHO05D008968 1.7e-17 92.0 64 75.0
QL06p037367 Quercus lobata HOM05D007087 ORTHO05D008968 1.7e-17 92.0 64 75.0
COL.COLO4_02760 Corchorus olitorius HOM05D007087 ORTHO05D008968 2.2e-17 91.7 47 95.7
Glyma.09G202200 Glycine max HOM05D007087 ORTHO05D008968 2.2e-17 91.7 64 73.4
Atru.chr3.1157 Acer truncatum HOM05D007087 ORTHO05D008968 2.9e-17 91.3 64 75.0
Atru.chr3.1173 Acer truncatum HOM05D007087 ORTHO05D008968 2.9e-17 91.3 64 75.0
BcaB08g35111 Brassica carinata HOM05D007087 ORTHO05D008968 2.9e-17 91.3 60 80.0
Duzib147G0219 Durio zibethinus HOM05D007087 ORTHO05D008968 2.9e-17 91.3 64 75.0
Lalb_Chr05g0216201 Lupinus albus HOM05D007087 ORTHO05D008968 2.9e-17 91.3 64 71.9
Eucgr.I00598 Eucalyptus grandis HOM05D007087 ORTHO05D008968 3.7e-17 90.9 63 74.6
Eucgr.I00599 Eucalyptus grandis HOM05D007087 ORTHO05D008968 3.7e-17 90.9 63 74.6
EL10Ac6g13306 Beta vulgaris HOM05D007087 ORTHO05D008968 4.9e-17 90.5 64 71.9
CiPaw.08G145100 Carya illinoinensis HOM05D007087 ORTHO05D008968 4.9e-17 90.5 64 73.4
ECA232G4432 Erigeron canadensis HOM05D007087 ORTHO05D008968 4.9e-17 90.5 64 73.4
HanXRQChr09g0262861 Helianthus annuus HOM05D007087 ORTHO05D008968 4.9e-17 90.5 64 73.4
Lsat_1_v5_gn_4_156341 Lactuca sativa HOM05D007087 ORTHO05D008968 4.9e-17 90.5 64 73.4
TAR625G1164 Trochodendron aralioides HOM05D007087 ORTHO05D008968 4.9e-17 90.5 64 73.4
Dinv36975 Davidia involucrata HOM05D007087 ORTHO05D008968 6.4e-17 90.1 64 73.4
HanXRQChr11g0324431 Helianthus annuus HOM05D007087 ORTHO05D008968 6.4e-17 90.1 64 73.4
TWI53G1267 Tripterygium wilfordii HOM05D007087 ORTHO05D008968 6.4e-17 90.1 64 75.0
Aa31LG7G14170 Aethionema arabicum HOM05D007087 ORTHO05D008968 8.3e-17 89.7 45 95.6
MELO3C007697.2 Cucumis melo HOM05D007087 ORTHO05D008968 1.1e-16 89.4 64 71.9
CsaV3_6G044750 Cucumis sativus L. HOM05D007087 ORTHO05D008968 1.1e-16 89.4 64 71.9
Thecc.01G084300 Theobroma cacao HOM05D007087 ORTHO05D008968 1.1e-16 89.4 64 73.4
vmacro18037 Vaccinium macrocarpon HOM05D007087 ORTHO05D008968 1.1e-16 89.4 64 73.4
ClCG01G018190 Citrullus lanatus HOM05D007087 ORTHO05D008968 1.4e-16 89.0 46 91.3
Cc07_g07910 Coffea canephora HOM05D007087 ORTHO05D008968 1.4e-16 89.0 44 97.7
Migut.L00449 Erythranthe guttata HOM05D007087 ORTHO05D008968 1.4e-16 89.0 64 71.9
ATR0800G005 Amborella trichopoda HOM05D007087 ORTHO05D008968 1.9e-16 88.6 64 71.9
BcaC02g08628 Brassica carinata HOM05D007087 ORTHO05D008968 1.9e-16 88.6 65 73.8
A04p17120 Brassica napus HOM05D007087 ORTHO05D008968 1.9e-16 88.6 65 73.8
C04p51930 Brassica napus HOM05D007087 ORTHO05D008968 1.9e-16 88.6 65 73.8
BolC4t26765H Brassica oleracea HOM05D007087 ORTHO05D008968 1.9e-16 88.6 65 73.8
BraA04t17341Z Brassica rapa HOM05D007087 ORTHO05D008968 1.9e-16 88.6 65 73.8
Aqoxy5G01405 Aquilegia oxysepala HOM05D007087 ORTHO05D008968 3.2e-16 87.8 66 72.7
Nitab4.5_0000465g0110 Nicotiana tabacum HOM05D007087 ORTHO05D008968 3.2e-16 87.8 44 95.5
Solyc03g043720.4 Solanum lycopersicum HOM05D007087 ORTHO05D008968 3.2e-16 87.8 44 95.5
Sopen03g007570 Solanum pennellii HOM05D007087 ORTHO05D008968 3.2e-16 87.8 44 95.5
PGSC0003DMG400016688 Solanum tuberosum HOM05D007087 ORTHO05D008968 3.2e-16 87.8 44 95.5
CDE01G0651 Ceratophyllum demersum HOM05D007087 ORTHO05D008968 4.1e-16 87.4 64 68.8
CAN.G11.24 Capsicum annuum HOM05D007087 ORTHO05D008968 5.4e-16 87.0 44 93.2
Peaxi162Scf00118g00061 Petunia axillaris HOM05D007087 ORTHO05D008968 5.4e-16 87.0 44 95.5
A09p57350 Brassica napus HOM05D007087 ORTHO05D008968 9.2e-16 86.3 58 75.9
BraA09t41128Z Brassica rapa HOM05D007087 ORTHO05D008968 9.2e-16 86.3 58 75.9
Sed0015245 Sechium edule HOM05D007087 ORTHO05D008968 1.2e-15 85.9 44 90.9
Hund16615 Selenicereus undatus HOM05D007087 ORTHO05D008968 6.0e-15 83.6 60 70.0
Zm00001eb259430 Zea mays HOM05D007087 ORTHO05D008968 6.6e-14 80.1 65 63.1
unitig_32.g10648 Utricularia gibba HOM05D007087 ORTHO05D008968 1.1e-13 79.3 45 80.0
PSO017G4672 Papaver somniferum HOM05D007087 ORTHO05D008968 1.9e-13 78.6 66 63.6
PSO478G0358 Papaver somniferum HOM05D007087 ORTHO05D008968 1.9e-13 78.6 66 63.6
Potri.014G010000 Populus trichocarpa HOM05D007087 ORTHO05D008968 1.9e-13 78.6 51 78.4
Actinidia36375 Actinidia chinensis HOM05D007087 ORTHO05D008968 3.3e-13 77.8 44 84.1
Os02g0829900 Oryza sativa ssp. japonica HOM05D007087 ORTHO05D008968 1.1e-11 72.8 46 80.4
Nitab4.5_0008656g0010 Nicotiana tabacum HOM05D007087 ORTHO05D008968 3.1e-11 71.2 35 97.1
Pp3c8_2740 Physcomitrium patens HOM05D007087 ORTHO05D008968 3.4e-10 67.8 60 56.7
Mapoly0132s0041 Marchantia polymorpha HOM05D007087 ORTHO05D008968 1.3e-09 65.9 59 54.2
AagrBONN_evm.TU.Sc2ySwM_344.2813 Anthoceros agrestis HOM05D007087 ORTHO05D008968 1.7e-09 65.5 59 52.5
Sabra14G0004400 Salix brachista HOM05D007087 ORTHO05D008968 3.7e-09 64.3 32 87.5
Sabra14G0001400 Salix brachista HOM05D007087 ORTHO05D008968 1.4e-08 62.4 34 82.4
Nitab4.5_0000465g0080 Nicotiana tabacum HOM05D007087 ORTHO05D008968 4.6e-07 57.4 33 81.8
SMO144G0170 Selaginella moellendorffii HOM05D007087 ORTHO05D008968 7.8e-07 56.6 56 48.2


User provided reference genes

Program Settings