Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g29778 Nelumbo nucifera HOM05D000089 ORTHO05D011590 3.8e-38 161.0 81 100.0
Nn2g13791 Nelumbo nucifera HOM05D000089 ORTHO05D011590 2.8e-20 101.7 90 64.4
Nn1g03740 Nelumbo nucifera HOM05D000089 ORTHO05D000104 2.6e-10 68.6 37 86.5
Manes.16G016400 Manihot esculenta HOM05D000089 ORTHO05D000104 1.7e-09 65.9 35 85.7
Potri.004G030700 Populus trichocarpa HOM05D000089 ORTHO05D000104 2.2e-09 65.5 38 76.3
CANSAT56G3768 Cannabis sativa HOM05D000089 ORTHO05D000104 2.9e-09 65.1 37 81.1
Cfa016403 Carpinus fangiana HOM05D000089 ORTHO05D000104 2.9e-09 65.1 35 85.7
Haze_06680 Corylus avellana HOM05D000089 ORTHO05D000104 2.9e-09 65.1 37 83.8
Thecc.06G207800 Theobroma cacao HOM05D000089 ORTHO05D000104 2.9e-09 65.1 46 69.6
CiPaw.09G079800 Carya illinoinensis HOM05D000089 ORTHO05D000104 4.9e-09 64.3 35 85.7
COL.COLO4_31680 Corchorus olitorius HOM05D000089 ORTHO05D000104 6.4e-09 63.9 37 81.1
QL05p077218 Quercus lobata HOM05D000089 ORTHO05D000104 6.4e-09 63.9 35 82.9
GSVIVG01006396001 Vitis vinifera HOM05D000089 ORTHO05D000104 6.4e-09 63.9 35 82.9
Potri.011G031700 Populus trichocarpa HOM05D000089 ORTHO05D000104 8.3e-09 63.5 35 80.0
TWI38G0517 Tripterygium wilfordii HOM05D000089 ORTHO05D000104 8.3e-09 63.5 46 60.9
Actinidia26957 Actinidia chinensis HOM05D000594 ORTHO05D003009 1.4e-08 62.8 43 67.4
Nn1g06935 Nelumbo nucifera HOM05D000089 ORTHO05D000104 1.4e-08 62.8 37 73.0
PGR004G2388 Punica granatum HOM05D000089 ORTHO05D000104 1.4e-08 62.8 34 88.2
TWI63G0671 Tripterygium wilfordii HOM05D000089 ORTHO05D000104 1.4e-08 62.8 45 62.2
PGSC0003DMG400005065 Solanum tuberosum HOM05D000089 ORTHO05D000104 1.9e-08 62.4 36 75.0
Duzib192G0842 Durio zibethinus HOM05D000089 ORTHO05D000104 2.4e-08 62.0 43 69.8
Gohir.A05G167300 Gossypium hirsutum HOM05D000089 ORTHO05D000104 3.2e-08 61.6 34 85.3
Gohir.D05G170300 Gossypium hirsutum HOM05D000089 ORTHO05D000104 3.2e-08 61.6 34 85.3
Gorai.009G175500 Gossypium raimondii HOM05D000089 ORTHO05D000104 3.2e-08 61.6 34 85.3
MD05G1335600 Malus domestica HOM05D000089 ORTHO05D000104 3.2e-08 61.6 37 75.7
Actinidia26761 Actinidia chinensis HOM05D000089 ORTHO05D000104 7.1e-08 60.5 34 79.4
Lj4g0022792 Lotus japonicus HOM05D000089 ORTHO05D000104 7.1e-08 60.5 43 65.1
MD10G1311100 Malus domestica HOM05D000089 ORTHO05D000104 7.1e-08 60.5 37 73.0
Peaxi162Scf00781g00211 Petunia axillaris HOM05D000089 ORTHO05D000104 7.1e-08 60.5 35 74.3
CSS0005927 Camellia sinensis var. sinensis HOM05D000089 ORTHO05D000104 9.2e-08 60.1 36 72.2
Ca_18452_v3 Cicer arietinum L. HOM05D000089 ORTHO05D000104 9.2e-08 60.1 38 68.4
Cc00_g13610 Coffea canephora HOM05D000089 ORTHO05D000104 9.2e-08 60.1 36 72.2
Dinv17851 Davidia involucrata HOM05D000089 ORTHO05D000104 9.2e-08 60.1 34 79.4
Glyma.08G062100 Glycine max HOM05D000089 ORTHO05D000104 1.2e-07 59.7 40 65.0
Atru.chr10.2045 Acer truncatum HOM05D000089 ORTHO05D000104 1.6e-07 59.3 35 77.1
Eucgr.D00858 Eucalyptus grandis HOM05D000089 ORTHO05D000104 1.6e-07 59.3 37 73.0
Glyma.08G062000 Glycine max HOM05D000089 ORTHO05D000104 1.6e-07 59.3 43 62.8
Hma1.2p1_2932F.1_g330530 Hydrangea macrophylla HOM05D000089 ORTHO05D000104 1.6e-07 59.3 34 79.4
Medtr4g092080 Medicago truncatula HOM05D000089 ORTHO05D000104 2.1e-07 58.9 45 60.0
Eucgr.D00689 Eucalyptus grandis HOM05D000089 ORTHO05D000104 2.7e-07 58.5 34 73.5
Eucgr.D00700 Eucalyptus grandis HOM05D000089 ORTHO05D000104 2.7e-07 58.5 34 73.5
Lj1C1221T14 Lonicera japonica HOM05D000089 ORTHO05D000104 2.7e-07 58.5 33 81.8
Solyc03g031470.3 Solanum lycopersicum HOM05D000089 ORTHO05D000104 2.7e-07 58.5 36 72.2
TPR.G13929 Trifolium pratense HOM05D000089 ORTHO05D000104 2.7e-07 58.5 40 62.5
vmacro03739 Vaccinium macrocarpon HOM05D000089 ORTHO05D000104 2.7e-07 58.5 55 52.7
Ciclev10017667m.g Citrus clementina HOM05D000089 ORTHO05D000104 3.5e-07 58.2 44 61.4
MBI18_g03648_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 3.5e-07 58.2 39 64.1
Phvul.002G218600 Phaseolus vulgaris HOM05D000089 ORTHO05D000104 3.5e-07 58.2 41 61.0
Rhsim13G0162700 Rhododendron simsii HOM05D000089 ORTHO05D000104 3.5e-07 58.2 34 70.6
arahy.Tifrunner.gnm1.ann1.IK60LM Arachis hypogaea HOM05D000089 ORTHO05D000104 4.6e-07 57.8 35 71.4
AUR62012576 Chenopodium quinoa HOM05D000089 ORTHO05D000104 4.6e-07 57.8 33 78.8
AUR62014624 Chenopodium quinoa HOM05D000089 ORTHO05D000104 6.0e-07 57.4 33 78.8
MBI18_g03647_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 6.0e-07 57.4 41 58.5
MBI18_g32473_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D011590 6.0e-07 57.4 61 50.8
TAR624G1391 Trochodendron aralioides HOM05D000089 ORTHO05D000104 6.0e-07 57.4 44 59.1
CSS0033195 Camellia sinensis var. sinensis HOM05D000089 ORTHO05D000104 7.8e-07 57.0 34 73.5
CSS0041663 Camellia sinensis var. sinensis HOM05D000089 ORTHO05D000104 7.8e-07 57.0 34 73.5
Lalb_Chr09g0327131 Lupinus albus HOM05D000089 ORTHO05D000104 7.8e-07 57.0 34 73.5
Nitab4.5_0005140g0020 Nicotiana tabacum HOM05D000089 ORTHO05D000104 7.8e-07 57.0 34 76.5
arahy.Tifrunner.gnm1.ann1.W8TDEC Arachis hypogaea HOM05D000089 ORTHO05D000104 1.0e-06 56.6 35 68.6
Os04g0630800 Oryza sativa ssp. japonica HOM05D000089 ORTHO05D000104 1.3e-06 56.2 37 62.2
Psat7g105640 Pisum sativum HOM05D000089 ORTHO05D000104 1.3e-06 56.2 36 69.4
FAN21G1023 Fragaria x ananassa HOM05D000089 ORTHO05D000104 1.7e-06 55.8 34 70.6
FAN25G2246 Fragaria x ananassa HOM05D000089 ORTHO05D000104 1.7e-06 55.8 34 70.6
Nitab4.5_0000900g0160 Nicotiana tabacum HOM05D000089 ORTHO05D000104 1.7e-06 55.8 31 80.6
Os04g0630400 Oryza sativa ssp. japonica HOM05D000089 ORTHO05D000104 1.7e-06 55.8 39 61.5
Sopen03g005360 Solanum pennellii HOM05D000089 ORTHO05D000104 1.7e-06 55.8 36 69.4
Zm00001eb431520 Zea mays HOM05D000089 ORTHO05D000104 1.7e-06 55.8 35 65.7
Phvul.002G218700 Phaseolus vulgaris HOM05D000089 ORTHO05D000104 2.3e-06 55.5 42 57.1
RcHm_v2.0_Chr5g0004611 Rosa chinensis HOM05D000089 ORTHO05D000104 2.3e-06 55.5 37 67.6
VMungo0251G2776 Vigna mungo HOM05D000089 ORTHO05D000104 2.3e-06 55.5 36 63.9
Os04g0630300 Oryza sativa ssp. japonica HOM05D000089 ORTHO05D000104 6.6e-06 53.9 37 59.5
Os04g0631000 Oryza sativa ssp. japonica HOM05D000089 ORTHO05D000104 6.6e-06 53.9 37 59.5
Aqoxy4G02139_Aqoxy4G02140 Aquilegia oxysepala HOM05D000089 ORTHO05D000104 8.6e-06 53.5 32 68.8
Os04g0630900 Oryza sativa ssp. japonica HOM05D000089 ORTHO05D000104 8.6e-06 53.5 34 61.8


User provided reference genes

Program Settings