Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g29750 Nelumbo nucifera HOM05D005492 ORTHO05D006911 1.8e-33 145.2 67 100.0
Dinv44895 Davidia involucrata HOM05D005492 ORTHO05D006911 9.3e-30 132.9 62 98.4
CAN.G723.31 Capsicum annuum HOM05D005492 ORTHO05D006911 1.2e-29 132.5 66 89.4
Lj1g0026792 Lotus japonicus HOM05D005492 ORTHO05D006911 1.2e-29 132.5 66 90.9
Solyc04g076890.4 Solanum lycopersicum HOM05D005492 ORTHO05D006911 1.2e-29 132.5 66 89.4
Sopen04g030660 Solanum pennellii HOM05D005492 ORTHO05D006911 1.2e-29 132.5 66 89.4
PGSC0003DMG400006380 Solanum tuberosum HOM05D005492 ORTHO05D006911 1.2e-29 132.5 66 89.4
CARHR027130 Cardamine hirsuta HOM05D005492 ORTHO05D006911 1.6e-29 132.1 66 89.4
Gohir.A05G264075 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.6e-29 132.1 66 89.4
Gohir.D05G266500 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.6e-29 132.1 66 89.4
Gorai.009G278400 Gossypium raimondii HOM05D005492 ORTHO05D006911 1.6e-29 132.1 66 89.4
Nitab4.5_0000377g0170 Nicotiana tabacum HOM05D005492 ORTHO05D006911 1.6e-29 132.1 66 90.9
Nitab4.5_0005557g0040 Nicotiana tabacum HOM05D005492 ORTHO05D006911 1.6e-29 132.1 66 90.9
FAN04G2818 Fragaria x ananassa HOM05D005492 ORTHO05D006911 2.1e-29 131.7 66 87.9
FAN08G0693 Fragaria x ananassa HOM05D005492 ORTHO05D006911 2.1e-29 131.7 66 87.9
FAN18G0360 Fragaria x ananassa HOM05D005492 ORTHO05D006911 2.1e-29 131.7 66 87.9
RcHm_v2.0_Chr7g0232851 Rosa chinensis HOM05D005492 ORTHO05D006911 2.1e-29 131.7 66 87.9
Actinidia10257 Actinidia chinensis HOM05D005492 ORTHO05D006911 2.7e-29 131.3 66 89.4
BcaC01g01601 Brassica carinata HOM05D005492 ORTHO05D006911 2.7e-29 131.3 66 89.4
BcaC01g06944 Brassica carinata HOM05D005492 ORTHO05D006911 2.7e-29 131.3 66 89.4
BcaC05g26754 Brassica carinata HOM05D005492 ORTHO05D006911 2.7e-29 131.3 66 89.4
BcaC06g35300 Brassica carinata HOM05D005492 ORTHO05D006911 2.7e-29 131.3 66 89.4
A07p11710 Brassica napus HOM05D005492 ORTHO05D006911 2.7e-29 131.3 66 89.4
A08p26210 Brassica napus HOM05D005492 ORTHO05D006911 2.7e-29 131.3 66 89.4
C03p74220 Brassica napus HOM05D005492 ORTHO05D006911 2.7e-29 131.3 66 89.4
C07p17680 Brassica napus HOM05D005492 ORTHO05D006911 2.7e-29 131.3 66 89.4
BolC3t19680H Brassica oleracea HOM05D005492 ORTHO05D006911 2.7e-29 131.3 66 89.4
BolC7t42275H Brassica oleracea HOM05D005492 ORTHO05D006911 2.7e-29 131.3 66 89.4
BraA07t28956Z Brassica rapa HOM05D005492 ORTHO05D006911 2.7e-29 131.3 66 89.4
BraA08t34572Z Brassica rapa HOM05D005492 ORTHO05D006911 2.7e-29 131.3 66 89.4
Carub.0001s2610 Capsella rubella HOM05D005492 ORTHO05D006911 2.7e-29 131.3 66 89.4
Duzib041G0066 Durio zibethinus HOM05D005492 ORTHO05D006911 2.7e-29 131.3 66 89.4
Duzib041G0144 Durio zibethinus HOM05D005492 ORTHO05D006911 2.7e-29 131.3 66 89.4
Sp1g23790 Schrenkiella parvula HOM05D005492 ORTHO05D006911 2.7e-29 131.3 66 89.4
Thecc.08G078100 Theobroma cacao HOM05D005492 ORTHO05D006911 2.7e-29 131.3 66 89.4
vmacro21373 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 2.7e-29 131.3 66 89.4
arahy.Tifrunner.gnm1.ann1.7IN1UY Arachis hypogaea HOM05D005492 ORTHO05D006911 3.5e-29 131.0 66 89.4
arahy.Tifrunner.gnm1.ann1.EMS59G Arachis hypogaea HOM05D005492 ORTHO05D006911 3.5e-29 131.0 66 89.4
MSTRG.24417 Avicennia marina HOM05D005492 ORTHO05D006911 3.5e-29 131.0 65 89.2
Dinv22020 Davidia involucrata HOM05D005492 ORTHO05D006911 3.5e-29 131.0 62 96.8
Lalb_Chr08g0242711 Lupinus albus HOM05D005492 ORTHO05D006911 3.5e-29 131.0 62 95.2
MD08G1209200 Malus domestica HOM05D005492 ORTHO05D006911 3.5e-29 131.0 66 87.9
Medtr3g111110 Medicago truncatula HOM05D005492 ORTHO05D006911 3.5e-29 131.0 66 89.4
Prupe.1G541400 Prunus persica HOM05D005492 ORTHO05D006911 3.5e-29 131.0 66 87.9
TPR.G12370 Trifolium pratense HOM05D005492 ORTHO05D006911 3.5e-29 131.0 66 89.4
VMungo1309G2191 Vigna mungo HOM05D005492 ORTHO05D006911 3.5e-29 131.0 66 89.4
Migut.N02829 Erythranthe guttata HOM05D005492 ORTHO05D006911 4.6e-29 130.6 65 87.7
Migut.O00437 Erythranthe guttata HOM05D005492 ORTHO05D006911 4.6e-29 130.6 65 87.7
Gohir.A06G029400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 4.6e-29 130.6 66 87.9
Gorai.010G031300 Gossypium raimondii HOM05D005492 ORTHO05D006911 4.6e-29 130.6 66 87.9
MD15G1393200 Malus domestica HOM05D005492 ORTHO05D006911 4.6e-29 130.6 66 86.4
Psat5g017920 Pisum sativum HOM05D005492 ORTHO05D006911 4.6e-29 130.6 66 87.9
PGR083G0175 Punica granatum HOM05D005492 ORTHO05D006911 4.6e-29 130.6 66 89.4
SGA_v2.0_scaffold28G11869 Striga asiatica HOM05D005492 ORTHO05D006911 4.6e-29 130.6 65 87.7
TAR628G0115 Trochodendron aralioides HOM05D005492 ORTHO05D006911 4.6e-29 130.6 62 96.8
GSVIVG01009242001 Vitis vinifera HOM05D005492 ORTHO05D006911 4.6e-29 130.6 62 95.2
Actinidia19266 Actinidia chinensis HOM05D005492 ORTHO05D006911 6.0e-29 130.2 62 93.5
Cfa020694 Carpinus fangiana HOM05D005492 ORTHO05D006911 6.0e-29 130.2 66 89.4
Haze_18999 Corylus avellana HOM05D005492 ORTHO05D006911 6.0e-29 130.2 66 89.4
Gohir.D06G028400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 6.0e-29 130.2 66 87.9
Oeu002945.1 Olea europaea HOM05D005492 ORTHO05D006911 6.0e-29 130.2 66 87.9
Oeu026363.1 Olea europaea HOM05D005492 ORTHO05D006911 6.0e-29 130.2 66 87.9
TWI32G1091 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 6.0e-29 130.2 66 89.4
AL1G40960 Arabidopsis lyrata HOM05D005492 ORTHO05D006911 7.8e-29 129.8 66 87.9
AT1G27530 Arabidopsis thaliana HOM05D005492 ORTHO05D006911 7.8e-29 129.8 66 87.9
CiPaw.15G151700 Carya illinoinensis HOM05D005492 ORTHO05D006911 7.8e-29 129.8 66 87.9
COL.COLO4_35339 Corchorus olitorius HOM05D005492 ORTHO05D006911 7.8e-29 129.8 66 87.9
Eucgr.F00462 Eucalyptus grandis HOM05D005492 ORTHO05D006911 7.8e-29 129.8 66 89.4
Thhalv10008910m.g Eutrema salsugineum HOM05D005492 ORTHO05D006911 7.8e-29 129.8 66 87.9
Potri.002G107600 Populus trichocarpa HOM05D005492 ORTHO05D006911 7.8e-29 129.8 66 87.9
Rhsim07G0214900 Rhododendron simsii HOM05D005492 ORTHO05D006911 7.8e-29 129.8 66 87.9
Sabra02G0084500 Salix brachista HOM05D005492 ORTHO05D006911 7.8e-29 129.8 66 87.9
CANSAT35G2015 Cannabis sativa HOM05D005492 ORTHO05D006911 1.0e-28 129.4 66 86.4
Sc02g0008380 Simmondsia chinensis HOM05D005492 ORTHO05D006911 1.0e-28 129.4 66 87.9
TWI12G1341 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 1.0e-28 129.4 66 86.4
CSS0048416 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 1.3e-28 129.0 62 95.2
Manes.18G054601 Manihot esculenta HOM05D005492 ORTHO05D006911 1.3e-28 129.0 66 86.4
PSO210G2227 Papaver somniferum HOM05D005492 ORTHO05D006911 1.3e-28 129.0 62 93.5
PSO761G0095 Papaver somniferum HOM05D005492 ORTHO05D006911 1.3e-28 129.0 62 93.5
vmacro04619 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 1.3e-28 129.0 65 86.2
Ah.00g000130 Amaranthus hybridus HOM05D005492 ORTHO05D006911 1.7e-28 128.6 62 91.9
Aqoxy5G01947 Aquilegia oxysepala HOM05D005492 ORTHO05D006911 1.7e-28 128.6 62 95.2
Ciclev10002666m.g Citrus clementina HOM05D005492 ORTHO05D006911 2.3e-28 128.3 66 86.4
CsaV3_3G048290 Cucumis sativus L. HOM05D005492 ORTHO05D006911 2.3e-28 128.3 66 86.4
Hma1.2p1_1548F.1_g290020 Hydrangea macrophylla HOM05D005492 ORTHO05D006911 2.3e-28 128.3 60 95.0
Lj4A81T75 Lonicera japonica HOM05D005492 ORTHO05D006911 2.3e-28 128.3 60 93.3
Aa31LG7G10120 Aethionema arabicum HOM05D005492 ORTHO05D006911 3.0e-28 127.9 65 86.2
CDE04G0412 Ceratophyllum demersum HOM05D005492 ORTHO05D006911 3.0e-28 127.9 62 93.5
MBI16_g26726_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 3.0e-28 127.9 62 93.5
QL12p040192 Quercus lobata HOM05D005492 ORTHO05D006911 3.0e-28 127.9 65 86.2
BcaB03g13980 Brassica carinata HOM05D005492 ORTHO05D006911 3.9e-28 127.5 66 87.9
Cc10_g08150 Coffea canephora HOM05D005492 ORTHO05D006911 3.9e-28 127.5 60 95.0
unitig_8.g4867 Utricularia gibba HOM05D002193 ORTHO05D002631 3.9e-28 127.5 62 87.1
AUR62035408 Chenopodium quinoa HOM05D005492 ORTHO05D006911 5.1e-28 127.1 59 94.9
AUR62035696 Chenopodium quinoa HOM05D005492 ORTHO05D006911 5.1e-28 127.1 59 94.9
Ca_15548_v3 Cicer arietinum L. HOM05D005492 ORTHO05D006911 5.1e-28 127.1 66 87.9
Glyma.04G089600 Glycine max HOM05D005492 ORTHO05D006911 5.1e-28 127.1 63 88.9
Glyma.06G091400 Glycine max HOM05D005492 ORTHO05D006911 5.1e-28 127.1 63 88.9
THA.LOC104800327 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 5.1e-28 127.1 66 86.4
Cpa.g.sc160.3 Carica papaya HOM05D005492 ORTHO05D006911 8.7e-28 126.3 66 84.8
ClCG11G014860 Citrullus lanatus HOM05D005492 ORTHO05D006911 8.7e-28 126.3 66 84.8
Duzib116G0911 Durio zibethinus HOM05D005492 ORTHO05D006911 8.7e-28 126.3 68 86.8
HanXRQChr01g0001771 Helianthus annuus HOM05D005492 ORTHO05D006911 1.9e-27 125.2 62 91.9
Zm00001eb010950 Zea mays HOM05D005492 ORTHO05D006911 1.9e-27 125.2 61 88.5
Os10g0205200 Oryza sativa ssp. japonica HOM05D005492 ORTHO05D006911 2.5e-27 124.8 61 88.5
HPP92_010753 Vanilla planifolia HOM05D005492 ORTHO05D006911 3.3e-27 124.4 66 84.8
Lsat_1_v5_gn_9_81101 Lactuca sativa HOM05D005492 ORTHO05D006911 7.3e-27 123.2 61 88.5
SEGI_29138 Sequoiadendron giganteum HOM05D005492 ORTHO05D006911 7.3e-27 123.2 62 88.7
Atru.BG.248.p Acer truncatum HOM05D005492 ORTHO05D006911 1.3e-26 122.5 59 89.8
ATR0767G107 Amborella trichopoda HOM05D005492 ORTHO05D006911 2.8e-26 121.3 62 88.7
ECA232G4293 Erigeron canadensis HOM05D005492 ORTHO05D006911 3.6e-26 120.9 62 87.1
Sed0023469 Sechium edule HOM05D005492 ORTHO05D006911 4.8e-26 120.6 66 78.8
TAR381G0934 Trochodendron aralioides HOM05D005492 ORTHO05D006911 3.1e-25 117.9 62 93.5
Duzib093G0511 Durio zibethinus HOM05D005492 ORTHO05D006911 9.0e-25 116.3 66 78.8
MSTRG.22188 Avicennia marina HOM05D005492 ORTHO05D006911 2.0e-24 115.2 64 84.4
Mapoly0013s0107 Marchantia polymorpha HOM05D005492 ORTHO05D006911 5.8e-24 113.6 58 81.0
Pp3c16_2350 Physcomitrium patens HOM05D005492 ORTHO05D006911 4.9e-23 110.5 62 74.2
CBR_g37394 Chara braunii HOM05D005492 ORTHO05D006911 7.1e-22 106.7 60 75.0
Cre02.g142350 Chlamydomonas reinhardtii HOM05D005492 ORTHO05D006911 3.0e-20 101.3 52 82.7
PRCOL_00001807 Prasinoderma coloniale HOM05D005492 ORTHO05D006911 8.7e-20 99.8 52 78.8
Hund05232 Selenicereus undatus HOM05D005492 ORTHO05D006911 1.1e-19 99.4 131 45.0
Cfa015905 Carpinus fangiana HOM05D005492 ORTHO05D000088 1.6e-18 95.5 44 95.5
Haze_27628 Corylus avellana HOM05D005492 ORTHO05D006911 3.4e-16 87.8 58 62.1
Peaxi162Scf00626g00718 Petunia axillaris HOM05D005492 ORTHO05D006911 4.5e-16 87.4 58 75.9
Dinv07042 Davidia involucrata HOM05D005492 ORTHO05D185078 1.3e-15 85.9 43 95.3
MD16G1251000 Malus domestica HOM05D005492 ORTHO05D245813 3.8e-15 84.3 39 94.9
Nn2g14030 Nelumbo nucifera HOM05D005492 ORTHO05D006911 8.4e-15 83.2 48 77.1
MD05G1007500 Malus domestica HOM05D005492 ORTHO05D006911 1.9e-14 82.0 44 79.5
MD08G1145300 Malus domestica HOM05D005492 ORTHO05D006911 3.4e-08 61.2 42 71.4
MD00G1203800 Malus domestica HOM05D005492 ORTHO05D247194 1.9e-06 55.5 22 95.5


User provided reference genes

Program Settings