Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g29748 Nelumbo nucifera HOM05D003863 ORTHO05D004372 4.2e-63 244.6 130 100.0
Nn7g36178 Nelumbo nucifera HOM05D003863 ORTHO05D004372 6.1e-46 187.6 130 76.9
QL07p021922 Quercus lobata HOM05D003863 ORTHO05D004372 1.3e-43 179.9 129 75.2
MBI04_g13619_MAGBIO Magnolia biondii HOM05D003863 ORTHO05D004372 4.1e-42 174.9 130 69.2
GSVIVG01033339001 Vitis vinifera HOM05D003863 ORTHO05D004372 9.2e-42 173.7 130 70.8
Ciclev10005578m.g Citrus clementina HOM05D003863 ORTHO05D004372 1.2e-41 173.3 130 70.8
Manes.09G030000 Manihot esculenta HOM05D003863 ORTHO05D004372 3.9e-40 168.3 130 70.0
TAR623G1565 Trochodendron aralioides HOM05D003863 ORTHO05D004372 3.9e-40 168.3 131 69.5
Medtr7g092380 Medicago truncatula HOM05D003863 ORTHO05D004372 1.5e-39 166.4 127 69.3
Cfa016873 Carpinus fangiana HOM05D003863 ORTHO05D004372 1.9e-39 166.0 131 67.2
Actinidia09364 Actinidia chinensis HOM05D003863 ORTHO05D004372 2.5e-39 165.6 130 68.5
CsaV3_3G039120 Cucumis sativus L. HOM05D003863 ORTHO05D004372 2.5e-39 165.6 130 65.4
TAR623G1571 Trochodendron aralioides HOM05D003863 ORTHO05D004372 5.6e-39 164.5 126 69.0
Sed0023590 Sechium edule HOM05D003863 ORTHO05D004372 7.3e-39 164.1 130 68.5
TAR369G0992 Trochodendron aralioides HOM05D003863 ORTHO05D004372 7.3e-39 164.1 129 67.4
Cpa.g.sc92.2 Carica papaya HOM05D003863 ORTHO05D004372 9.5e-39 163.7 130 67.7
RcHm_v2.0_Chr3g0480921 Rosa chinensis HOM05D003863 ORTHO05D004372 9.5e-39 163.7 130 64.6
Haze_19919 Corylus avellana HOM05D003863 ORTHO05D004372 2.1e-38 162.5 131 66.4
TPR.G3845 Trifolium pratense HOM05D003863 ORTHO05D004372 2.8e-38 162.2 127 67.7
Gorai.002G229300 Gossypium raimondii HOM05D003863 ORTHO05D004372 3.6e-38 161.8 130 66.2
FvH4_5g27800 Fragaria vesca HOM05D003863 ORTHO05D004372 4.7e-38 161.4 130 63.8
Glyma.19G143100 Glycine max HOM05D003863 ORTHO05D004372 4.7e-38 161.4 127 65.4
Phvul.001G137200 Phaseolus vulgaris HOM05D003863 ORTHO05D004372 4.7e-38 161.4 119 68.9
Phvul.007G256000 Phaseolus vulgaris HOM05D003863 ORTHO05D004372 4.7e-38 161.4 131 65.6
CSS0033131 Camellia sinensis var. sinensis HOM05D003863 ORTHO05D004372 6.2e-38 161.0 124 67.7
Psat3g071000 Pisum sativum HOM05D003863 ORTHO05D004372 8.0e-38 160.6 124 69.4
Sc13g0002010 Simmondsia chinensis HOM05D003863 ORTHO05D004372 1.1e-37 160.2 130 65.4
Thecc.05G164500 Theobroma cacao HOM05D003863 ORTHO05D004372 1.1e-37 160.2 130 63.1
vmacro07872 Vaccinium macrocarpon HOM05D003863 ORTHO05D004372 1.1e-37 160.2 124 67.7
Dinv36281 Davidia involucrata HOM05D003863 ORTHO05D004372 1.4e-37 159.8 126 65.9
Sed0012159 Sechium edule HOM05D003863 ORTHO05D004372 1.4e-37 159.8 130 64.6
Aqoxy1G03653 Aquilegia oxysepala HOM05D003863 ORTHO05D004372 1.8e-37 159.5 128 67.2
arahy.Tifrunner.gnm1.ann1.C9C50Y Arachis hypogaea HOM05D003863 ORTHO05D004372 1.8e-37 159.5 130 63.8
Eucgr.A02407 Eucalyptus grandis HOM05D003863 ORTHO05D004372 1.8e-37 159.5 130 63.8
MD14G1065200 Malus domestica HOM05D003863 ORTHO05D004372 1.8e-37 159.5 130 64.6
Gohir.D01G122300 Gossypium hirsutum HOM05D003863 ORTHO05D004372 3.1e-37 158.7 129 63.6
Atru.chr1.998 Acer truncatum HOM05D003863 ORTHO05D004372 4.0e-37 158.3 130 63.8
arahy.Tifrunner.gnm1.ann1.8Q4A0R Arachis hypogaea HOM05D003863 ORTHO05D004372 4.0e-37 158.3 130 63.1
Glyma.02G179900 Glycine max HOM05D003863 ORTHO05D004372 4.0e-37 158.3 131 64.9
Psat6g089000 Pisum sativum HOM05D003863 ORTHO05D004372 4.0e-37 158.3 130 63.8
Potri.006G056400 Populus trichocarpa HOM05D003863 ORTHO05D004372 4.0e-37 158.3 129 62.8
Gorai.002G153200 Gossypium raimondii HOM05D003863 ORTHO05D004372 5.2e-37 157.9 129 63.6
VMungo1383G0990 Vigna mungo HOM05D003863 ORTHO05D004372 5.2e-37 157.9 127 66.9
Gohir.A01G195500 Gossypium hirsutum HOM05D003863 ORTHO05D004372 6.8e-37 157.5 130 63.8
TWI77G0762 Tripterygium wilfordii HOM05D003863 ORTHO05D004372 6.8e-37 157.5 130 64.6
Lalb_Chr20g0110941 Lupinus albus HOM05D003863 ORTHO05D004372 8.9e-37 157.1 132 64.4
Medtr1g052110 Medicago truncatula HOM05D003863 ORTHO05D004372 8.9e-37 157.1 130 62.3
Rhsim04G0099400 Rhododendron simsii HOM05D003863 ORTHO05D004372 8.9e-37 157.1 130 64.6
TWI74G1121 Tripterygium wilfordii HOM05D003863 ORTHO05D004372 1.2e-36 156.8 130 63.8
ECA236G3425 Erigeron canadensis HOM05D003863 ORTHO05D004372 1.5e-36 156.4 125 66.4
FAN08G1264 Fragaria x ananassa HOM05D003863 ORTHO05D004372 1.5e-36 156.4 130 62.3
Lsat_1_v5_gn_8_80000 Lactuca sativa HOM05D003863 ORTHO05D004372 2.0e-36 156.0 127 65.4
Atru.chr1.970 Acer truncatum HOM05D003863 ORTHO05D004372 2.6e-36 155.6 130 63.1
FAN04G3058 Fragaria x ananassa HOM05D003863 ORTHO05D004372 2.6e-36 155.6 127 63.0
arahy.Tifrunner.gnm1.ann1.C9GWT5 Arachis hypogaea HOM05D003863 ORTHO05D004372 4.4e-36 154.8 127 63.8
Glyma.10G094400 Glycine max HOM05D003863 ORTHO05D004372 4.4e-36 154.8 131 63.4
arahy.Tifrunner.gnm1.ann1.S1RWR6 Arachis hypogaea HOM05D003863 ORTHO05D004372 5.8e-36 154.5 127 63.8
BcaB04g21091 Brassica carinata HOM05D003863 ORTHO05D004372 5.8e-36 154.5 126 62.7
CiPaw.10G030300 Carya illinoinensis HOM05D003863 ORTHO05D004372 5.8e-36 154.5 131 65.6
CDE05G1286 Ceratophyllum demersum HOM05D003863 ORTHO05D004372 5.8e-36 154.5 131 61.1
MELO3C000540.2 Cucumis melo HOM05D003863 ORTHO05D004372 5.8e-36 154.5 123 65.9
HanXRQChr05g0132211 Helianthus annuus HOM05D003863 ORTHO05D004372 5.8e-36 154.5 127 64.6
Lalb_Chr25g0287491 Lupinus albus HOM05D003863 ORTHO05D004372 5.8e-36 154.5 128 64.8
Nn2g15421 Nelumbo nucifera HOM05D003863 ORTHO05D004372 5.8e-36 154.5 130 65.4
Nitab4.5_0011629g0010 Nicotiana tabacum HOM05D003863 ORTHO05D004372 5.8e-36 154.5 125 63.2
Sabra06G0039800 Salix brachista HOM05D000738 ORTHO05D004372 5.8e-36 154.5 129 61.2
Prupe.7G068800 Prunus persica HOM05D003863 ORTHO05D004372 7.5e-36 154.1 130 63.1
Gohir.A01G135100 Gossypium hirsutum HOM05D003863 ORTHO05D004372 9.8e-36 153.7 129 63.6
Hma1.2p1_0621F.1_g190590 Hydrangea macrophylla HOM05D003863 ORTHO05D004372 9.8e-36 153.7 130 62.3
Potri.016G051800 Populus trichocarpa HOM05D003863 ORTHO05D004372 9.8e-36 153.7 131 64.1
Sp3g10410 Schrenkiella parvula HOM05D003863 ORTHO05D004372 9.8e-36 153.7 130 62.3
THA.LOC104819593 Tarenaya hassleriana HOM05D003863 ORTHO05D004372 9.8e-36 153.7 130 61.5
CAN.G1161.3 Capsicum annuum HOM05D003863 ORTHO05D004372 1.3e-35 153.3 125 64.0
Duzib128G1292 Durio zibethinus HOM05D003863 ORTHO05D004372 1.3e-35 153.3 131 64.1
Lj1g0028028 Lotus japonicus HOM05D003863 ORTHO05D004372 1.3e-35 153.3 127 64.6
Ca_25740_v3 Cicer arietinum L. HOM05D003863 ORTHO05D004372 1.7e-35 152.9 125 62.4
COL.COLO4_30158 Corchorus olitorius HOM05D003863 ORTHO05D004372 1.7e-35 152.9 130 63.8
Sabra16G0055500 Salix brachista HOM05D000738 ORTHO05D004372 1.7e-35 152.9 119 65.5
vmacro09095 Vaccinium macrocarpon HOM05D003863 ORTHO05D004372 1.7e-35 152.9 130 63.1
AL3G23850 Arabidopsis lyrata HOM05D003863 ORTHO05D004372 2.2e-35 152.5 130 60.8
Thhalv10014343m.g Eutrema salsugineum HOM05D003863 ORTHO05D004372 2.2e-35 152.5 129 60.5
Nitab4.5_0000608g0040 Nicotiana tabacum HOM05D003863 ORTHO05D004372 2.2e-35 152.5 125 62.4
ECA247G0427 Erigeron canadensis HOM05D003863 ORTHO05D004372 2.9e-35 152.1 130 63.1
AT3G12170 Arabidopsis thaliana HOM05D003863 ORTHO05D004372 3.7e-35 151.8 130 61.5
Carub.0130s0002 Capsella rubella HOM05D003863 ORTHO05D004372 3.7e-35 151.8 130 61.5
MD12G1065200 Malus domestica HOM05D003863 ORTHO05D004372 6.4e-35 151.0 127 62.2
Duzib093G1809 Durio zibethinus HOM05D003863 ORTHO05D004372 8.3e-35 150.6 130 61.5
CARHR086750 Cardamine hirsuta HOM05D003863 ORTHO05D004372 1.4e-34 149.8 130 61.5
TPR.G22785 Trifolium pratense HOM05D003863 ORTHO05D004372 1.4e-34 149.8 130 62.3
Oeu033773.1 Olea europaea HOM05D003863 ORTHO05D004372 1.9e-34 149.4 125 63.2
Nitab4.5_0000991g0120 Nicotiana tabacum HOM05D003863 ORTHO05D004372 2.4e-34 149.1 125 61.6
PGR004G2357 Punica granatum HOM05D003863 ORTHO05D004372 2.4e-34 149.1 131 59.5
Solyc10g079090.3 Solanum lycopersicum HOM05D003863 ORTHO05D004372 3.2e-34 148.7 125 61.6
Carub.0003s1154 Capsella rubella HOM05D003863 ORTHO05D004372 4.1e-34 148.3 130 60.0
Hma1.2p1_1995F.1_g310320 Hydrangea macrophylla HOM05D003863 ORTHO05D004372 4.1e-34 148.3 130 63.1
Lj7A597G67 Lonicera japonica HOM05D003863 ORTHO05D004372 4.1e-34 148.3 130 60.0
VMungo0720G1655 Vigna mungo HOM05D003863 ORTHO05D004372 4.1e-34 148.3 131 61.8
AUR62024384 Chenopodium quinoa HOM05D003863 ORTHO05D004372 5.4e-34 147.9 130 60.8
Aa31LG5G24190 Aethionema arabicum HOM05D003863 ORTHO05D004372 7.0e-34 147.5 130 60.0
Sopen10g029730 Solanum pennellii HOM05D003863 ORTHO05D004372 7.0e-34 147.5 125 60.8
Nitab4.5_0000452g0120 Nicotiana tabacum HOM05D003863 ORTHO05D004372 9.2e-34 147.1 125 60.0
PGSC0003DMG400008182 Solanum tuberosum HOM05D003863 ORTHO05D004372 9.2e-34 147.1 125 61.6
Migut.J01791 Erythranthe guttata HOM05D003863 ORTHO05D004372 1.6e-33 146.4 125 60.0
Carub.0006s0583 Capsella rubella HOM05D003863 ORTHO05D004372 2.1e-33 146.0 131 60.3
Lsat_1_v5_gn_9_27640 Lactuca sativa HOM05D003863 ORTHO05D004372 3.5e-33 145.2 132 59.8
Hund19171 Selenicereus undatus HOM05D003863 ORTHO05D004372 3.5e-33 145.2 130 61.5
AL6G17060 Arabidopsis lyrata HOM05D003863 ORTHO05D004372 6.0e-33 144.4 132 58.3
A05p37120 Brassica napus HOM05D007406 ORTHO05D004372 1.0e-32 143.7 121 59.5
Thhalv10021344m.g Eutrema salsugineum HOM05D003863 ORTHO05D004372 1.0e-32 143.7 130 58.5
unitig_736.g22293 Utricularia gibba HOM05D003863 ORTHO05D004372 1.0e-32 143.7 125 57.6
C01p53120 Brassica napus HOM05D003863 ORTHO05D004372 1.3e-32 143.3 129 58.9
SGA_v2.0_scaffold69G23092 Striga asiatica HOM05D003863 ORTHO05D004372 1.7e-32 142.9 125 59.2
THA.LOC104807339 Tarenaya hassleriana HOM05D003863 ORTHO05D004372 1.7e-32 142.9 124 59.7
BcaC09g48222 Brassica carinata HOM05D003863 ORTHO05D004372 2.3e-32 142.5 129 58.9
BolC1t05258H Brassica oleracea HOM05D003863 ORTHO05D004372 2.3e-32 142.5 129 58.9
C05p55550 Brassica napus HOM05D007406 ORTHO05D004372 3.9e-32 141.7 121 59.5
SGA_v2.0_scaffold105G30458 Striga asiatica HOM05D003863 ORTHO05D004372 5.1e-32 141.4 125 59.2
Dinv24118 Davidia involucrata HOM05D000738 ORTHO05D000675 6.6e-32 141.0 99 72.7
Actinidia38567 Actinidia chinensis HOM05D004736 ORTHO05D006424 1.1e-31 140.2 118 63.6
DCAR_017002 Daucus carota HOM05D003863 ORTHO05D004372 1.1e-31 140.2 129 60.5
Rhsim03G0011600 Rhododendron simsii HOM05D003863 ORTHO05D004372 1.1e-31 140.2 130 60.0
HPP92_027547 Vanilla planifolia HOM05D003863 ORTHO05D004372 1.5e-31 139.8 125 57.6
AT5G06910 Arabidopsis thaliana HOM05D003863 ORTHO05D004372 1.9e-31 139.4 134 56.7
Lj5g0011357 Lotus japonicus HOM05D003863 ORTHO05D004372 1.9e-31 139.4 126 58.7
BcaC05g29275 Brassica carinata HOM05D003863 ORTHO05D004372 2.5e-31 139.0 121 58.7
BolC5t34225H Brassica oleracea HOM05D003863 ORTHO05D004372 2.5e-31 139.0 121 58.7
CSS0001798 Camellia sinensis var. sinensis HOM05D003863 ORTHO05D004372 3.3e-31 138.7 131 60.3
COL.COLO4_28711 Corchorus olitorius HOM05D003863 ORTHO05D004372 3.3e-31 138.7 150 54.0
CARHR206240 Cardamine hirsuta HOM05D003863 ORTHO05D004372 9.5e-31 137.1 130 55.4
AUR62025971 Chenopodium quinoa HOM05D003863 ORTHO05D004372 1.6e-30 136.3 107 64.5
Peaxi162Scf00003g04127 Petunia axillaris HOM05D003863 ORTHO05D004372 1.6e-30 136.3 125 58.4
HanXRQChr14g0439201 Helianthus annuus HOM05D003863 ORTHO05D004372 2.1e-30 136.0 115 63.5
Os02g0195800 Oryza sativa ssp. japonica HOM05D003863 ORTHO05D004372 2.1e-30 136.0 128 57.0
ClCG10G017290 Citrullus lanatus HOM05D003863 ORTHO05D004372 3.6e-30 135.2 207 43.0
Zm00001eb236340 Zea mays HOM05D003863 ORTHO05D004372 4.7e-30 134.8 126 54.8
DCAR_013574 Daucus carota HOM05D000738 ORTHO05D000675 6.2e-30 134.4 120 59.2
HPP92_003009 Vanilla planifolia HOM05D003863 ORTHO05D004372 4.0e-29 131.7 134 53.7
Cc06_g16500 Coffea canephora HOM05D003863 ORTHO05D004372 5.2e-29 131.3 128 56.2
Eucgr.D01662 Eucalyptus grandis HOM05D003863 ORTHO05D004372 9.9e-28 127.1 118 60.2
Eucgr.D00166 Eucalyptus grandis HOM05D003863 ORTHO05D004372 1.7e-27 126.3 118 60.2
unitig_899.g15083 Utricularia gibba HOM05D003863 ORTHO05D004372 4.9e-27 124.8 106 57.5
Eucgr.H04357 Eucalyptus grandis HOM05D003863 ORTHO05D004372 2.4e-26 122.5 118 58.5
PSO339G0957 Papaver somniferum HOM05D003863 ORTHO05D004372 6.0e-25 117.9 133 51.9
Actinidia17250 Actinidia chinensis HOM05D003863 ORTHO05D004372 2.3e-24 115.9 90 66.7
HanXRQChr15g0491301 Helianthus annuus HOM05D003863 ORTHO05D004372 1.5e-23 113.2 129 47.3
MSTRG.10828 Avicennia marina HOM05D003863 ORTHO05D004372 3.3e-23 112.1 117 54.7
Zm00001eb139200 Zea mays HOM05D003863 ORTHO05D004372 7.3e-23 110.9 92 58.7
Zm00001eb205970 Zea mays HOM05D003863 ORTHO05D004372 6.2e-22 107.8 91 58.2
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 6.2e-22 107.8 89 58.4
Gohir.D01G185900 Gossypium hirsutum HOM05D003863 ORTHO05D004372 8.1e-22 107.5 75 69.3
PSO384G3404 Papaver somniferum HOM05D003863 ORTHO05D004372 1.4e-21 106.7 133 48.9
Nn4g24599 Nelumbo nucifera HOM05D003863 ORTHO05D004372 3.1e-21 105.5 65 78.5
SEGI_03407 Sequoiadendron giganteum HOM05D003863 ORTHO05D004372 6.8e-21 104.4 130 45.4
Aa31sc947G20 Aethionema arabicum HOM05D003863 ORTHO05D004372 4.9e-19 98.2 84 57.1
MSTRG.26104 Avicennia marina HOM05D003863 ORTHO05D004372 4.9e-19 98.2 62 71.0
Lj4C258T4 Lonicera japonica HOM05D003863 ORTHO05D004372 1.9e-18 96.3 129 45.7
Eucgr.G00005 Eucalyptus grandis HOM05D003863 ORTHO05D004372 7.8e-17 90.9 130 43.8
EL10Ac3g06991 Beta vulgaris HOM05D003863 ORTHO05D004372 1.7e-16 89.7 131 45.8
SMO140G0044 Selaginella moellendorffii HOM05D003863 ORTHO05D004372 1.7e-16 89.7 131 39.7
ATR0912G002 Amborella trichopoda HOM05D003863 ORTHO05D004372 2.3e-16 89.4 102 52.0
Hma1.2p1_0247F.1_g101930 Hydrangea macrophylla HOM05D003863 ORTHO05D004372 2.3e-16 89.4 57 71.9
AagrBONN_evm.TU.Sc2ySwM_117.632 Anthoceros agrestis HOM05D003863 ORTHO05D004372 3.6e-14 82.0 123 42.3
Pp3c11_26050 Physcomitrium patens HOM05D003863 ORTHO05D004372 3.1e-13 79.0 126 39.7
Mapoly0005s0205 Marchantia polymorpha HOM05D003863 ORTHO05D004372 3.4e-12 75.5 138 36.2
Aa31sc352G20 Aethionema arabicum HOM05D003863 ORTHO05D004372 4.2e-10 68.6 100 43.0
CBR_g31684 Chara braunii HOM05D003863 ORTHO05D004372 2.1e-09 66.2 153 32.7
CBR_g50357 Chara braunii HOM05D003863 ORTHO05D004372 4.6e-09 65.1 154 34.4
Dinv18093 Davidia involucrata HOM05D003863 ORTHO05D004372 6.6e-08 61.2 67 55.2
Cre09.g389550 Chlamydomonas reinhardtii HOM05D003863 ORTHO05D004372 5.6e-07 58.2 142 31.7
MELO3C009655.2 Cucumis melo HOM05D003863 ORTHO05D004372 1.3e-06 57.0 30 83.3
Ca_10136_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009773 8.1e-06 54.3 30 73.3
Ca_30624_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009773 8.1e-06 54.3 30 73.3


User provided reference genes

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