Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g29713 Nelumbo nucifera HOM05D008028 ORTHO05D010005 4.2e-56 221.1 108 100.0
Nn1g05797 Nelumbo nucifera HOM05D008028 ORTHO05D010005 3.1e-27 125.2 103 60.2
Cfa005059 Carpinus fangiana HOM05D008028 ORTHO05D010005 3.2e-24 115.2 94 60.6
TAR628G0762 Trochodendron aralioides HOM05D008028 ORTHO05D010005 4.2e-24 114.8 93 62.4
Sabra09G0092600 Salix brachista HOM05D008028 ORTHO05D010005 9.4e-24 113.6 96 57.3
Haze_02324 Corylus avellana HOM05D008028 ORTHO05D010005 7.9e-23 110.5 94 58.5
Potri.009G120300 Populus trichocarpa HOM05D008028 ORTHO05D010005 7.9e-23 110.5 96 58.3
QL11p045140 Quercus lobata HOM05D008028 ORTHO05D010005 1.0e-22 110.2 92 62.0
QL11p045265 Quercus lobata HOM05D008028 ORTHO05D010005 1.0e-22 110.2 92 62.0
CSS0038379 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 1.4e-22 109.8 88 63.6
CSS0001295 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 1.8e-22 109.4 88 63.6
Prupe.8G090300 Prunus persica HOM05D008028 ORTHO05D010005 1.8e-22 109.4 94 58.5
Dinv42036 Davidia involucrata HOM05D008028 ORTHO05D010005 2.3e-22 109.0 92 62.0
COL.COLO4_25993 Corchorus olitorius HOM05D008028 ORTHO05D010005 5.1e-22 107.8 95 60.0
Manes.04G086850 Manihot esculenta HOM05D008028 ORTHO05D010005 6.7e-22 107.5 87 60.9
Actinidia00552 Actinidia chinensis HOM05D008028 ORTHO05D010005 8.8e-22 107.1 94 60.6
Thecc.02G080100 Theobroma cacao HOM05D008028 ORTHO05D010005 1.1e-21 106.7 95 57.9
FvH4_2g09740 Fragaria vesca HOM05D008028 ORTHO05D010005 2.0e-21 105.9 95 54.7
FAN24G2608 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.0e-21 105.9 95 54.7
FAN24G3146 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.0e-21 105.9 95 54.7
FAN15G3565 Fragaria x ananassa HOM05D008028 ORTHO05D010005 3.3e-21 105.1 95 53.7
Hma1.2p1_0066F.1_g036100 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 3.3e-21 105.1 94 62.8
RcHm_v2.0_Chr6g0266031 Rosa chinensis HOM05D008028 ORTHO05D010005 3.3e-21 105.1 92 54.3
FAN20G2021 Fragaria x ananassa HOM05D008028 ORTHO05D010005 4.4e-21 104.8 94 55.3
MD05G1060500 Malus domestica HOM05D008028 ORTHO05D010005 5.7e-21 104.4 94 58.5
CDE06G1698 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 9.7e-21 103.6 89 59.6
CANSAT11G2137 Cannabis sativa HOM05D008028 ORTHO05D010005 1.3e-20 103.2 99 54.5
FAN27G0523 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.2e-20 102.4 95 53.7
CiPaw.05G070000 Carya illinoinensis HOM05D008028 ORTHO05D010005 2.8e-20 102.1 84 64.3
MD10G1068400 Malus domestica HOM05D008028 ORTHO05D010005 3.7e-20 101.7 94 55.3
Eucgr.G01698 Eucalyptus grandis HOM05D008028 ORTHO05D010005 4.8e-20 101.3 93 57.0
Atru.chr5.3084 Acer truncatum HOM05D008028 ORTHO05D010005 6.3e-20 100.9 91 59.3
CDE03G0367 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 8.2e-20 100.5 91 56.0
Ciclev10029664m.g Citrus clementina HOM05D008028 ORTHO05D010005 2.6e-18 95.5 87 54.0
Sabra04G0106000 Salix brachista HOM05D000041 ORTHO05D010005 3.4e-18 95.1 90 55.6
PSO541G4922 Papaver somniferum HOM05D008028 ORTHO05D010005 5.9e-18 94.4 97 54.6
Rhsim11G0180600 Rhododendron simsii HOM05D008028 ORTHO05D010005 1.7e-17 92.8 93 55.9
GSVIVG01023830001 Vitis vinifera HOM05D008028 ORTHO05D010005 2.2e-17 92.4 90 53.3
Actinidia07487 Actinidia chinensis HOM05D008028 ORTHO05D010005 5.0e-17 91.3 87 58.6
CsaV3_7G000150 Cucumis sativus L. HOM05D008028 ORTHO05D010005 2.5e-16 89.0 86 58.1
PSO675G1135 Papaver somniferum HOM05D008028 ORTHO05D010005 4.2e-16 88.2 85 54.1
vmacro17456 Vaccinium macrocarpon HOM05D008028 ORTHO05D010005 4.2e-16 88.2 94 53.2
Sed0023664 Sechium edule HOM05D008028 ORTHO05D010005 4.7e-15 84.7 81 56.8
Manes.11G091000 Manihot esculenta HOM05D008028 ORTHO05D010005 8.0e-15 84.0 84 54.8
arahy.Tifrunner.gnm1.ann1.JRR1U5 Arachis hypogaea HOM05D008028 ORTHO05D010005 1.8e-14 82.8 88 52.3
CDE06G2835 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 3.0e-14 82.0 93 50.5
ClCG02G004770 Citrullus lanatus HOM05D008028 ORTHO05D010005 5.2e-14 81.3 81 58.0
Gohir.A01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 5.2e-14 81.3 87 52.9
EL10Ac9g21688 Beta vulgaris HOM05D008028 ORTHO05D010005 8.8e-14 80.5 89 50.6
Glyma.04G009700 Glycine max HOM05D008028 ORTHO05D010005 8.8e-14 80.5 96 47.9
Glyma.06G009600 Glycine max HOM05D008028 ORTHO05D010005 8.8e-14 80.5 96 49.0
Gohir.D01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 8.8e-14 80.5 87 51.7
Gorai.002G005100 Gossypium raimondii HOM05D008028 ORTHO05D010005 8.8e-14 80.5 87 51.7
Hma1.2p1_0851F.1_g228390 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 3.3e-13 78.6 61 67.2
Hma1.2p1_2203F.1_g317070 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 3.3e-13 78.6 61 67.2
Medtr3g117240 Medicago truncatula HOM05D008028 ORTHO05D010005 3.3e-13 78.6 94 46.8
BcaNung01280 Brassica carinata HOM05D008028 ORTHO05D010005 9.7e-13 77.0 112 38.4
BolC1t00039H Brassica oleracea HOM05D008028 ORTHO05D010005 9.7e-13 77.0 112 38.4
Thhalv10027119m.g Eutrema salsugineum HOM05D008028 ORTHO05D010005 9.7e-13 77.0 100 44.0
BraA01t00029Z Brassica rapa HOM05D008028 ORTHO05D010005 1.3e-12 76.6 113 38.1
Aqoxy5G01545 Aquilegia oxysepala HOM05D008028 ORTHO05D010005 2.8e-12 75.5 88 52.3
A01p00220 Brassica napus HOM05D008028 ORTHO05D010005 2.8e-12 75.5 112 37.5
Lj1g0026701 Lotus japonicus HOM05D008028 ORTHO05D010005 2.8e-12 75.5 86 51.2
Phvul.009G004900 Phaseolus vulgaris HOM05D008028 ORTHO05D010005 2.8e-12 75.5 90 48.9
Carub.0007s0098 Capsella rubella HOM05D008028 ORTHO05D010005 3.7e-12 75.1 102 42.2
C01p00330 Brassica napus HOM05D008028 ORTHO05D010005 4.8e-12 74.7 114 36.8
Sp7g36720 Schrenkiella parvula HOM05D008028 ORTHO05D010005 4.8e-12 74.7 112 39.3
AL7G11040 Arabidopsis lyrata HOM05D008028 ORTHO05D010005 1.4e-11 73.2 100 41.0
MELO3C029051.2 Cucumis melo HOM05D008028 ORTHO05D010005 4.1e-11 71.6 56 67.9
Potri.004G158800 Populus trichocarpa HOM05D008028 ORTHO05D010005 4.1e-11 71.6 56 64.3
A08p23830 Brassica napus HOM05D001347 ORTHO05D001198 2.0e-10 69.3 100 38.0
BraA08t34335Z Brassica rapa HOM05D001347 ORTHO05D001198 2.0e-10 69.3 100 38.0
TPR.G32190 Trifolium pratense HOM05D008028 ORTHO05D010005 2.6e-10 68.9 90 46.7
BcaC01g00281 Brassica carinata HOM05D001347 ORTHO05D001198 3.5e-10 68.6 100 37.0
C03p77600 Brassica napus HOM05D001347 ORTHO05D001198 4.5e-10 68.2 101 36.6
BolC3t20017H Brassica oleracea HOM05D001347 ORTHO05D001198 4.5e-10 68.2 101 36.6
arahy.Tifrunner.gnm1.ann1.04TBQJ Arachis hypogaea HOM05D008028 ORTHO05D010005 7.7e-10 67.4 105 42.9
Psat5g005320 Pisum sativum HOM05D008028 ORTHO05D010005 2.2e-09 65.9 90 45.6
AUR62011282 Chenopodium quinoa HOM05D008028 ORTHO05D010005 3.8e-09 65.1 73 52.1
BcaB03g12242 Brassica carinata HOM05D001347 ORTHO05D001198 5.0e-09 64.7 102 37.3
Os01g0739500 Oryza sativa ssp. japonica HOM05D002019 ORTHO05D010005 1.6e-07 59.7 65 43.1
Zm00001eb353580 Zea mays HOM05D002019 ORTHO05D010005 1.8e-06 56.2 53 47.2
Zm00001eb153780 Zea mays HOM05D002019 ORTHO05D010005 3.0e-06 55.5 44 56.8


User provided reference genes

Program Settings