Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g29644 Nelumbo nucifera HOM05D006278 ORTHO05D007526 7.0e-273 943.7 623 100.0
TAR376G1184 Trochodendron aralioides HOM05D006278 ORTHO05D007526 9.2e-39 166.0 391 36.8
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 3.5e-38 164.1 305 41.3
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 4.6e-38 163.7 305 41.3
Dinv39433 Davidia involucrata HOM05D006278 ORTHO05D007526 7.8e-38 162.9 271 39.9
TAR376G0700 Trochodendron aralioides HOM05D006278 ORTHO05D007526 6.6e-37 159.8 391 36.3
Atru.chr13.448 Acer truncatum HOM05D006278 ORTHO05D007526 1.8e-34 151.8 413 34.4
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 3.1e-34 151.0 273 38.1
PSO541G0933 Papaver somniferum HOM05D006278 ORTHO05D007526 6.8e-34 149.8 432 34.3
PSO675G3973 Papaver somniferum HOM05D006278 ORTHO05D007526 3.2e-31 141.0 223 41.3
TAR101G0003 Trochodendron aralioides HOM05D006278 ORTHO05D007526 4.6e-30 137.1 244 41.4
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 1.0e-29 136.0 468 30.3
Manes.05G158000 Manihot esculenta HOM05D006278 ORTHO05D007526 1.0e-29 136.0 352 32.4
Cfa008229 Carpinus fangiana HOM05D006278 ORTHO05D007526 8.6e-29 132.9 316 33.2
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 2.5e-28 131.3 430 33.3
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 5.6e-28 130.2 406 32.8
Nn2g14857 Nelumbo nucifera HOM05D006278 ORTHO05D007526 5.6e-28 130.2 404 34.4
Prupe.1G377800 Prunus persica HOM05D006278 ORTHO05D007526 1.2e-27 129.0 427 30.2
QL12p039628 Quercus lobata HOM05D006278 ORTHO05D007526 1.6e-27 128.6 342 35.7
Duzib041G0028 Durio zibethinus HOM05D006278 ORTHO05D007526 8.1e-27 126.3 342 33.6
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 8.1e-27 126.3 258 34.5
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 1.1e-26 125.9 317 31.2
Potri.005G228400 Populus trichocarpa HOM05D006278 ORTHO05D007526 1.1e-26 125.9 276 34.1
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 5.2e-26 123.6 163 46.0
TWI12G1431 Tripterygium wilfordii HOM05D006278 ORTHO05D007526 5.2e-26 123.6 350 30.0
Thecc.08G029100 Theobroma cacao HOM05D006278 ORTHO05D007526 6.8e-26 123.2 332 34.0
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 8.9e-26 122.9 416 29.8
Gohir.D06G004900 Gossypium hirsutum HOM05D006278 ORTHO05D007526 1.2e-25 122.5 343 33.8
Gorai.010G009500 Gossypium raimondii HOM05D006278 ORTHO05D007526 1.2e-25 122.5 343 33.8
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 9.9e-25 119.4 181 40.9
Gohir.A06G009400 Gossypium hirsutum HOM05D006278 ORTHO05D007526 2.2e-24 118.2 305 32.8
Sabra05G0176300 Salix brachista HOM05D006278 ORTHO05D007526 2.2e-24 118.2 308 33.4
Actinidia15341 Actinidia chinensis HOM05D006278 ORTHO05D007526 3.7e-24 117.5 413 30.3
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 6.4e-24 116.7 376 32.2
Potri.002G034700 Populus trichocarpa HOM05D006278 ORTHO05D007526 6.4e-24 116.7 326 30.7
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 5.4e-23 113.6 420 30.7
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 9.2e-23 112.8 412 28.2
Sabra02G0027900 Salix brachista HOM05D006278 ORTHO05D007526 9.2e-23 112.8 261 31.4
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 2.1e-22 111.7 141 44.7
MD08G1030100 Malus domestica HOM05D006278 ORTHO05D007526 2.1e-22 111.7 370 28.4
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 1.0e-21 109.4 237 34.6
PGSC0003DMG400003686 Solanum tuberosum HOM05D006278 ORTHO05D007526 1.0e-21 109.4 304 29.6
MD15G1025500 Malus domestica HOM05D006278 ORTHO05D007526 3.0e-21 107.8 178 39.3
Eucgr.F01578 Eucalyptus grandis HOM05D006278 ORTHO05D007526 3.9e-21 107.5 395 29.9
Medtr1g022365 Medicago truncatula HOM05D006278 ORTHO05D007526 6.6e-21 106.7 332 29.5
Solyc04g080520.1 Solanum lycopersicum HOM05D006278 ORTHO05D007526 1.9e-20 105.1 422 27.7
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 2.5e-20 104.8 345 29.9
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 2.5e-20 104.8 329 28.0
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 3.3e-20 104.4 400 28.2
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 2.1e-19 101.7 357 25.5
FAN27G0814 Fragaria x ananassa HOM05D006278 ORTHO05D007526 2.8e-19 101.3 212 37.7
FAN20G2275 Fragaria x ananassa HOM05D006278 ORTHO05D007526 3.6e-19 100.9 212 37.7
CANSAT35G1968 Cannabis sativa HOM05D006278 ORTHO05D007526 6.2e-19 100.1 418 29.7
Nitab4.5_0002224g0110 Nicotiana tabacum HOM05D006278 ORTHO05D007526 6.2e-19 100.1 423 26.7
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 3.1e-18 97.8 443 27.5
Sopen04g034110 Solanum pennellii HOM05D006278 ORTHO05D007526 3.1e-18 97.8 415 27.0
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 4.0e-18 97.4 196 34.7
Psat6g008120 Pisum sativum HOM05D006278 ORTHO05D007526 6.8e-18 96.7 423 26.7
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 1.2e-17 95.9 401 27.7
FvH4_2g39641 Fragaria vesca HOM05D006278 ORTHO05D007526 1.5e-17 95.5 207 35.7
VMungo0647G1119 Vigna mungo HOM05D006278 ORTHO05D007526 2.6e-17 94.7 311 28.6
Cpa.g.sc3.303 Carica papaya HOM05D006278 ORTHO05D007526 4.4e-17 94.0 256 29.7
CAN.G424.60 Capsicum annuum HOM05D006278 ORTHO05D007526 7.6e-17 93.2 402 26.6
Lalb_Chr24g0398921 Lupinus albus HOM05D006278 ORTHO05D007526 3.8e-16 90.9 413 28.3
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 8.4e-16 89.7 357 24.9
CANSAT25G3418 Cannabis sativa HOM05D006278 ORTHO05D007526 1.1e-15 89.4 371 28.8
RcHm_v2.0_Chr6g0301251 Rosa chinensis HOM05D006278 ORTHO05D007526 2.4e-15 88.2 174 39.1
Phvul.001G013600 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 5.4e-15 87.0 436 26.6
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 5.4e-15 87.0 416 26.4
CDE04G1483 Ceratophyllum demersum HOM05D003484 ORTHO05D004152 7.1e-15 86.7 236 31.4
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 2.1e-14 85.1 369 24.9
CDE06G2487 Ceratophyllum demersum HOM05D006278 ORTHO05D007526 2.7e-14 84.7 151 38.4
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 3.5e-14 84.3 425 27.1
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 1.0e-13 82.8 311 27.0
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 1.3e-13 82.4 160 34.4
CAN.G1226.35 Capsicum annuum HOM05D006278 ORTHO05D007526 1.7e-13 82.0 438 25.8
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 2.3e-13 81.6 284 31.7
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 1.1e-12 79.3 425 26.6
AL2G35180 Arabidopsis lyrata HOM05D006278 ORTHO05D007526 1.5e-12 79.0 135 36.3
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 1.5e-12 79.0 150 35.3
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.5e-12 79.0 182 33.5
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 1.9e-12 78.6 440 25.7
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 2.5e-12 78.2 458 26.2
BcaNung04385 Brassica carinata HOM05D006278 ORTHO05D007526 5.6e-12 77.0 181 32.6
Gorai.005G108300 Gossypium raimondii HOM05D000342 ORTHO05D000217 5.6e-12 77.0 284 31.3
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 7.3e-12 76.6 157 33.8
A07p40840 Brassica napus HOM05D006278 ORTHO05D007526 2.1e-11 75.1 160 33.1
BraA07t31626Z Brassica rapa HOM05D006278 ORTHO05D007526 2.1e-11 75.1 160 33.1
Glyma.17G251400 Glycine max HOM05D006278 ORTHO05D007526 2.8e-11 74.7 494 24.7
BcaC08g47365 Brassica carinata HOM05D006278 ORTHO05D007526 3.6e-11 74.3 170 35.3
C06p49230 Brassica napus HOM05D006278 ORTHO05D007526 4.7e-11 73.9 179 31.8
BolC6t39956H Brassica oleracea HOM05D006278 ORTHO05D007526 1.4e-10 72.4 170 34.1
Carub.0002s2208 Capsella rubella HOM05D006278 ORTHO05D007526 2.4e-10 71.6 212 29.2
Sp5g30420 Schrenkiella parvula HOM05D006278 ORTHO05D007526 2.4e-10 71.6 154 35.1
Ca_13364_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 4.0e-10 70.9 423 26.5
THA.LOC104809215 Tarenaya hassleriana HOM05D006278 ORTHO05D007526 4.0e-10 70.9 158 30.4
PGR004G0534 Punica granatum HOM05D006278 ORTHO05D007526 1.3e-08 65.9 322 25.5
CARHR068590 Cardamine hirsuta HOM05D006278 ORTHO05D007526 1.7e-08 65.5 214 31.3
Thhalv10018443m.g Eutrema salsugineum HOM05D006278 ORTHO05D007526 2.2e-08 65.1 114 36.0
Nitab4.5_0003711g0040 Nicotiana tabacum HOM05D006278 ORTHO05D007526 2.2e-08 65.1 114 37.7
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 2.9e-08 64.7 366 23.5
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 4.2e-07 60.8 413 25.7
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 4.2e-07 60.8 116 37.1
Lalb_Chr08g0245891 Lupinus albus HOM05D006278 ORTHO05D007526 5.4e-07 60.5 124 32.3
DCAR_019537 Daucus carota HOM05D006278 ORTHO05D007526 7.1e-07 60.1 428 24.5
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 7.1e-07 60.1 164 28.7
ClCG08G014920 Citrullus lanatus HOM05D006278 ORTHO05D007526 9.3e-07 59.7 154 28.6
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 1.2e-06 59.3 189 29.1
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 3.5e-06 57.8 151 28.5
DCAR_020977 Daucus carota HOM05D006278 ORTHO05D007526 4.6e-06 57.4 284 23.2


User provided reference genes

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