Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g29590 Nelumbo nucifera HOM05D000457 ORTHO05D000560 2.5e-68 261.9 129 100.0
Nn4g22619 Nelumbo nucifera HOM05D000457 ORTHO05D000560 2.3e-61 238.8 128 91.4
TAR374G0188 Trochodendron aralioides HOM05D000457 ORTHO05D000560 2.7e-33 145.6 129 56.6
GSVIVG01007662001 Vitis vinifera HOM05D000457 ORTHO05D000560 4.2e-31 138.3 129 50.4
Aqoxy5G03764 Aquilegia oxysepala HOM05D000457 ORTHO05D000560 7.2e-31 137.5 128 52.3
Rhsim11G0055800 Rhododendron simsii HOM05D000457 ORTHO05D000560 1.7e-27 126.3 129 48.8
vmacro19311 Vaccinium macrocarpon HOM05D000457 ORTHO05D000560 8.3e-27 124.0 128 47.7
Prupe.5G166400 Prunus persica HOM05D000457 ORTHO05D000560 1.1e-26 123.6 129 49.6
QL10p007271 Quercus lobata HOM05D000457 ORTHO05D000560 1.1e-26 123.6 132 47.0
Actinidia19357 Actinidia chinensis HOM05D000457 ORTHO05D000560 1.4e-26 123.2 132 47.7
CSS0000374 Camellia sinensis var. sinensis HOM05D000457 ORTHO05D000560 2.4e-26 122.5 128 48.4
FvH4_5g06130 Fragaria vesca HOM05D000457 ORTHO05D000560 4.1e-26 121.7 129 50.4
TAR629G2156 Trochodendron aralioides HOM05D000457 ORTHO05D000560 5.4e-26 121.3 129 49.6
CSS0045660 Camellia sinensis var. sinensis HOM05D000457 ORTHO05D000560 1.2e-25 120.2 128 46.9
FAN18G0992 Fragaria x ananassa HOM05D000457 ORTHO05D000560 1.2e-25 120.2 129 49.6
COL.COLO4_05566 Corchorus olitorius HOM05D000457 ORTHO05D000560 1.6e-25 119.8 142 40.8
FAN08G1962 Fragaria x ananassa HOM05D000457 ORTHO05D000560 2.7e-25 119.0 129 49.6
Potri.015G083200 Populus trichocarpa HOM05D000457 ORTHO05D000560 2.7e-25 119.0 143 44.1
FAN04G3136 Fragaria x ananassa HOM05D000457 ORTHO05D000560 3.5e-25 118.6 129 49.6
Cfa019207 Carpinus fangiana HOM05D000457 ORTHO05D000560 4.5e-25 118.2 132 45.5
TWI23G0156 Tripterygium wilfordii HOM05D000457 ORTHO05D000560 4.5e-25 118.2 143 42.0
Thecc.03G020000 Theobroma cacao HOM05D000457 ORTHO05D000560 5.9e-25 117.9 139 41.7
FAN13G1109 Fragaria x ananassa HOM05D000457 ORTHO05D000560 7.8e-25 117.5 129 48.8
Dinv38538 Davidia involucrata HOM05D000457 ORTHO05D000560 2.3e-24 115.9 128 46.9
Sabra15G0106700 Salix brachista HOM05D000457 ORTHO05D000560 5.0e-24 114.8 143 43.4
arahy.Tifrunner.gnm1.ann1.425GF3 Arachis hypogaea HOM05D000457 ORTHO05D000560 1.1e-23 113.6 131 42.7
MBI11_g05795_MAGBIO Magnolia biondii HOM05D000457 ORTHO05D000560 1.5e-23 113.2 129 45.7
TPR.G37563 Trifolium pratense HOM05D000457 ORTHO05D000560 1.5e-23 113.2 131 41.2
Ca_14271_v3 Cicer arietinum L. HOM05D000457 ORTHO05D000560 1.9e-23 112.8 131 42.0
Haze_07577 Corylus avellana HOM05D000457 ORTHO05D000560 1.9e-23 112.8 132 44.7
Atru.chr9.2562 Acer truncatum HOM05D000457 ORTHO05D000560 2.5e-23 112.5 145 40.7
Hma1.2p1_0046F.1_g027050 Hydrangea macrophylla HOM05D000457 ORTHO05D000560 2.5e-23 112.5 130 46.2
Duzib068G0925 Durio zibethinus HOM05D000457 ORTHO05D000560 4.3e-23 111.7 126 42.1
arahy.Tifrunner.gnm1.ann1.K80MA6 Arachis hypogaea HOM05D000457 ORTHO05D000560 5.6e-23 111.3 131 41.2
CiPaw.11G021300 Carya illinoinensis HOM05D000457 ORTHO05D000560 5.6e-23 111.3 132 46.2
PSO111G0031 Papaver somniferum HOM05D000457 ORTHO05D000560 1.6e-22 109.8 128 45.3
RcHm_v2.0_Chr7g0192681 Rosa chinensis HOM05D000457 ORTHO05D000560 4.7e-22 108.2 129 45.7
VMungo1215G1831 Vigna mungo HOM05D000457 ORTHO05D000560 4.7e-22 108.2 131 41.2
Potri.012G084800 Populus trichocarpa HOM05D000457 ORTHO05D000560 6.1e-22 107.8 145 42.8
Medtr4g105080 Medicago truncatula HOM05D000457 ORTHO05D000560 1.0e-21 107.1 136 42.6
PSO782G4475 Papaver somniferum HOM05D000457 ORTHO05D000560 1.0e-21 107.1 128 45.3
Phvul.003G204400 Phaseolus vulgaris HOM05D000457 ORTHO05D000560 1.0e-21 107.1 131 41.2
Glyma.17G085100 Glycine max HOM05D000457 ORTHO05D000560 1.8e-21 106.3 131 41.2
Lalb_Chr13g0297631 Lupinus albus HOM05D000457 ORTHO05D000560 2.3e-21 105.9 131 40.5
Psat0s2493g0120 Pisum sativum HOM05D000457 ORTHO05D000560 3.0e-21 105.5 131 41.2
MD06G1166400 Malus domestica HOM05D000457 ORTHO05D000560 5.2e-21 104.8 133 45.1
Cpa.g.sc110.3 Carica papaya HOM05D000457 ORTHO05D000560 6.8e-21 104.4 131 44.3
Gohir.A05G254200 Gossypium hirsutum HOM05D000457 ORTHO05D000560 8.9e-21 104.0 146 39.7
Gorai.009G267500 Gossypium raimondii HOM05D000457 ORTHO05D000560 1.5e-20 103.2 146 39.7
Oeu036511.1 Olea europaea HOM05D000457 ORTHO05D000560 2.6e-20 102.4 129 43.4
Gohir.D05G255800 Gossypium hirsutum HOM05D000457 ORTHO05D000560 4.4e-20 101.7 146 41.1
Ciclev10019061m.g Citrus clementina HOM05D000457 ORTHO05D000560 7.5e-20 100.9 142 39.4
Haze_07580 Corylus avellana HOM05D000457 ORTHO05D000560 1.3e-19 100.1 97 49.5
Lj4g0023607 Lotus japonicus HOM05D000457 ORTHO05D000560 1.3e-19 100.1 131 41.2
Manes.06G109600 Manihot esculenta HOM05D000457 ORTHO05D000560 3.7e-19 98.6 144 36.8
Sabra12G0061000 Salix brachista HOM05D000457 ORTHO05D000560 1.8e-18 96.3 144 38.9
Eucgr.K02803 Eucalyptus grandis HOM05D000457 ORTHO05D000560 4.1e-18 95.1 137 39.4
DCAR_026171 Daucus carota HOM05D000457 ORTHO05D000560 9.2e-18 94.0 128 41.4
HanXRQChr05g0155311 Helianthus annuus HOM05D000457 ORTHO05D000560 3.5e-17 92.0 127 36.2
Nitab4.5_0001793g0150 Nicotiana tabacum HOM05D000457 ORTHO05D000560 4.6e-17 91.7 129 38.0
Nitab4.5_0003703g0010 Nicotiana tabacum HOM05D000457 ORTHO05D000560 5.9e-17 91.3 129 38.0
EL10Ac5g10664 Beta vulgaris HOM05D000457 ORTHO05D000560 7.8e-17 90.9 133 36.8
SalBow5G3767 Salvia bowleyana HOM05D000457 ORTHO05D000560 2.3e-16 89.4 133 39.8
PGR044G2752 Punica granatum HOM05D000457 ORTHO05D000560 3.9e-16 88.6 150 36.0
SalBow5G1937 Salvia bowleyana HOM05D000457 ORTHO05D000560 5.0e-16 88.2 133 39.1
MELO3C022332.2 Cucumis melo HOM05D000457 ORTHO05D000560 6.6e-16 87.8 133 34.6
CsaV3_6G008030 Cucumis sativus L. HOM05D000457 ORTHO05D000560 1.1e-15 87.0 133 33.8
PGSC0003DMG400018114 Solanum tuberosum HOM05D000457 ORTHO05D000560 1.5e-15 86.7 121 35.5
AUR62008153 Chenopodium quinoa HOM05D000457 ORTHO05D000560 1.9e-15 86.3 135 37.0
Cc04_g11700 Coffea canephora HOM05D000457 ORTHO05D000560 3.3e-15 85.5 131 37.4
Lsat_1_v5_gn_5_14180 Lactuca sativa HOM05D000457 ORTHO05D000560 4.3e-15 85.1 132 34.1
Sopen03g031420 Solanum pennellii HOM05D000457 ORTHO05D000560 4.3e-15 85.1 121 34.7
ATR0824G062 Amborella trichopoda HOM05D000457 ORTHO05D000560 5.6e-15 84.7 123 39.0
ClCG06G001970 Citrullus lanatus HOM05D000457 ORTHO05D000560 5.6e-15 84.7 131 34.4
Migut.O00149 Erythranthe guttata HOM05D000457 ORTHO05D000560 5.6e-15 84.7 127 38.6
CAN.G338.24 Capsicum annuum HOM05D000457 ORTHO05D000560 9.5e-15 84.0 122 36.1
AUR62028734 Chenopodium quinoa HOM05D000457 ORTHO05D000560 9.5e-15 84.0 135 35.6
Hund02780 Selenicereus undatus HOM05D000457 ORTHO05D000560 1.2e-14 83.6 131 36.6
HPP92_021379 Vanilla planifolia HOM05D000457 ORTHO05D000560 2.1e-14 82.8 124 33.9
A09p34080 Brassica napus HOM05D000457 ORTHO05D000560 2.8e-14 82.4 138 37.0
Thhalv10012790m.g Eutrema salsugineum HOM05D000457 ORTHO05D000560 2.8e-14 82.4 107 43.0
BcaC05g27236 Brassica carinata HOM05D000457 ORTHO05D000560 4.7e-14 81.6 141 37.6
BraA09t38955Z Brassica rapa HOM05D000457 ORTHO05D000560 6.2e-14 81.3 138 37.0
C05p31510 Brassica napus HOM05D000457 ORTHO05D000560 1.4e-13 80.1 141 37.6
BolC5t31875H Brassica oleracea HOM05D000457 ORTHO05D000560 1.4e-13 80.1 141 37.6
THA.LOC104809245 Tarenaya hassleriana HOM05D000457 ORTHO05D000560 1.5e-12 76.6 150 34.0
Aa31sc137G30 Aethionema arabicum HOM05D000457 ORTHO05D000560 2.6e-12 75.9 105 38.1
Ah.02g110680 Amaranthus hybridus HOM05D000457 ORTHO05D000560 3.4e-12 75.5 126 33.3
Thecc.03G024600 Theobroma cacao HOM05D000457 ORTHO05D000560 4.4e-12 75.1 90 41.1
BcaB07g32872 Brassica carinata HOM05D000457 ORTHO05D000560 1.3e-11 73.6 105 41.0
Sed0027604 Sechium edule HOM05D000457 ORTHO05D000560 1.3e-11 73.6 139 31.7
AT5G50160 Arabidopsis thaliana HOM05D000457 ORTHO05D000560 2.2e-11 72.8 105 38.1
Carub.0008s1016 Capsella rubella HOM05D000457 ORTHO05D000560 3.7e-11 72.0 106 37.7
AL8G24170 Arabidopsis lyrata HOM05D000457 ORTHO05D000560 8.3e-11 70.9 105 38.1
Sp6g12210 Schrenkiella parvula HOM05D000457 ORTHO05D000560 1.9e-10 69.7 143 37.8
Lj9C443T18 Lonicera japonica HOM05D000457 ORTHO05D000560 4.1e-10 68.6 128 36.7
Peaxi162Scf00089g01433 Petunia axillaris HOM05D000457 ORTHO05D000560 2.7e-09 65.9 122 29.5
CARHR258480 Cardamine hirsuta HOM05D000457 ORTHO05D000560 4.6e-09 65.1 98 36.7
Duzib133G0030 Durio zibethinus HOM05D000457 ORTHO05D000560 3.0e-08 62.4 124 33.9
SGA_v2.0_scaffold90G27850 Striga asiatica HOM05D000457 ORTHO05D000560 1.9e-07 59.7 107 35.5
Psat6g196560 Pisum sativum HOM05D000457 ORTHO05D000560 4.3e-07 58.5 123 31.7
Duzib138G0744 Durio zibethinus HOM05D000457 ORTHO05D000560 5.6e-07 58.2 138 30.4
SEGI_31396 Sequoiadendron giganteum HOM05D000457 ORTHO05D000560 2.8e-06 55.8 128 27.3


User provided reference genes

Program Settings