Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 8.9e-81 303.5 150 100.0
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.1e-74 282.3 149 94.0
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.3e-43 178.7 116 75.9
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 9.6e-43 177.2 150 62.0
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 3.1e-41 172.2 116 70.7
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 9.9e-40 167.2 117 70.9
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 9.9e-40 167.2 116 69.0
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 1.4e-38 163.3 117 70.1
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 1.4e-38 163.3 116 69.0
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 3.2e-38 162.2 115 67.0
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 7.9e-37 157.5 117 68.4
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 1.0e-36 157.1 116 64.7
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 1.3e-36 156.8 116 67.2
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 1.3e-36 156.8 116 67.2
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 3.0e-36 155.6 115 68.7
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 6.7e-36 154.5 120 61.7
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 8.7e-36 154.1 119 62.2
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 8.7e-36 154.1 117 66.7
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 8.7e-36 154.1 113 69.0
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 1.1e-35 153.7 117 63.2
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 1.5e-35 153.3 116 63.8
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.9e-35 152.9 117 62.4
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.9e-35 152.9 115 62.6
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 1.9e-35 152.9 116 65.5
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 2.5e-35 152.5 116 65.5
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 3.3e-35 152.1 117 62.4
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 4.3e-35 151.8 115 62.6
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 4.3e-35 151.8 102 67.6
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 5.6e-35 151.4 121 62.0
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 5.6e-35 151.4 120 64.2
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 5.6e-35 151.4 117 65.0
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 7.4e-35 151.0 117 63.2
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 9.6e-35 150.6 119 61.3
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.8e-34 149.1 115 61.7
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.8e-34 149.1 116 62.9
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 4.8e-34 148.3 113 64.6
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.8e-34 148.3 113 64.6
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 1.1e-33 147.1 116 62.9
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 1.1e-33 147.1 156 48.1
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 1.1e-33 147.1 116 62.1
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 1.4e-33 146.7 117 61.5
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 4.0e-33 145.2 117 63.2
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 4.0e-33 145.2 117 63.2
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 4.0e-33 145.2 117 60.7
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 4.0e-33 145.2 116 57.8
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 5.3e-33 144.8 116 61.2
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 5.3e-33 144.8 117 62.4
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 9.0e-33 144.1 119 59.7
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 9.0e-33 144.1 116 62.9
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 9.0e-33 144.1 121 59.5
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 9.0e-33 144.1 116 62.1
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 1.5e-32 143.3 116 62.9
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.5e-32 143.3 120 57.5
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 2.0e-32 142.9 117 61.5
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 4.5e-32 141.7 116 64.7
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 4.5e-32 141.7 116 62.9
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 4.5e-32 141.7 116 62.9
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 7.6e-32 141.0 116 61.2
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 9.9e-32 140.6 114 58.8
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 9.9e-32 140.6 118 57.6
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 1.3e-31 140.2 116 62.1
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 1.3e-31 140.2 115 61.7
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 1.3e-31 140.2 115 61.7
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 1.3e-31 140.2 115 61.7
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 1.7e-31 139.8 116 61.2
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 1.7e-31 139.8 116 61.2
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 1.7e-31 139.8 116 61.2
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 2.2e-31 139.4 116 62.1
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 2.2e-31 139.4 116 61.2
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 2.2e-31 139.4 116 60.3
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.2e-31 139.4 119 58.0
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.2e-31 139.4 116 57.8
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 2.9e-31 139.0 116 59.5
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 4.9e-31 138.3 116 61.2
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 4.9e-31 138.3 116 56.0
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 4.2e-30 135.2 117 58.1
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 7.1e-30 134.4 124 50.8
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 1.2e-29 133.7 115 59.1
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 2.1e-29 132.9 115 57.4
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 6.0e-29 131.3 116 53.4
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 6.0e-29 131.3 117 57.3
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 7.9e-29 131.0 118 60.2
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 1.0e-28 130.6 99 62.6
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 1.8e-28 129.8 92 64.1
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 2.3e-28 129.4 130 51.5
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 2.3e-28 129.4 127 53.5
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 3.0e-28 129.0 118 53.4
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 3.9e-28 128.6 116 52.6
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 6.7e-28 127.9 113 54.9
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 6.7e-28 127.9 113 54.9
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 8.7e-28 127.5 120 58.3
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.1e-27 127.1 113 52.2
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 1.9e-27 126.3 117 53.0
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 1.9e-27 126.3 113 54.0
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 2.5e-27 125.9 98 61.2
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 5.6e-27 124.8 113 51.3
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 1.6e-26 123.2 130 50.8
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 1.6e-26 123.2 116 56.0
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 2.1e-26 122.9 113 53.1
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 4.8e-26 121.7 80 67.5
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.1e-25 120.6 115 53.9
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 1.1e-25 120.6 126 52.4
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 1.4e-25 120.2 112 55.4
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 1.8e-25 119.8 119 55.5
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 2.4e-25 119.4 126 50.8
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 3.1e-25 119.0 80 66.2
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 4.0e-25 118.6 120 55.8
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 2.0e-24 116.3 132 43.2
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 2.6e-24 115.9 79 68.4
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 3.4e-24 115.5 112 50.0
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 4.5e-24 115.2 116 50.9
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 5.8e-24 114.8 116 50.0
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 7.6e-24 114.4 113 52.2
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 7.6e-24 114.4 113 52.2
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 2.2e-23 112.8 112 50.0
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 2.2e-23 112.8 116 48.3
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 1.9e-22 109.8 116 49.1
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 2.5e-22 109.4 114 50.0
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 4.2e-22 108.6 120 46.7
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 5.5e-22 108.2 86 61.6
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 1.2e-21 107.1 76 63.2
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 2.1e-21 106.3 82 61.0
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 7.9e-21 104.4 153 40.5
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 1.3e-20 103.6 105 49.5
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 3.3e-19 99.0 114 49.1
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 4.3e-19 98.6 83 56.6
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 7.4e-19 97.8 117 44.4
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 9.7e-19 97.4 91 50.5
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 1.4e-17 93.6 117 38.5
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 3.1e-17 92.4 94 50.0
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 9.0e-17 90.9 112 42.9
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 1.2e-16 90.5 89 47.2
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 2.0e-16 89.7 80 47.5
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 9.3e-14 80.9 94 43.6
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 3.1e-09 65.9 100 37.0


User provided reference genes

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