Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 0.0e+00 1189.5 598 100.0
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 4.2e-174 615.5 544 61.9
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 1.6e-160 570.5 549 57.9
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 8.8e-148 528.1 511 56.4
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 4.5e-144 515.8 519 54.9
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 2.9e-143 513.1 549 51.9
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 1.6e-141 507.3 540 52.0
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 8.0e-141 505.0 547 51.9
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.4e-140 504.2 547 51.9
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 4.0e-140 502.7 545 51.6
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 1.2e-139 501.1 547 52.7
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 8.3e-138 495.0 549 49.7
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 1.8e-137 493.8 549 51.0
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 5.4e-137 492.3 547 52.7
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 1.2e-136 491.1 543 50.1
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 2.3e-135 486.9 542 50.7
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 4.3e-134 482.6 544 49.6
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 1.6e-133 480.7 547 49.2
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 2.1e-133 480.3 566 48.8
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 1.7e-130 470.7 545 49.7
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.7e-130 469.5 547 49.9
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 8.3e-130 468.4 547 49.9
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 4.1e-129 466.1 538 47.8
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 4.6e-128 462.6 541 49.0
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 5.9e-128 462.2 547 49.5
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.1e-126 458.0 547 49.2
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 4.7e-125 452.6 543 47.9
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 1.0e-124 451.4 543 49.5
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 1.3e-122 444.5 557 47.0
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 1.7e-122 444.1 544 48.0
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 2.2e-122 443.7 536 48.5
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 2.2e-122 443.7 540 48.7
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 4.9e-122 442.6 542 48.3
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 1.7e-119 434.1 559 47.2
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.1e-118 431.4 527 49.7
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.5e-118 431.0 548 47.3
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 1.5e-118 431.0 513 49.1
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 1.9e-118 430.6 553 48.3
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 3.3e-118 429.9 553 48.6
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 7.3e-118 428.7 546 46.5
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 7.3e-118 428.7 562 45.6
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 4.7e-117 426.0 531 46.9
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 6.2e-117 425.6 543 46.0
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 1.3e-114 417.9 558 46.8
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 6.4e-114 415.6 537 46.9
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 2.4e-113 413.7 550 47.5
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 5.4e-113 412.5 534 45.5
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 7.1e-113 412.1 540 46.3
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 4.6e-112 409.5 533 44.3
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 1.0e-111 408.3 528 47.9
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 3.0e-111 406.8 558 44.8
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 8.6e-111 405.2 553 46.3
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 2.5e-110 403.7 558 44.4
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 7.3e-110 402.1 554 45.8
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 9.5e-110 401.7 538 43.7
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.2e-109 401.4 620 41.8
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 6.2e-109 399.1 558 45.2
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.8e-108 397.5 553 42.9
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 2.3e-108 397.1 543 44.0
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.3e-108 397.1 553 42.9
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 6.8e-108 395.6 554 42.4
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 8.9e-108 395.2 557 42.7
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 2.6e-107 393.7 554 42.4
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 6.4e-106 389.0 558 41.9
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 1.1e-105 388.3 558 43.7
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 1.1e-105 388.3 549 44.3
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 2.4e-105 387.1 552 42.8
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 3.2e-105 386.7 519 46.6
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 5.4e-105 386.0 557 43.3
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 5.4e-105 386.0 544 42.3
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 7.1e-105 385.6 539 42.7
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.3e-103 381.3 541 42.1
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 6.6e-103 379.0 539 42.5
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 8.6e-103 378.6 547 42.0
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 2.5e-102 377.1 549 43.2
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.2e-101 374.8 572 42.0
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 4.7e-101 372.9 537 41.7
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 8.1e-101 372.1 478 46.2
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 9.9e-99 365.2 542 42.3
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 1.3e-98 364.8 542 42.3
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 1.1e-97 361.7 542 41.7
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 1.1e-97 361.7 547 42.0
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 9.3e-97 358.6 421 50.1
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 7.8e-96 355.5 550 41.5
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 7.8e-96 355.5 409 50.9
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 1.3e-95 354.8 494 44.5
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 3.9e-95 353.2 544 40.6
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 1.1e-92 345.1 370 52.4
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 3.1e-92 343.6 531 40.3
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 2.6e-91 340.5 543 42.0
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 3.4e-91 340.1 549 40.6
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 2.9e-90 337.0 476 42.4
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 4.9e-90 336.3 553 39.8
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 1.2e-88 331.6 554 39.9
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 1.2e-88 331.6 524 41.0
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 2.1e-88 330.9 530 38.9
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 1.5e-86 324.7 489 44.2
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 8.1e-85 318.9 562 38.1
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 6.9e-84 315.8 601 36.1
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 2.2e-82 310.8 418 45.7
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 3.8e-82 310.1 384 48.2
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 1.8e-79 301.2 574 37.1
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 5.1e-79 299.7 358 48.0
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 5.6e-78 296.2 526 39.0
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 8.2e-77 292.4 582 35.1
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 2.2e-74 284.3 353 49.0
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 4.9e-74 283.1 611 34.5
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 6.5e-74 282.7 618 35.6
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 2.5e-73 280.8 624 34.0
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 2.5e-73 280.8 624 34.0
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 2.5e-73 280.8 615 35.8
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 3.2e-73 280.4 352 45.7
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.1e-68 265.4 393 41.7
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.0e-63 248.8 412 40.3
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 8.7e-63 245.7 541 35.1
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 6.3e-61 239.6 341 41.3
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 6.3e-61 239.6 336 42.6
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 7.7e-59 232.6 337 40.7
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 2.2e-58 231.1 378 39.2
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 4.4e-54 216.9 338 39.1
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 1.4e-49 201.8 501 34.5
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.7e-45 188.3 232 47.0
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 5.3e-44 183.3 312 40.1
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 2.2e-42 177.9 214 44.4
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 9.4e-41 172.6 369 33.3
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 1.4e-36 158.7 319 34.8
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 7.7e-35 152.9 208 44.2
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 1.6e-32 145.2 355 33.2
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 1.5e-30 138.7 375 31.7
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.3e-29 135.6 191 42.9
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 4.7e-24 117.1 176 42.0
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 8.9e-23 112.8 167 41.9
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 2.0e-22 111.7 174 42.0
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.4e-22 110.9 291 30.6
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 2.4e-20 104.8 99 57.6
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 9.2e-20 102.8 305 33.1
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 5.0e-18 97.1 120 47.5
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 8.6e-18 96.3 91 58.2
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 3.3e-17 94.4 190 38.4
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 1.2e-16 92.4 131 41.2
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 3.6e-16 90.9 107 48.6
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 1.0e-15 89.4 136 39.0
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 2.3e-15 88.2 142 45.1
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 4.0e-15 87.4 140 40.0
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 1.5e-14 85.5 653 24.3
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.6e-14 84.7 90 53.3
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 9.8e-14 82.8 539 22.8
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 8.3e-13 79.7 86 50.0
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 1.4e-12 79.0 115 45.2
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 1.7e-10 72.0 146 36.3
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 2.3e-10 71.6 99 41.4
HPP92_015986 Vanilla planifolia HOM05D004086 ORTHO05D004641 3.0e-10 71.2 115 41.7
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 6.6e-10 70.1 71 56.3
Zm00001eb176250 Zea mays HOM05D004086 ORTHO05D004641 1.9e-09 68.6 145 35.9
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 1.6e-08 65.5 157 30.6
MBI08_g04811_MAGBIO Magnolia biondii HOM05D018116 ORTHO05D025787 3.6e-08 64.3 159 32.1
MBI18_g12054_MAGBIO Magnolia biondii HOM05D018116 ORTHO05D025787 1.4e-07 62.4 83 43.4
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 1.8e-07 62.0 64 45.3
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 8.9e-07 59.7 105 41.9
Os08g0268900 Oryza sativa ssp. japonica HOM05D004086 ORTHO05D004641 2.6e-06 58.2 122 33.6
SEGI_26443 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 2.6e-06 58.2 78 46.2
SEGI_40555 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 2.6e-06 58.2 78 46.2


User provided reference genes

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