Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g29530 Nelumbo nucifera HOM05D004136 ORTHO05D004817 6.9e-30 133.3 65 100.0
Nn5g29529 Nelumbo nucifera HOM05D004136 ORTHO05D004817 5.8e-29 130.2 63 100.0
CSS0034503 Camellia sinensis var. sinensis HOM05D004136 ORTHO05D004817 5.1e-25 117.1 63 85.7
Dinv23548 Davidia involucrata HOM05D004136 ORTHO05D004817 5.1e-25 117.1 63 84.1
GSVIVG01031926001 Vitis vinifera HOM05D004136 ORTHO05D004817 6.7e-25 116.7 63 84.1
Nn1g05079 Nelumbo nucifera HOM05D004136 ORTHO05D004817 8.7e-25 116.3 63 87.3
vmacro19436 Vaccinium macrocarpon HOM05D004136 ORTHO05D004817 2.5e-24 114.8 63 82.5
ECA240G4701 Erigeron canadensis HOM05D004755 ORTHO05D006137 4.3e-24 114.0 63 82.5
CDE04G1766 Ceratophyllum demersum HOM05D004136 ORTHO05D004817 5.6e-24 113.6 63 79.4
ClCG01G019370 Citrullus lanatus HOM05D004136 ORTHO05D004817 5.6e-24 113.6 63 85.7
Cfa004279 Carpinus fangiana HOM05D004136 ORTHO05D004817 7.4e-24 113.2 63 82.5
Haze_15121 Corylus avellana HOM05D004136 ORTHO05D004817 7.4e-24 113.2 63 82.5
MELO3C007812.2 Cucumis melo HOM05D004136 ORTHO05D004817 7.4e-24 113.2 63 84.1
HanXRQChr08g0216581 Helianthus annuus HOM05D004136 ORTHO05D004817 1.3e-23 112.5 63 81.0
TAR376G0015 Trochodendron aralioides HOM05D004136 ORTHO05D004817 1.3e-23 112.5 62 85.5
GSVIVG01019007001 Vitis vinifera HOM05D004136 ORTHO05D004817 1.3e-23 112.5 64 82.8
Actinidia00515 Actinidia chinensis HOM05D004136 ORTHO05D004817 2.1e-23 111.7 63 77.8
Sed0013019 Sechium edule HOM05D004136 ORTHO05D004817 2.8e-23 111.3 63 82.5
CsaV3_6G046090 Cucumis sativus L. HOM05D004136 ORTHO05D004817 3.7e-23 110.9 63 79.4
MBI16_g35701_MAGBIO Magnolia biondii HOM05D004136 ORTHO05D004817 3.7e-23 110.9 62 82.3
Potri.007G029300 Populus trichocarpa HOM05D004136 ORTHO05D004817 3.7e-23 110.9 63 74.6
Sed0010733 Sechium edule HOM05D004136 ORTHO05D004817 3.7e-23 110.9 63 84.1
Thecc.01G039800 Theobroma cacao HOM05D004136 ORTHO05D004817 3.7e-23 110.9 63 77.8
Hma1.2p1_0652F.1_g195840 Hydrangea macrophylla HOM05D004136 ORTHO05D004817 4.8e-23 110.5 63 81.0
vmacro02133 Vaccinium macrocarpon HOM05D004136 ORTHO05D004817 4.8e-23 110.5 63 82.5
Cc02_g17820 Coffea canephora HOM05D004136 ORTHO05D004817 6.2e-23 110.2 63 81.0
PGR119G1684 Punica granatum HOM05D004136 ORTHO05D004817 6.2e-23 110.2 64 75.0
Duzib187G0328 Durio zibethinus HOM05D004136 ORTHO05D004817 8.1e-23 109.8 63 77.8
Aa31LG6G13530 Aethionema arabicum HOM05D004136 ORTHO05D004817 1.1e-22 109.4 63 77.8
Gohir.A10G094600 Gossypium hirsutum HOM05D004136 ORTHO05D004817 1.1e-22 109.4 63 79.4
Gohir.D10G093300 Gossypium hirsutum HOM05D004136 ORTHO05D004817 1.1e-22 109.4 63 79.4
Gorai.011G102500 Gossypium raimondii HOM05D004136 ORTHO05D004817 1.1e-22 109.4 63 79.4
Lsat_1_v5_gn_9_109341 Lactuca sativa HOM05D004136 ORTHO05D004817 1.1e-22 109.4 63 79.4
QL06p045366 Quercus lobata HOM05D004136 ORTHO05D004817 1.4e-22 109.0 63 82.5
Manes.13G137000 Manihot esculenta HOM05D004136 ORTHO05D004817 2.4e-22 108.2 63 79.4
Aqoxy6G01036 Aquilegia oxysepala HOM05D004136 ORTHO05D004817 3.1e-22 107.8 63 81.0
CANSAT01G2667 Cannabis sativa HOM05D004136 ORTHO05D004817 4.0e-22 107.5 63 76.2
ATR0733G067 Amborella trichopoda HOM05D004136 ORTHO05D004817 5.3e-22 107.1 63 74.6
MSTRG.20103 Avicennia marina HOM05D004136 ORTHO05D004817 5.3e-22 107.1 62 79.0
CiPaw.01G034600 Carya illinoinensis HOM05D004136 ORTHO05D004817 5.3e-22 107.1 63 82.5
Phvul.002G027400 Phaseolus vulgaris HOM05D004136 ORTHO05D004817 5.3e-22 107.1 63 84.1
RcHm_v2.0_Chr2g0102181 Rosa chinensis HOM05D004136 ORTHO05D004817 5.3e-22 107.1 63 77.8
RcHm_v2.0_Chr6g0263171 Rosa chinensis HOM05D004136 ORTHO05D004817 9.0e-22 106.3 57 82.5
TAR628G0800 Trochodendron aralioides HOM05D004136 ORTHO05D004817 9.0e-22 106.3 54 90.7
BcaC01g00446 Brassica carinata HOM05D004136 ORTHO05D004817 1.2e-21 105.9 63 74.6
C03p79930 Brassica napus HOM05D004136 ORTHO05D004817 1.2e-21 105.9 63 74.6
BolC3t20246H Brassica oleracea HOM05D004136 ORTHO05D004817 1.2e-21 105.9 63 74.6
FAN23G0822 Fragaria x ananassa HOM05D004136 ORTHO05D004817 1.5e-21 105.5 63 79.4
FAN26G1434 Fragaria x ananassa HOM05D004136 ORTHO05D004817 1.5e-21 105.5 63 79.4
FAN28G1223 Fragaria x ananassa HOM05D004136 ORTHO05D004817 1.5e-21 105.5 63 79.4
Atru.chr3.535 Acer truncatum HOM05D004136 ORTHO05D004817 2.0e-21 105.1 63 74.6
Glyma.11G065100 Glycine max HOM05D004136 ORTHO05D004817 2.0e-21 105.1 63 81.0
HanXRQChr04g0127871 Helianthus annuus HOM05D004136 ORTHO05D004817 2.0e-21 105.1 63 76.2
Nitab4.5_0011188g0010 Nicotiana tabacum HOM05D004136 ORTHO05D004817 2.0e-21 105.1 63 74.6
CSS0025580 Camellia sinensis var. sinensis HOM05D004136 ORTHO05D004817 2.6e-21 104.8 53 88.7
Lj2g0019230 Lotus japonicus HOM05D004136 ORTHO05D004817 2.6e-21 104.8 62 80.6
Prupe.7G150800 Prunus persica HOM05D004136 ORTHO05D004817 2.6e-21 104.8 63 74.6
Sp7g34380 Schrenkiella parvula HOM05D004136 ORTHO05D004817 2.6e-21 104.8 63 73.0
Sc18g0004640 Simmondsia chinensis HOM05D004136 ORTHO05D004817 2.6e-21 104.8 63 73.0
arahy.Tifrunner.gnm1.ann1.65EKU6 Arachis hypogaea HOM05D004136 ORTHO05D004817 3.4e-21 104.4 63 76.2
arahy.Tifrunner.gnm1.ann1.KSUC5C Arachis hypogaea HOM05D001320 ORTHO05D006314 3.4e-21 104.4 63 76.2
Cpa.g.sc158.6 Carica papaya HOM05D004136 ORTHO05D004817 3.4e-21 104.4 63 74.6
COL.COLO4_22117 Corchorus olitorius HOM05D004136 ORTHO05D004817 3.4e-21 104.4 63 74.6
Thhalv10026250m.g Eutrema salsugineum HOM05D004136 ORTHO05D004817 3.4e-21 104.4 63 73.0
Glyma.01G177300 Glycine max HOM05D004136 ORTHO05D004817 3.4e-21 104.4 63 79.4
A08p22370 Brassica napus HOM05D004136 ORTHO05D004817 4.5e-21 104.0 63 73.0
BraA08t34194Z Brassica rapa HOM05D004136 ORTHO05D004817 4.5e-21 104.0 63 73.0
FvH4_1g13870 Fragaria vesca HOM05D004136 ORTHO05D004817 4.5e-21 104.0 63 77.8
FAN19G3158 Fragaria x ananassa HOM05D004136 ORTHO05D004817 4.5e-21 104.0 63 77.8
CARHR245070 Cardamine hirsuta HOM05D004136 ORTHO05D004817 5.8e-21 103.6 63 71.4
Nitab4.5_0001311g0020 Nicotiana tabacum HOM05D004136 ORTHO05D004817 5.8e-21 103.6 63 74.6
Rhsim11G0174000 Rhododendron simsii HOM05D004136 ORTHO05D004817 5.8e-21 103.6 63 74.6
Eucgr.I01252 Eucalyptus grandis HOM05D004136 ORTHO05D004817 7.6e-21 103.2 56 78.6
HPP92_007875 Vanilla planifolia HOM05D004136 ORTHO05D004817 7.6e-21 103.2 63 71.4
HPP92_007890 Vanilla planifolia HOM05D004136 ORTHO05D004817 7.6e-21 103.2 63 71.4
BolC7t46611H Brassica oleracea HOM05D004136 ORTHO05D004817 1.0e-20 102.8 63 73.0
Carub.0007s0360 Capsella rubella HOM05D004136 ORTHO05D004817 1.0e-20 102.8 63 71.4
VMungo1215G0182 Vigna mungo HOM05D004136 ORTHO05D004817 1.0e-20 102.8 63 77.8
Hma1.2p1_3707F.1_g337330 Hydrangea macrophylla HOM05D004136 ORTHO05D004817 1.3e-20 102.4 54 85.2
TPR.G18804 Trifolium pratense HOM05D004136 ORTHO05D004817 1.3e-20 102.4 63 77.8
Atru.chr5.2955 Acer truncatum HOM05D004136 ORTHO05D004817 1.7e-20 102.1 57 80.7
CAN.G352.59 Capsicum annuum HOM05D004136 ORTHO05D004817 1.7e-20 102.1 63 73.0
Migut.B00258 Erythranthe guttata HOM05D004136 ORTHO05D004817 1.7e-20 102.1 63 74.6
Hma1.2p1_0066F.1_g036680 Hydrangea macrophylla HOM05D004136 ORTHO05D004817 1.7e-20 102.1 52 86.5
Peaxi162Scf00089g00243 Petunia axillaris HOM05D004136 ORTHO05D004817 1.7e-20 102.1 63 73.0
THA.LOC104807547 Tarenaya hassleriana HOM05D004136 ORTHO05D004817 1.7e-20 102.1 63 69.8
BcaB03g12374 Brassica carinata HOM05D004136 ORTHO05D004817 2.2e-20 101.7 63 71.4
FvH4_2g08300 Fragaria vesca HOM05D004136 ORTHO05D004817 2.9e-20 101.3 57 80.7
Ciclev10029342m.g Citrus clementina HOM05D004136 ORTHO05D004817 3.8e-20 100.9 57 73.7
Lsat_1_v5_gn_9_109361 Lactuca sativa HOM05D004136 ORTHO05D004817 3.8e-20 100.9 65 75.4
Psat2g161160 Pisum sativum HOM05D004136 ORTHO05D004817 3.8e-20 100.9 63 77.8
Gohir.A04G117200 Gossypium hirsutum HOM05D004136 ORTHO05D004817 4.9e-20 100.5 55 78.2
Gorai.012G146300 Gossypium raimondii HOM05D004136 ORTHO05D004817 4.9e-20 100.5 55 78.2
PSO675G6408 Papaver somniferum HOM05D004136 ORTHO05D004817 4.9e-20 100.5 63 73.0
FAN15G1236 Fragaria x ananassa HOM05D004136 ORTHO05D004817 6.5e-20 100.1 57 78.9
Potri.009G113400 Populus trichocarpa HOM05D004136 ORTHO05D004817 6.5e-20 100.1 57 77.2
EL10Ac9g21751 Beta vulgaris HOM05D004136 ORTHO05D004817 8.4e-20 99.8 63 73.0
BcaNung00706 Brassica carinata HOM05D004136 ORTHO05D004817 8.4e-20 99.8 63 69.8
C01p02380 Brassica napus HOM05D004136 ORTHO05D004817 8.4e-20 99.8 63 69.8
PSO541G5216 Papaver somniferum HOM05D004136 ORTHO05D004817 8.4e-20 99.8 63 71.4
ECA236G4692 Erigeron canadensis HOM05D000001 ORTHO05D009502 1.1e-19 99.4 63 69.8
Lj5A200T57 Lonicera japonica HOM05D004136 ORTHO05D004817 1.4e-19 99.0 52 86.5
Medtr5g019720 Medicago truncatula HOM05D004136 ORTHO05D004817 1.4e-19 99.0 63 74.6
Sabra09G0086700 Salix brachista HOM05D004136 ORTHO05D004817 1.4e-19 99.0 57 77.2
Hund00289 Selenicereus undatus HOM05D004136 ORTHO05D004817 1.4e-19 99.0 63 73.0
BcaNung04434 Brassica carinata HOM05D004136 ORTHO05D004817 1.9e-19 98.6 63 68.3
FAN20G0668 Fragaria x ananassa HOM05D004136 ORTHO05D004817 1.9e-19 98.6 57 78.9
MD10G1080600 Malus domestica HOM05D004136 ORTHO05D004817 1.9e-19 98.6 57 78.9
QL11p042830 Quercus lobata HOM05D004136 ORTHO05D004817 1.9e-19 98.6 57 71.9
Cpa.g.sc62.117 Carica papaya HOM05D004136 ORTHO05D004817 2.5e-19 98.2 57 71.9
Sabra07G0025200 Salix brachista HOM05D004136 ORTHO05D004817 2.5e-19 98.2 52 80.8
A01p02190 Brassica napus HOM05D004136 ORTHO05D004817 3.2e-19 97.8 63 68.3
Os07g0568400 Oryza sativa ssp. japonica HOM05D004136 ORTHO05D004817 3.2e-19 97.8 63 74.6
Solyc03g110920.2 Solanum lycopersicum HOM05D004136 ORTHO05D004817 3.2e-19 97.8 63 68.3
AT4G36720 Arabidopsis thaliana HOM05D004136 ORTHO05D004817 4.2e-19 97.4 63 69.8
Thecc.02G122900 Theobroma cacao HOM05D004136 ORTHO05D004817 4.2e-19 97.4 55 78.2
Nitab4.5_0001361g0200 Nicotiana tabacum HOM05D004136 ORTHO05D004817 5.5e-19 97.1 53 81.1
Nitab4.5_0005152g0080 Nicotiana tabacum HOM05D004136 ORTHO05D004817 5.5e-19 97.1 53 81.1
Solyc10g051300.2 Solanum lycopersicum HOM05D004136 ORTHO05D004817 5.5e-19 97.1 53 81.1
Sopen10g022980 Solanum pennellii HOM05D004136 ORTHO05D004817 5.5e-19 97.1 53 81.1
PGSC0003DMG400033909 Solanum tuberosum HOM05D004136 ORTHO05D004817 5.5e-19 97.1 53 81.1
BraA01t00208Z Brassica rapa HOM05D001320 ORTHO05D006314 7.1e-19 96.7 63 66.7
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 7.1e-19 96.7 55 76.4
Duzib248G0461 Durio zibethinus HOM05D004136 ORTHO05D004817 7.1e-19 96.7 55 76.4
AUR62011354 Chenopodium quinoa HOM05D004136 ORTHO05D004817 1.6e-18 95.5 63 74.6
AUR62016708 Chenopodium quinoa HOM05D004136 ORTHO05D004817 1.6e-18 95.5 63 73.0
Lalb_Chr05g0212951 Lupinus albus HOM05D004136 ORTHO05D004817 1.6e-18 95.5 64 75.0
Peaxi162Scf00003g01333 Petunia axillaris HOM05D004136 ORTHO05D004817 1.6e-18 95.5 53 81.1
DCAR_022101 Daucus carota HOM05D004136 ORTHO05D004817 2.1e-18 95.1 63 76.2
TWI75G1726 Tripterygium wilfordii HOM05D004136 ORTHO05D004817 2.1e-18 95.1 53 81.1
arahy.Tifrunner.gnm1.ann1.4DKU0T Arachis hypogaea HOM05D004136 ORTHO05D004817 4.6e-18 94.0 52 75.0
arahy.Tifrunner.gnm1.ann1.QP0UED Arachis hypogaea HOM05D004136 ORTHO05D004817 4.6e-18 94.0 52 75.0
Gohir.A03G179700 Gossypium hirsutum HOM05D004136 ORTHO05D004817 4.6e-18 94.0 55 74.5
CAN.G1.45 Capsicum annuum HOM05D004136 ORTHO05D004817 6.0e-18 93.6 52 80.8
Gorai.005G228600 Gossypium raimondii HOM05D004136 ORTHO05D004817 6.0e-18 93.6 55 72.7
Gohir.D04G158900 Gossypium hirsutum HOM05D004136 ORTHO05D004817 7.9e-18 93.2 51 78.4
Lsat_1_v5_gn_7_89700 Lactuca sativa HOM05D004136 ORTHO05D004817 1.0e-17 92.8 53 73.6
Zm00001eb148430 Zea mays HOM05D004136 ORTHO05D004817 1.0e-17 92.8 63 69.8
Ah.01g019590 Amaranthus hybridus HOM05D004136 ORTHO05D004817 1.8e-17 92.0 63 68.3
C07p61890 Brassica napus HOM05D004136 ORTHO05D004817 1.8e-17 92.0 53 75.5
PGSC0003DMG401015201 Solanum tuberosum HOM05D004136 ORTHO05D004817 1.8e-17 92.0 54 72.2
DCAR_017235 Daucus carota HOM05D004136 ORTHO05D004817 2.3e-17 91.7 63 66.7
SalBow6G5424 Salvia bowleyana HOM05D004136 ORTHO05D004817 3.0e-17 91.3 53 75.5
SalBow6G6921 Salvia bowleyana HOM05D004136 ORTHO05D004817 3.0e-17 91.3 53 75.5
Mapoly0166s0019 Marchantia polymorpha HOM05D004136 ORTHO05D004817 3.9e-17 90.9 63 65.1
Manes.15G167200 Manihot esculenta HOM05D004136 ORTHO05D004817 8.7e-17 89.7 51 78.4
Gohir.D02G202933 Gossypium hirsutum HOM05D004136 ORTHO05D004817 1.9e-16 88.6 55 69.1
Sopen03g030110 Solanum pennellii HOM05D004136 ORTHO05D004817 1.9e-16 88.6 52 73.1
TWI75G0712 Tripterygium wilfordii HOM05D004136 ORTHO05D004817 7.4e-16 86.7 83 54.2
Glyma.11G119700 Glycine max HOM05D004136 ORTHO05D004817 1.6e-15 85.5 53 73.6
AagrBONN_evm.TU.Sc2ySwM_344.5399 Anthoceros agrestis HOM05D004136 ORTHO05D004817 2.1e-15 85.1 63 61.9
Glyma.19G024600 Glycine max HOM05D004136 ORTHO05D004817 1.1e-14 82.8 53 69.8
Glyma.12G044900 Glycine max HOM05D004136 ORTHO05D004817 1.4e-14 82.4 55 67.3
SEGI_19820 Sequoiadendron giganteum HOM05D004136 ORTHO05D004817 1.2e-13 79.3 52 67.3
Pp3c2_21660 Physcomitrium patens HOM05D004136 ORTHO05D004817 5.9e-13 77.0 63 54.0
VMungo1127G1479 Vigna mungo HOM05D004136 ORTHO05D004817 5.9e-13 77.0 52 65.4
Phvul.011G046900 Phaseolus vulgaris HOM05D004136 ORTHO05D004817 4.2e-11 70.9 53 62.3
Prupe.8G101900 Prunus persica HOM05D004136 ORTHO05D004817 1.3e-09 65.9 32 87.5
Ciclev10033473m.g Citrus clementina HOM05D004136 ORTHO05D004817 6.7e-09 63.5 52 53.8
SMO140G0008 Selaginella moellendorffii HOM05D004136 ORTHO05D004817 1.1e-08 62.8 58 46.6
SMO215G0008 Selaginella moellendorffii HOM05D004136 ORTHO05D004817 1.1e-08 62.8 58 46.6
SGA_v2.0_scaffold58G20560 Striga asiatica HOM05D000001 ORTHO05D009502 1.6e-07 58.9 30 80.0
Ciclev10026788m.g Citrus clementina HOM05D004136 ORTHO05D151648 4.8e-07 57.4 37 73.0


User provided reference genes

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