Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1711.4 852 100.0
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1507.3 850 88.2
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1489.9 840 88.1
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1478.0 852 87.1
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1473.4 846 86.4
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1469.9 846 86.4
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1454.5 851 84.8
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1427.9 854 83.7
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1401.0 849 82.2
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1397.1 796 86.3
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1393.3 843 83.0
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1391.3 849 82.3
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1389.4 840 82.6
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1388.6 851 82.0
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1387.9 843 81.5
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1387.5 827 83.8
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1384.4 849 82.4
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1377.8 848 81.5
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1376.7 850 80.5
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1376.3 855 81.4
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1375.9 813 84.5
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1373.6 885 79.1
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1373.6 839 81.9
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1370.9 847 81.5
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1370.5 853 80.1
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1370.1 831 81.7
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1368.6 858 80.0
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1368.6 836 81.9
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1368.2 843 80.8
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1367.8 848 81.4
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1367.8 839 81.6
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1367.8 839 81.6
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1367.4 843 80.4
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1366.3 847 81.2
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1365.1 819 82.9
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1365.1 847 82.2
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1362.8 847 81.0
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1362.4 862 79.4
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1362.1 834 81.7
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1359.0 848 80.5
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1359.0 847 80.8
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1357.8 852 80.0
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1351.3 788 83.9
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1349.3 846 81.0
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1348.2 841 79.4
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1347.8 841 79.1
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1347.4 844 80.0
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1344.7 850 79.2
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1344.3 824 82.4
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1343.6 834 80.8
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1341.6 838 80.1
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1341.3 821 82.3
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1338.6 829 80.6
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1338.6 820 81.3
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1337.8 847 79.2
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1337.8 881 77.6
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1336.6 834 79.9
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1336.2 835 79.8
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1335.1 846 79.9
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1334.7 838 80.0
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1333.9 850 78.7
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1333.5 808 82.1
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1333.2 844 79.5
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1332.4 851 79.4
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1330.1 833 80.2
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1329.3 830 80.2
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1327.4 795 83.3
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1326.6 834 79.5
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1326.2 845 79.5
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1325.8 834 79.6
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1324.7 845 79.5
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1323.1 831 80.1
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1318.5 834 79.4
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1312.0 846 78.6
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1310.8 870 72.6
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1309.7 843 77.7
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1309.3 879 75.9
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1308.9 820 79.9
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1308.9 824 79.9
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1307.4 833 79.4
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1305.8 837 78.9
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1303.9 840 77.7
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1303.1 833 79.2
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1302.0 825 79.0
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1300.0 834 78.5
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1298.1 854 77.2
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1298.1 823 80.6
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1298.1 843 79.0
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1297.0 825 79.5
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1296.2 838 77.6
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1294.6 884 75.8
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1294.6 850 77.4
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1294.3 834 78.7
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1292.7 841 77.1
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1292.7 823 78.0
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1286.9 786 82.7
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1286.6 821 79.2
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1286.2 837 78.5
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1285.4 842 77.7
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1280.4 838 77.8
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1280.0 821 78.7
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1278.8 784 81.5
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1278.8 784 81.5
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1278.8 784 81.5
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1277.7 839 78.1
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1276.9 795 80.5
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1276.9 819 78.8
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1274.6 828 77.4
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1273.1 794 80.2
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1272.7 825 77.5
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1268.8 794 79.3
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1267.3 846 77.4
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1265.8 846 77.3
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1264.6 884 72.2
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1262.3 837 76.9
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1262.3 837 76.9
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1262.3 837 76.9
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1262.3 837 76.9
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1243.8 851 71.6
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1241.5 822 77.0
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1241.1 775 80.8
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1240.7 840 75.4
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1235.7 831 73.4
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1233.4 826 76.4
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1233.0 834 75.1
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1228.8 885 72.4
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1225.3 789 78.2
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1220.7 842 74.6
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1219.5 831 74.6
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1219.1 820 75.5
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1217.2 836 75.0
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1214.5 845 74.4
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1203.7 834 73.7
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1200.7 700 84.1
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1199.1 910 69.2
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1198.0 762 79.3
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1189.1 832 74.5
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1174.1 779 75.4
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1162.5 826 71.5
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1149.8 774 74.3
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1133.2 735 78.6
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1094.0 851 69.7
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 1.4e-308 1062.8 821 69.4
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 2.1e-296 1022.3 608 81.1
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 2.2e-277 959.1 598 74.7
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 7.1e-260 901.0 522 83.1
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 3.5e-259 898.7 541 83.9
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 7.9e-259 897.5 596 73.2
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.0e-206 723.4 713 58.5
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 4.0e-154 549.7 486 58.0
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 2.9e-144 516.9 373 70.2
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 1.5e-140 504.6 362 76.5
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 2.5e-111 407.5 316 71.2
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.1e-106 392.1 580 49.5
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 3.5e-105 387.1 397 56.2
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 1.9e-103 381.3 268 69.8
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 5.8e-60 236.9 156 76.3
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 4.4e-52 210.7 141 70.9
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 1.2e-44 186.0 163 58.3
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 6.2e-38 163.7 133 64.7
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 3.1e-37 161.4 503 29.6
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 6.0e-33 147.1 466 28.1
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 3.7e-30 137.9 76 85.5
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.2e-28 132.9 474 26.2
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 3.8e-27 127.9 472 27.8
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 4.9e-27 127.5 68 89.7
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 1.2e-25 122.9 411 28.5
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.6e-25 122.5 96 66.7
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 4.3e-23 114.4 69 73.9
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 6.1e-17 94.0 266 28.2
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 1.4e-16 92.8 221 32.6
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 2.8e-14 85.1 159 34.6
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 1.8e-13 82.4 83 48.2
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-08 65.5 70 47.1
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 1.7e-06 59.3 42 66.7


User provided reference genes

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