Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g29445 Nelumbo nucifera HOM05D007602 ORTHO05D009086 9.6e-25 115.9 55 100.0
Nn6g32178 Nelumbo nucifera HOM05D007602 ORTHO05D009086 7.6e-22 106.3 55 87.3
TAR381G0702 Trochodendron aralioides HOM05D007602 ORTHO05D009086 3.8e-21 104.0 55 85.5
MELO3C021943.2 Cucumis melo HOM05D007602 ORTHO05D009086 4.3e-17 90.5 55 76.4
CsaV3_2G014370 Cucumis sativus L. HOM05D007602 ORTHO05D009086 4.3e-17 90.5 55 76.4
PGR042G2915 Punica granatum HOM05D007602 ORTHO05D009086 4.3e-17 90.5 55 76.4
Manes.17G097600 Manihot esculenta HOM05D007602 ORTHO05D009086 7.4e-17 89.7 55 74.5
ClCG09G017780 Citrullus lanatus HOM05D007602 ORTHO05D009086 1.3e-16 89.0 55 74.5
Gohir.A04G129200 Gossypium hirsutum HOM05D007602 ORTHO05D009086 2.8e-16 87.8 55 72.7
Gohir.A04G129300 Gossypium hirsutum HOM05D007602 ORTHO05D009086 2.8e-16 87.8 55 72.7
Gohir.D04G174400 Gossypium hirsutum HOM05D007602 ORTHO05D009086 2.8e-16 87.8 55 72.7
Gorai.012G163800 Gossypium raimondii HOM05D007602 ORTHO05D009086 2.8e-16 87.8 55 72.7
Gorai.012G163900 Gossypium raimondii HOM05D007602 ORTHO05D009086 2.8e-16 87.8 55 72.7
Hma1.2p1_0584F.1_g183350 Hydrangea macrophylla HOM05D007602 ORTHO05D009086 2.8e-16 87.8 53 75.5
Manes.15G146500 Manihot esculenta HOM05D007602 ORTHO05D009086 2.8e-16 87.8 55 72.7
Thecc.08G131300 Theobroma cacao HOM05D007602 ORTHO05D009086 3.7e-16 87.4 55 72.7
Glyma.12G047200 Glycine max HOM05D007602 ORTHO05D009086 4.8e-16 87.0 55 72.7
Cpa.g.sc62.91 Carica papaya HOM05D007602 ORTHO05D009086 8.2e-16 86.3 55 72.7
Duzib248G0323 Durio zibethinus HOM05D007602 ORTHO05D009086 8.2e-16 86.3 55 70.9
Duzib248G0595 Durio zibethinus HOM05D007602 ORTHO05D009086 8.2e-16 86.3 55 70.9
Duzib248G1495 Durio zibethinus HOM05D007602 ORTHO05D009086 8.2e-16 86.3 55 70.9
Phvul.011G049200 Phaseolus vulgaris HOM05D007602 ORTHO05D009086 1.1e-15 85.9 55 74.5
Sed0020423 Sechium edule HOM05D007602 ORTHO05D009086 1.1e-15 85.9 55 70.9
Duzib132G1115 Durio zibethinus HOM05D007602 ORTHO05D009086 1.4e-15 85.5 55 69.1
Gohir.D04G174300 Gossypium hirsutum HOM05D007602 ORTHO05D009086 1.8e-15 85.1 55 70.9
Gorai.004G104500 Gossypium raimondii HOM05D007602 ORTHO05D009086 1.8e-15 85.1 55 70.9
Oeu007232.1 Olea europaea HOM05D007602 ORTHO05D009086 1.8e-15 85.1 55 70.9
CiPaw.05G059500 Carya illinoinensis HOM05D007602 ORTHO05D009086 3.1e-15 84.3 55 70.9
Solyc01g109220.4 Solanum lycopersicum HOM05D007602 ORTHO05D009086 3.1e-15 84.3 55 69.1
PGSC0003DMG400025161 Solanum tuberosum HOM05D007602 ORTHO05D009086 3.1e-15 84.3 55 69.1
Lj3g0015904 Lotus japonicus HOM05D007602 ORTHO05D009086 4.0e-15 84.0 55 70.9
Sabra04G0099200 Salix brachista HOM05D007602 ORTHO05D009086 4.0e-15 84.0 54 72.2
Glyma.11G122300 Glycine max HOM05D007602 ORTHO05D009086 6.9e-15 83.2 55 70.9
Sed0019655 Sechium edule HOM05D007602 ORTHO05D009086 6.9e-15 83.2 55 65.5
Thecc.02G030000 Theobroma cacao HOM05D007602 ORTHO05D009086 6.9e-15 83.2 55 69.1
Haze_02438 Corylus avellana HOM05D007602 ORTHO05D009086 1.2e-14 82.4 54 70.4
CAN.G322.99 Capsicum annuum HOM05D007602 ORTHO05D009086 1.5e-14 82.0 55 67.3
COL.COLO4_17788 Corchorus olitorius HOM05D007602 ORTHO05D009086 1.5e-14 82.0 55 70.9
Potri.004G149200 Populus trichocarpa HOM05D007602 ORTHO05D009086 1.5e-14 82.0 55 69.1
CANSAT25G1814 Cannabis sativa HOM05D007602 ORTHO05D009086 2.0e-14 81.6 55 69.1
Migut.B00282 Erythranthe guttata HOM05D007602 ORTHO05D009086 2.0e-14 81.6 55 67.3
Cfa004963 Carpinus fangiana HOM05D007602 ORTHO05D009086 2.6e-14 81.3 55 69.1
Ciclev10029767m.g Citrus clementina HOM05D007602 ORTHO05D009086 2.6e-14 81.3 55 67.3
Prupe.8G107900 Prunus persica HOM05D007602 ORTHO05D009086 4.5e-14 80.5 55 65.5
Hma1.2p1_1353F.1_g277670 Hydrangea macrophylla HOM05D007602 ORTHO05D009086 5.8e-14 80.1 55 65.5
Hma1.2p1_2724F.1_g327525 Hydrangea macrophylla HOM05D007602 ORTHO05D009086 5.8e-14 80.1 55 65.5
Lj5E203T0 Lonicera japonica HOM05D007602 ORTHO05D009086 5.8e-14 80.1 55 67.3
Ca_07356_v3 Cicer arietinum L. HOM05D007602 ORTHO05D009086 7.6e-14 79.7 55 65.5
Glyma.12G082000 Glycine max HOM05D007602 ORTHO05D009086 7.6e-14 79.7 54 68.5
Medtr4g068710 Medicago truncatula HOM05D007602 ORTHO05D009086 7.6e-14 79.7 55 67.3
VMungo1127G0479 Vigna mungo HOM05D007602 ORTHO05D009086 7.6e-14 79.7 50 74.0
Potri.009G110100 Populus trichocarpa HOM05D007602 ORTHO05D009086 1.3e-13 79.0 55 65.5
TWI31G0092 Tripterygium wilfordii HOM05D007602 ORTHO05D009086 1.7e-13 78.6 55 67.3
Lalb_Chr01g0002891 Lupinus albus HOM05D007602 ORTHO05D009086 2.9e-13 77.8 55 65.5
Nn5g29444 Nelumbo nucifera HOM05D007602 ORTHO05D009086 2.9e-13 77.8 59 66.1
THA.LOC104798806 Tarenaya hassleriana HOM05D007602 ORTHO05D009086 2.9e-13 77.8 55 69.1
THA.LOC104808449 Tarenaya hassleriana HOM05D007602 ORTHO05D009086 2.9e-13 77.8 55 69.1
AL1G56570 Arabidopsis lyrata HOM05D007602 ORTHO05D009086 3.8e-13 77.4 55 65.5
AT1G49410 Arabidopsis thaliana HOM05D007602 ORTHO05D009086 3.8e-13 77.4 55 63.6
CSS0038117 Camellia sinensis var. sinensis HOM05D007602 ORTHO05D009086 3.8e-13 77.4 55 63.6
Carub.0001s3861 Capsella rubella HOM05D007602 ORTHO05D009086 5.0e-13 77.0 55 65.5
Lalb_Chr03g0025901 Lupinus albus HOM05D007602 ORTHO05D009086 5.0e-13 77.0 55 65.5
HPP92_000754 Vanilla planifolia HOM05D001821 ORTHO05D009086 6.5e-13 76.6 55 61.8
A08p03960 Brassica napus HOM05D007602 ORTHO05D009086 8.4e-13 76.3 55 65.5
Glyma.16G059100 Glycine max HOM05D007602 ORTHO05D009086 8.4e-13 76.3 50 70.0
FAN20G1774 Fragaria x ananassa HOM05D007602 ORTHO05D009086 3.2e-12 74.3 52 65.4
BcaB02g11073 Brassica carinata HOM05D007602 ORTHO05D009086 4.2e-12 73.9 55 60.0
BcaB04g17343 Brassica carinata HOM05D007602 ORTHO05D009086 4.2e-12 73.9 55 63.6
CARHR039420 Cardamine hirsuta HOM05D007602 ORTHO05D009086 1.6e-11 72.0 55 60.0
Lsat_1_v5_gn_9_109200 Lactuca sativa HOM05D007602 ORTHO05D009086 1.6e-11 72.0 53 62.3
Mapoly0014s0113 Marchantia polymorpha HOM05D007602 ORTHO05D009086 1.6e-11 72.0 54 55.6
Sopen10g022680 Solanum pennellii HOM05D000002 ORTHO05D000001 2.1e-11 71.6 47 68.1
Thhalv10011932m.g Eutrema salsugineum HOM05D007602 ORTHO05D009086 2.7e-11 71.2 55 58.2
RcHm_v2.0_Chr6g0262021 Rosa chinensis HOM05D007602 ORTHO05D009086 2.7e-11 71.2 55 61.8
ECA240G4508 Erigeron canadensis HOM05D007602 ORTHO05D009086 6.1e-11 70.1 52 61.5
MD10G1085000 Malus domestica HOM05D007602 ORTHO05D009086 6.1e-11 70.1 50 64.0
BcaC07g37055 Brassica carinata HOM05D003421 ORTHO05D009086 2.3e-10 68.2 46 69.6
Atru.chr12.1346 Acer truncatum HOM05D007602 ORTHO05D009086 3.0e-10 67.8 48 64.6
Aa31LG10G4570 Aethionema arabicum HOM05D007602 ORTHO05D009086 3.0e-10 67.8 56 58.9
Sabra09G0084100 Salix brachista HOM05D007602 ORTHO05D009086 3.0e-10 67.8 44 68.2
DCAR_022083 Daucus carota HOM05D007602 ORTHO05D009086 5.1e-10 67.0 55 56.4
Pp3c5_22850 Physcomitrium patens HOM05D007602 ORTHO05D009086 5.1e-10 67.0 53 50.9
MD00G1073700 Malus domestica HOM05D007602 ORTHO05D009086 1.1e-09 65.9 50 62.0
Pp3c6_6800 Physcomitrium patens HOM05D007602 ORTHO05D009086 1.1e-09 65.9 53 50.9
unitig_21.g20769 Utricularia gibba HOM05D007602 ORTHO05D009086 1.9e-09 65.1 40 75.0
Aa31LG8G5770 Aethionema arabicum HOM05D000086 ORTHO05D008850 3.3e-09 64.3 55 58.2
SGA_v2.0_scaffold32G13134 Striga asiatica HOM05D000790 ORTHO05D000769 2.2e-08 61.6 49 59.2
MD11G1171200 Malus domestica HOM05D007602 ORTHO05D009086 6.3e-08 60.1 49 55.1
Os03g0626200 Oryza sativa ssp. japonica HOM05D007602 ORTHO05D009086 1.1e-07 59.3 54 46.3
SHI05446 Sapria himalayana HOM05D007602 ORTHO05D009086 1.8e-07 58.5 36 69.4
Nitab4.5_0003281g0040 Nicotiana tabacum HOM05D007602 ORTHO05D009086 9.0e-07 56.2 34 76.5
Nitab4.5_0003816g0110 Nicotiana tabacum HOM05D007602 ORTHO05D009086 9.0e-07 56.2 34 76.5
AUR62038779 Chenopodium quinoa HOM05D007602 ORTHO05D009086 2.6e-06 54.7 55 50.9
AUR62037762 Chenopodium quinoa HOM05D007602 ORTHO05D009086 4.5e-06 53.9 50 48.0
Peaxi162Scf00016g01124 Petunia axillaris HOM05D007602 ORTHO05D009086 7.7e-06 53.1 34 70.6


User provided reference genes

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