Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 2.0e-57 225.7 127 100.0
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 4.6e-46 188.0 129 82.2
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 3.6e-43 178.3 127 81.1
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 9.0e-42 173.7 128 78.9
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 2.1e-38 162.5 124 73.4
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 3.0e-37 158.7 128 73.4
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 3.0e-37 158.7 127 71.7
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 6.7e-37 157.5 104 80.8
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 1.5e-36 156.4 122 74.6
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 2.5e-36 155.6 128 71.9
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 2.5e-36 155.6 128 73.4
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 7.4e-36 154.1 127 70.1
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 7.4e-36 154.1 127 73.2
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 9.6e-36 153.7 126 70.6
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 2.1e-35 152.5 125 72.0
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 2.1e-35 152.5 128 70.3
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.1e-35 152.5 128 73.4
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 2.1e-35 152.5 130 72.3
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 2.8e-35 152.1 125 72.0
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.8e-35 152.1 125 72.8
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 2.8e-35 152.1 126 71.4
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.7e-35 151.8 125 71.2
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.7e-35 151.8 125 71.2
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 4.8e-35 151.4 128 68.0
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 6.2e-35 151.0 126 69.8
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 8.1e-35 150.6 127 69.3
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 8.1e-35 150.6 128 72.7
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 1.1e-34 150.2 125 70.4
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.1e-34 150.2 125 70.4
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 3.1e-34 148.7 126 68.3
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.1e-34 148.7 126 68.3
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.0e-34 148.3 125 69.6
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.3e-34 147.9 126 68.3
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 5.3e-34 147.9 126 67.5
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 5.3e-34 147.9 121 70.2
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.9e-34 147.5 125 69.6
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 9.0e-34 147.1 126 66.7
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 9.0e-34 147.1 125 68.8
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 9.0e-34 147.1 127 68.5
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.2e-33 146.7 126 68.3
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 1.2e-33 146.7 117 73.5
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 1.5e-33 146.4 129 69.8
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.0e-33 146.0 125 68.8
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 2.6e-33 145.6 128 66.4
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.6e-33 145.6 125 68.0
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 2.6e-33 145.6 128 69.5
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 3.4e-33 145.2 127 67.7
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 4.5e-33 144.8 127 69.3
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 5.8e-33 144.4 125 68.0
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.8e-33 144.4 125 68.0
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 5.8e-33 144.4 127 66.1
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 5.8e-33 144.4 127 67.7
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 7.6e-33 144.1 127 66.9
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 9.9e-33 143.7 127 64.6
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 1.3e-32 143.3 126 65.1
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 1.3e-32 143.3 127 67.7
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 1.7e-32 142.9 129 65.1
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 1.7e-32 142.9 127 66.9
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 2.9e-32 142.1 124 68.5
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 2.9e-32 142.1 127 68.5
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 2.9e-32 142.1 127 66.9
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 3.8e-32 141.7 122 66.4
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 3.8e-32 141.7 126 70.6
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 4.9e-32 141.4 102 75.5
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 4.9e-32 141.4 128 64.1
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 6.4e-32 141.0 123 69.1
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 6.4e-32 141.0 124 67.7
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 8.4e-32 140.6 127 65.4
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 8.4e-32 140.6 127 65.4
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 8.4e-32 140.6 107 75.7
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 1.4e-31 139.8 125 68.8
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 1.9e-31 139.4 127 68.5
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 3.2e-31 138.7 125 65.6
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 4.2e-31 138.3 127 63.0
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 5.5e-31 137.9 131 66.4
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 7.1e-31 137.5 125 68.0
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 7.1e-31 137.5 125 68.8
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 7.1e-31 137.5 129 67.4
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.2e-30 136.7 126 61.9
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 1.2e-30 136.7 127 64.6
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 1.2e-30 136.7 128 68.0
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 1.6e-30 136.3 116 68.1
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 1.6e-30 136.3 116 68.1
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 1.6e-30 136.3 120 65.0
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 2.1e-30 136.0 127 65.4
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.7e-30 135.6 129 66.7
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 4.6e-30 134.8 128 67.2
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 6.0e-30 134.4 124 63.7
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 6.0e-30 134.4 123 64.2
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 1.0e-29 133.7 125 65.6
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 1.3e-29 133.3 95 81.1
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 1.3e-29 133.3 130 63.8
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 1.8e-29 132.9 128 64.8
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 2.3e-29 132.5 125 67.2
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 3.0e-29 132.1 125 61.6
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 3.9e-29 131.7 125 66.4
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 3.9e-29 131.7 99 72.7
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 3.9e-29 131.7 125 62.4
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 3.9e-29 131.7 127 62.2
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 5.1e-29 131.3 128 64.8
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 5.1e-29 131.3 126 66.7
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 5.1e-29 131.3 125 65.6
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 6.7e-29 131.0 128 65.6
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 8.7e-29 130.6 125 64.8
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.5e-28 129.8 128 61.7
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 1.9e-28 129.4 120 64.2
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 3.3e-28 128.6 127 65.4
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 4.3e-28 128.3 127 62.2
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 9.6e-28 127.1 129 62.0
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 1.3e-27 126.7 125 65.6
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 1.6e-27 126.3 128 64.8
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 1.6e-27 126.3 127 63.0
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.7e-27 125.2 100 70.0
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 3.7e-27 125.2 122 59.8
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 6.2e-27 124.4 118 62.7
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 8.2e-27 124.0 127 57.5
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 1.4e-26 123.2 126 61.1
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 1.8e-26 122.9 127 60.6
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 1.8e-26 122.9 98 70.4
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 3.1e-26 122.1 127 59.1
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 1.2e-25 120.2 128 58.6
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 1.2e-25 120.2 128 58.6
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 1.2e-25 120.2 128 58.6
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 1.5e-25 119.8 128 59.4
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 2.0e-25 119.4 125 59.2
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 2.0e-25 119.4 125 59.2
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 2.6e-25 119.0 125 59.2
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 2.6e-25 119.0 129 61.2
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 2.6e-25 119.0 129 61.2
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 2.6e-25 119.0 128 60.2
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 2.6e-25 119.0 127 59.1
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 3.4e-25 118.6 126 59.5
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 3.4e-25 118.6 126 58.7
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 7.6e-25 117.5 124 61.3
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 1.0e-24 117.1 131 55.0
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.0e-24 117.1 130 58.5
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 1.3e-24 116.7 113 62.8
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 1.3e-24 116.7 123 59.3
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 1.7e-24 116.3 125 57.6
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 4.9e-24 114.8 130 59.2
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.1e-23 113.6 130 56.9
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 7.1e-23 110.9 124 57.3
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 1.3e-21 106.7 130 55.4
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 2.3e-21 105.9 125 55.2
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 2.5e-20 102.4 129 51.2
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 4.3e-20 101.7 123 52.0
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 7.4e-20 100.9 130 54.6
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 1.1e-18 97.1 104 53.8
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 2.4e-18 95.9 106 56.6
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 1.5e-17 93.2 122 48.4
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 2.0e-17 92.8 127 43.3
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 1.4e-15 86.7 127 43.3
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 3.2e-15 85.5 73 65.8
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 5.5e-15 84.7 89 50.6
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 5.5e-15 84.7 56 82.1
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 2.7e-14 82.4 81 61.7
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 3.6e-14 82.0 73 64.4
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 1.4e-13 80.1 127 43.3
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 5.1e-13 78.2 55 78.2
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 5.1e-13 78.2 127 44.9
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 2.2e-11 72.8 108 45.4
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 2.8e-11 72.4 127 40.9
Psat3g122680 Pisum sativum HOM05D004388 ORTHO05D005106 9.4e-07 57.4 113 40.7


User provided reference genes

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