Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 0.0e+00 1164.8 572 100.0
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 4.2e-179 632.1 600 56.8
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 3.9e-145 519.2 570 49.5
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 5.9e-141 505.4 578 49.1
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 3.2e-139 499.6 580 46.7
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 3.7e-135 486.1 598 45.2
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 1.1e-134 484.6 571 47.1
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 1.8e-134 483.8 569 46.7
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 5.0e-132 475.7 566 46.1
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 1.6e-130 470.7 566 45.8
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 2.1e-130 470.3 565 45.5
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 7.9e-130 468.4 577 45.2
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 2.4e-126 456.8 573 43.3
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 3.1e-126 456.4 569 45.0
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 1.0e-124 451.4 601 46.4
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 1.3e-124 451.1 572 44.9
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 9.4e-123 444.9 493 49.5
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 3.9e-121 439.5 576 43.6
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 5.2e-121 439.1 577 45.2
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 3.3e-120 436.4 577 41.6
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 7.4e-120 435.3 551 45.9
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 1.4e-118 431.0 596 42.4
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.2e-117 427.9 572 41.6
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 2.0e-117 427.2 573 42.2
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 3.5e-117 426.4 561 42.6
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 6.5e-116 422.2 568 42.3
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 6.5e-116 422.2 572 41.4
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 6.5e-116 422.2 566 44.0
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 6.5e-116 422.2 566 44.0
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 1.1e-115 421.4 566 43.5
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 4.2e-115 419.5 579 43.2
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 5.7e-112 409.1 566 41.0
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 1.3e-111 407.9 570 41.9
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 1.3e-111 407.9 564 41.3
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 1.3e-111 407.9 564 41.8
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 8.3e-111 405.2 606 39.1
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 4.1e-110 402.9 568 42.1
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 7.7e-109 398.7 572 41.3
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 3.8e-108 396.4 564 40.8
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 1.1e-107 394.8 570 41.1
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 2.5e-107 393.7 573 41.2
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 3.2e-107 393.3 570 39.3
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 3.6e-106 389.8 578 41.3
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 8.0e-106 388.7 571 39.4
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 5.2e-105 386.0 564 40.8
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 4.4e-104 382.9 566 41.9
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 5.7e-104 382.5 573 38.4
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 9.8e-104 381.7 570 39.8
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 6.3e-103 379.0 575 39.7
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 1.6e-101 374.4 565 39.8
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 2.7e-101 373.6 568 40.0
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 8.6e-100 368.6 571 38.9
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 3.3e-99 366.7 590 39.7
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 2.1e-98 364.0 584 38.5
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 2.3e-97 360.5 577 38.0
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 1.2e-96 358.2 569 38.5
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 2.0e-96 357.5 576 38.7
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 7.5e-96 355.5 567 37.7
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 3.7e-95 353.2 486 40.5
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 6.3e-95 352.4 577 38.5
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 4.1e-94 349.7 576 38.5
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 5.4e-94 349.4 549 39.3
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 9.2e-94 348.6 577 37.3
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 7.8e-93 345.5 567 38.1
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 2.8e-90 337.0 576 35.4
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 4.7e-90 336.3 601 36.9
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 4.0e-89 333.2 568 37.7
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 2.6e-88 330.5 467 41.5
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 4.4e-88 329.7 567 36.9
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 3.9e-84 316.6 565 37.3
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 5.0e-84 316.2 561 36.0
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 8.6e-84 315.5 566 35.9
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 1.1e-83 315.1 613 34.3
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 1.5e-83 314.7 474 40.1
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 3.3e-83 313.5 564 36.2
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 1.2e-82 311.6 587 35.9
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 2.1e-82 310.8 561 35.3
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 2.8e-82 310.5 571 35.6
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 1.4e-81 308.1 561 35.3
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 2.6e-80 303.9 570 35.4
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 4.1e-78 296.6 567 33.5
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 4.1e-78 296.6 567 33.5
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 9.2e-78 295.4 417 41.7
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 2.5e-75 287.3 581 35.5
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 5.6e-75 286.2 579 35.4
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 1.9e-70 271.2 592 33.8
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 2.4e-70 270.8 563 34.1
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 7.8e-69 265.8 504 34.3
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 1.0e-68 265.4 389 38.3
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 1.5e-67 261.5 588 33.2
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 4.3e-67 260.0 457 36.1
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 9.6e-67 258.8 574 33.4
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 1.2e-64 251.9 310 43.2
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 5.8e-64 249.6 324 43.8
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 1.1e-57 228.8 565 30.6
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 2.4e-57 227.6 393 36.9
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 7.1e-54 216.1 313 40.6
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 3.9e-52 210.3 247 44.5
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 4.3e-51 206.8 321 40.2
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 1.6e-37 161.8 253 41.1
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 2.2e-26 124.8 162 43.2
CDE07G1850 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 1.0e-23 115.9 224 33.0
CDE07G0460 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 1.8e-20 105.1 250 32.4
SEGI_02281 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 1.5e-19 102.1 392 29.6
Prupe.5G239300 Prunus persica HOM05D006685 ORTHO05D008244 8.2e-18 96.3 99 50.5
FAN28G0437 Fragaria x ananassa HOM05D006685 ORTHO05D008244 4.1e-17 94.0 83 51.8
Pp3c3_30590 Physcomitrium patens HOM05D006685 ORTHO05D008244 2.9e-15 87.8 609 24.8
Mapoly0122s0032 Marchantia polymorpha HOM05D006685 ORTHO05D008244 3.8e-15 87.4 330 28.8
unitig_78.g29629 Utricularia gibba HOM05D006685 ORTHO05D008244 9.4e-14 82.8 300 27.0
AagrBONN_evm.TU.Sc2ySwM_228.383 Anthoceros agrestis HOM05D039764 ORTHO05D031174 3.0e-12 77.8 328 27.4
SEGI_38886 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 2.0e-11 75.1 214 27.6
SEGI_35306 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 4.1e-09 67.4 114 32.5
SEGI_32623 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 2.2e-07 61.6 266 28.2


User provided reference genes

Program Settings