Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 0.0e+00 1481.1 1099 100.0
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 2.2e-205 720.3 1149 58.2
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 2.3e-186 657.1 1069 60.1
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 2.9e-181 640.2 1135 59.6
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 1.0e-178 631.7 1132 58.7
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 5.3e-175 619.4 1134 57.8
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 1.3e-173 614.8 1161 50.6
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 3.2e-172 610.1 1184 56.0
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 2.3e-170 604.0 1061 61.5
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 3.7e-168 596.7 1159 60.9
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 8.3e-168 595.5 1173 60.4
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 4.1e-167 593.2 1085 59.2
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 1.2e-166 591.7 1133 62.0
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 7.7e-166 589.0 1131 61.1
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 6.1e-163 579.3 1099 59.2
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 1.4e-159 568.2 1140 60.4
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 1.4e-159 568.2 1125 54.3
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 7.8e-158 562.4 1140 60.3
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 1.7e-157 561.2 1140 60.4
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 3.9e-157 560.1 1064 58.5
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 2.8e-155 553.9 1207 48.8
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 3.6e-155 553.5 1138 51.7
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 4.4e-153 546.6 1145 51.4
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 4.9e-152 543.1 1122 55.7
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 4.9e-152 543.1 1122 56.7
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 4.9e-152 543.1 1125 55.9
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 1.9e-151 541.2 1127 54.3
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 1.9e-151 541.2 1113 59.1
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 2.0e-150 537.7 1132 59.4
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 2.7e-150 537.3 1169 45.0
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 5.0e-149 533.1 1122 59.4
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 6.6e-149 532.7 1113 54.5
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 8.6e-149 532.3 1122 59.4
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 8.6e-149 532.3 1112 58.6
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 2.5e-148 530.8 1106 51.6
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 2.5e-148 530.8 1122 60.1
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 3.3e-148 530.4 1037 62.5
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 4.3e-148 530.0 1124 51.0
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 3.1e-146 523.9 1120 54.9
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 1.2e-145 521.9 1097 60.9
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 2.6e-145 520.8 1128 55.6
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 1.6e-142 511.5 1149 58.0
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 1.3e-141 508.4 1134 54.2
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 5.1e-141 506.5 1128 55.1
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 6.6e-141 506.1 1205 46.6
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 5.6e-140 503.1 1123 58.5
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 1.2e-139 501.9 1132 56.0
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 2.8e-139 500.7 1129 55.1
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 2.6e-137 494.2 1100 56.9
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 9.9e-137 492.3 1094 55.1
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 1.7e-136 491.5 1105 49.8
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 8.3e-136 489.2 1121 58.8
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 1.9e-135 488.0 1101 55.3
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 1.9e-135 488.0 1166 56.0
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 2.4e-135 487.6 1022 63.6
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 3.2e-135 487.3 1141 47.3
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 5.4e-135 486.5 1126 53.8
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 1.0e-133 482.3 1093 55.0
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 3.0e-133 480.7 739 76.6
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 3.0e-133 480.7 715 78.2
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 5.6e-132 476.5 1101 57.6
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 7.3e-132 476.1 1094 58.5
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 3.6e-131 473.8 1106 58.0
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 1.1e-130 472.2 1147 50.1
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 5.2e-130 469.9 1166 56.0
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 1.2e-129 468.8 850 69.9
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 1.5e-129 468.4 811 70.5
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 3.4e-129 467.2 696 59.9
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 7.6e-129 466.1 1096 53.6
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 9.9e-129 465.7 1112 57.2
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 1.7e-128 464.9 1138 50.6
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 2.9e-128 464.2 1126 56.6
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 2.4e-127 461.1 1093 53.3
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 3.2e-127 460.7 1128 52.9
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 4.6e-126 456.8 1141 55.8
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 6.0e-126 456.4 1142 52.5
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 7.8e-126 456.1 1128 56.6
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 1.3e-125 455.3 1175 50.6
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 1.7e-125 454.9 1147 55.3
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 3.0e-125 454.1 1127 53.7
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 3.9e-125 453.8 1176 50.6
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 3.9e-125 453.8 1132 52.4
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 2.5e-124 451.1 1131 53.2
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 4.3e-124 450.3 1019 60.1
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 1.8e-122 444.9 1139 55.4
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 4.0e-122 443.7 860 57.8
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 2.2e-120 438.0 1050 48.1
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 1.9e-119 434.9 945 62.2
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 1.6e-118 431.8 756 64.3
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 3.5e-118 430.6 865 53.6
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 2.1e-115 421.4 1134 50.9
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 3.0e-109 401.0 1121 46.5
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 8.7e-109 399.4 272 73.2
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 3.2e-103 380.9 956 44.5
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 1.3e-101 375.6 762 58.4
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 1.3e-88 332.4 697 60.0
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 3.4e-81 307.8 262 60.3
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 1.1e-71 276.2 164 84.1
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 1.2e-54 219.5 518 64.1
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 1.5e-52 212.6 656 47.0
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 5.4e-50 204.1 689 63.9
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.0e-45 189.9 704 53.3
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 1.8e-45 189.1 254 40.9
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 2.3e-45 188.7 723 43.6
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 5.4e-42 177.6 270 40.4
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 3.5e-41 174.9 728 61.8
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 7.8e-41 173.7 123 69.1
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 1.5e-39 169.5 305 72.5
CDE09G0218 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 1.4e-37 162.9 128 67.2
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 5.8e-36 157.5 142 55.6
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 7.5e-36 157.1 728 59.9
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 1.3e-35 156.4 728 61.0
MBI09_g44523_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 2.2e-35 155.6 125 62.4
ATR0074G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 2.4e-34 152.1 107 71.0
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 1.6e-30 139.4 100 65.0
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 8.1e-30 137.1 93 65.6
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 1.1e-29 136.7 297 32.7
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 2.3e-29 135.6 664 57.5
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 7.5e-28 130.6 218 87.6
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 1.0e-24 120.2 122 54.9
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.6e-22 112.8 94 55.3
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 3.5e-17 95.1 246 32.9
QL11p047023 Quercus lobata HOM05D005996 ORTHO05D007507 4.9e-11 74.7 138 41.3
MBI09_g46961_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 3.0e-08 65.5 37 78.4
SEGI_16644 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 6.6e-08 64.3 41 70.7
SEGI_00210 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 1.6e-06 59.7 48 58.3


User provided reference genes

Program Settings