Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g29273 Nelumbo nucifera HOM05D005344 ORTHO05D006444 5.6e-12 72.8 33 100.0
Duzib093G0333 Durio zibethinus HOM05D005344 ORTHO05D006444 1.7e-08 61.2 32 84.4
Potri.004G228566 Populus trichocarpa HOM05D005344 ORTHO05D006444 1.7e-08 61.2 32 84.4
Potri.012G106900 Populus trichocarpa HOM05D005344 ORTHO05D006444 1.7e-08 61.2 32 84.4
Sabra01G0173600 Salix brachista HOM05D005344 ORTHO05D006444 1.7e-08 61.2 32 84.4
Thecc.08G040900 Theobroma cacao HOM05D005344 ORTHO05D006444 1.7e-08 61.2 32 84.4
CiPaw.08G064300 Carya illinoinensis HOM05D005344 ORTHO05D006444 2.2e-08 60.8 32 84.4
Haze_22604 Corylus avellana HOM05D005344 ORTHO05D006444 2.2e-08 60.8 32 84.4
Gohir.A05G214800 Gossypium hirsutum HOM05D005344 ORTHO05D006444 2.9e-08 60.5 32 81.2
Gohir.D05G218100 Gossypium hirsutum HOM05D005344 ORTHO05D006444 2.9e-08 60.5 32 81.2
Gorai.009G225000 Gossypium raimondii HOM05D005344 ORTHO05D006444 2.9e-08 60.5 32 81.2
TAR625G1223 Trochodendron aralioides HOM05D005344 ORTHO05D006444 2.9e-08 60.5 32 78.1
GSVIVG01009861001 Vitis vinifera HOM05D005344 ORTHO05D006444 2.9e-08 60.5 32 84.4
MELO3C003771.2 Cucumis melo HOM05D005344 ORTHO05D006444 3.8e-08 60.1 31 87.1
Nn6g32300 Nelumbo nucifera HOM05D005344 ORTHO05D006444 3.8e-08 60.1 31 87.1
PGR083G0019 Punica granatum HOM05D005344 ORTHO05D006444 3.8e-08 60.1 32 81.2
PGR102G3231 Punica granatum HOM05D005344 ORTHO05D006444 3.8e-08 60.1 32 81.2
QL03p018250 Quercus lobata HOM05D005344 ORTHO05D006444 3.8e-08 60.1 31 87.1
COL.COLO4_32025 Corchorus olitorius HOM05D005344 ORTHO05D006444 4.9e-08 59.7 32 81.2
Cfa013923 Carpinus fangiana HOM05D005344 ORTHO05D006444 6.4e-08 59.3 32 81.2
Lj1g0020845 Lotus japonicus HOM05D005344 ORTHO05D006444 6.4e-08 59.3 31 83.9
Sed0018322 Sechium edule HOM05D005344 ORTHO05D006444 6.4e-08 59.3 32 81.2
CsaV3_3G045650 Cucumis sativus L. HOM05D005344 ORTHO05D006444 8.4e-08 58.9 31 83.9
QL02p011006 Quercus lobata HOM05D005344 ORTHO05D006444 8.4e-08 58.9 31 83.9
TWI75G1031 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 8.4e-08 58.9 32 78.1
CANSAT56G2098 Cannabis sativa HOM05D005344 ORTHO05D006444 1.1e-07 58.5 32 78.1
Rhsim07G0245900 Rhododendron simsii HOM05D005344 ORTHO05D006444 1.1e-07 58.5 32 78.1
MBI05_g26505_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 1.4e-07 58.2 31 80.6
MBI07_g11722_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 1.4e-07 58.2 31 80.6
Atru.chr4.1572 Acer truncatum HOM05D005344 ORTHO05D006444 1.9e-07 57.8 32 75.0
ECA236G2959 Erigeron canadensis HOM05D005344 ORTHO05D006444 1.9e-07 57.8 32 78.1
unitig_899.g15276 Utricularia gibba HOM05D005344 ORTHO05D006444 1.9e-07 57.8 32 75.0
BcaB06g27347 Brassica carinata HOM05D005344 ORTHO05D006444 2.4e-07 57.4 32 75.0
A04p12340 Brassica napus HOM05D005344 ORTHO05D006444 2.4e-07 57.4 32 75.0
C04p46010 Brassica napus HOM05D005344 ORTHO05D006444 2.4e-07 57.4 32 75.0
BolC4t26183H Brassica oleracea HOM05D005344 ORTHO05D006444 2.4e-07 57.4 32 75.0
BraA04t16898Z Brassica rapa HOM05D005344 ORTHO05D006444 2.4e-07 57.4 32 75.0
Manes.18G015800 Manihot esculenta HOM05D005344 ORTHO05D006444 2.4e-07 57.4 32 78.1
Sp7g02390 Schrenkiella parvula HOM05D005344 ORTHO05D006444 2.4e-07 57.4 32 75.0
TAR381G0484 Trochodendron aralioides HOM05D005344 ORTHO05D006444 2.4e-07 57.4 32 75.0
Medtr1g013440 Medicago truncatula HOM05D005344 ORTHO05D006444 3.2e-07 57.0 31 80.6
Medtr3g113260 Medicago truncatula HOM05D005344 ORTHO05D006444 3.2e-07 57.0 31 80.6
Atru.chr12.1135 Acer truncatum HOM05D005344 ORTHO05D006444 4.2e-07 56.6 32 71.9
Cc10_g01930 Coffea canephora HOM05D005344 ORTHO05D006444 4.2e-07 56.6 32 78.1
Cpa.g.sc116.53 Carica papaya HOM05D005344 ORTHO05D006444 5.4e-07 56.2 31 80.6
CDE05G1229 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 5.4e-07 56.2 31 74.2
CDE05G1331 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 5.4e-07 56.2 31 74.2
ClCG05G018520 Citrullus lanatus HOM05D005344 ORTHO05D006444 5.4e-07 56.2 32 75.0
DCAR_013854 Daucus carota HOM05D005344 ORTHO05D006444 5.4e-07 56.2 32 71.9
Eucgr.F01631 Eucalyptus grandis HOM05D005344 ORTHO05D006444 5.4e-07 56.2 31 80.6
CSS0034614 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 7.1e-07 55.8 31 77.4
CANSAT56G2754 Cannabis sativa HOM05D005344 ORTHO05D006444 7.1e-07 55.8 32 75.0
Ca_16814_v3 Cicer arietinum L. HOM05D005344 ORTHO05D006444 7.1e-07 55.8 31 77.4
HanXRQChr04g0119171 Helianthus annuus HOM05D005344 ORTHO05D006444 7.1e-07 55.8 32 75.0
HanXRQChr15g0480961 Helianthus annuus HOM05D005344 ORTHO05D006444 7.1e-07 55.8 31 80.6
PSO541G4852 Papaver somniferum HOM05D005344 ORTHO05D006444 7.1e-07 55.8 32 75.0
PSO675G5369 Papaver somniferum HOM05D005344 ORTHO05D006444 7.1e-07 55.8 32 75.0
RcHm_v2.0_Chr6g0302491 Rosa chinensis HOM05D005344 ORTHO05D006444 7.1e-07 55.8 31 77.4
Sc02g0008440 Simmondsia chinensis HOM05D005344 ORTHO05D006444 7.1e-07 55.8 32 71.9
TAR625G0974 Trochodendron aralioides HOM05D005344 ORTHO05D006444 7.1e-07 55.8 31 74.2
Actinidia15404 Actinidia chinensis HOM05D005344 ORTHO05D006444 9.3e-07 55.5 31 74.2
arahy.Tifrunner.gnm1.ann1.0YI8WX Arachis hypogaea HOM05D005344 ORTHO05D006444 9.3e-07 55.5 31 77.4
arahy.Tifrunner.gnm1.ann1.2J2T1L Arachis hypogaea HOM05D005344 ORTHO05D006444 9.3e-07 55.5 31 77.4
arahy.Tifrunner.gnm1.ann1.2QY3VR Arachis hypogaea HOM05D005344 ORTHO05D006444 9.3e-07 55.5 31 77.4
arahy.Tifrunner.gnm1.ann1.H9RICG Arachis hypogaea HOM05D005344 ORTHO05D006444 9.3e-07 55.5 31 77.4
arahy.Tifrunner.gnm1.ann1.IGJ8TG Arachis hypogaea HOM05D005344 ORTHO05D006444 9.3e-07 55.5 31 77.4
arahy.Tifrunner.gnm1.ann1.NGB00B Arachis hypogaea HOM05D005344 ORTHO05D006444 9.3e-07 55.5 31 77.4
arahy.Tifrunner.gnm1.ann1.Y1NSFR Arachis hypogaea HOM05D005344 ORTHO05D006444 9.3e-07 55.5 31 77.4
arahy.Tifrunner.gnm1.ann1.Y8FRL8 Arachis hypogaea HOM05D005344 ORTHO05D006444 9.3e-07 55.5 31 77.4
FAN15G2308 Fragaria x ananassa HOM05D005344 ORTHO05D006444 9.3e-07 55.5 31 74.2
FAN20G2570 Fragaria x ananassa HOM05D005344 ORTHO05D006444 9.3e-07 55.5 31 74.2
Psat5g014400 Pisum sativum HOM05D005344 ORTHO05D006444 9.3e-07 55.5 31 77.4
Prupe.1G368800 Prunus persica HOM05D005344 ORTHO05D006444 9.3e-07 55.5 32 75.0
TPR.G38895 Trifolium pratense HOM05D005344 ORTHO05D006444 9.3e-07 55.5 31 77.4
TWI31G0971 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 9.3e-07 55.5 31 77.4
vmacro04337 Vaccinium macrocarpon HOM05D005344 ORTHO05D006444 9.3e-07 55.5 32 71.9
MSTRG.24255 Avicennia marina HOM05D005344 ORTHO05D006444 1.2e-06 55.1 32 75.0
CSS0046173 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.2e-06 55.1 31 74.2
CSS0046670 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.2e-06 55.1 31 74.2
CARHR262690 Cardamine hirsuta HOM05D005344 ORTHO05D006444 1.2e-06 55.1 31 77.4
MD02G1241500 Malus domestica HOM05D005344 ORTHO05D006444 1.2e-06 55.1 32 71.9
Nitab4.5_0005425g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 1.2e-06 55.1 31 77.4
Nitab4.5_0006992g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 1.2e-06 55.1 31 77.4
Prupe.1G182400 Prunus persica HOM05D005344 ORTHO05D006444 1.2e-06 55.1 32 75.0
Solyc04g081220.3 Solanum lycopersicum HOM05D005344 ORTHO05D006444 1.2e-06 55.1 31 77.4
Sopen04g034830 Solanum pennellii HOM05D005344 ORTHO05D006444 1.2e-06 55.1 31 77.4
PGSC0003DMG400003723 Solanum tuberosum HOM05D005344 ORTHO05D006444 1.2e-06 55.1 31 77.4
Dinv39499 Davidia involucrata HOM05D005344 ORTHO05D006444 1.6e-06 54.7 32 75.0
Nitab4.5_0001988g0010 Nicotiana tabacum HOM05D005344 ORTHO05D006444 1.6e-06 54.7 31 77.4
Thhalv10027992m.g Eutrema salsugineum HOM05D005344 ORTHO05D006444 2.1e-06 54.3 32 71.9
Oeu024518.1 Olea europaea HOM05D005344 ORTHO05D006444 2.1e-06 54.3 31 77.4
Phvul.009G015400 Phaseolus vulgaris HOM05D005344 ORTHO05D006444 2.1e-06 54.3 31 74.2
TPR.G5807 Trifolium pratense HOM05D005344 ORTHO05D006444 2.1e-06 54.3 31 77.4
AL7G50710 Arabidopsis lyrata HOM05D005344 ORTHO05D006444 2.7e-06 53.9 31 74.2
AT5G39600 Arabidopsis thaliana HOM05D005344 ORTHO05D006444 2.7e-06 53.9 31 74.2
arahy.Tifrunner.gnm1.ann1.3U1GZ3 Arachis hypogaea HOM05D005344 ORTHO05D006444 2.7e-06 53.9 31 74.2
arahy.Tifrunner.gnm1.ann1.ZTTZ43 Arachis hypogaea HOM05D005344 ORTHO05D006444 2.7e-06 53.9 31 74.2
MSTRG.22330 Avicennia marina HOM05D005344 ORTHO05D006444 2.7e-06 53.9 31 74.2
Migut.N03145 Erythranthe guttata HOM05D005344 ORTHO05D006444 2.7e-06 53.9 31 74.2
MD07G1075400 Malus domestica HOM05D005344 ORTHO05D006444 2.7e-06 53.9 32 71.9
SGA_v2.0_scaffold47G17494 Striga asiatica HOM05D005344 ORTHO05D006444 2.7e-06 53.9 32 71.9
VMungo1309G2030 Vigna mungo HOM05D005344 ORTHO05D006444 2.7e-06 53.9 31 74.2
CSS0040415 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 3.5e-06 53.5 31 71.0
Lsat_1_v5_gn_7_29421 Lactuca sativa HOM05D005344 ORTHO05D006444 3.5e-06 53.5 31 77.4
EL10Ac1g02258 Beta vulgaris HOM05D005344 ORTHO05D006444 4.6e-06 53.1 31 71.0
Carub.0007s3634 Capsella rubella HOM05D005344 ORTHO05D006444 4.6e-06 53.1 31 71.0
FvH4_2g38800 Fragaria vesca HOM05D005344 ORTHO05D006444 4.6e-06 53.1 31 71.0
Glyma.04G025800 Glycine max HOM05D005344 ORTHO05D006444 4.6e-06 53.1 31 74.2
Peaxi162Scf00287g01714 Petunia axillaris HOM05D005344 ORTHO05D006444 4.6e-06 53.1 32 68.8
SalBow8G2912 Salvia bowleyana HOM05D005344 ORTHO05D006444 4.6e-06 53.1 32 65.6
Aa31LG9G16480 Aethionema arabicum HOM05D005344 ORTHO05D006444 6.0e-06 52.8 31 71.0
Ciclev10002838m.g Citrus clementina HOM05D005344 ORTHO05D006444 6.0e-06 52.8 31 71.0
Glyma.06G025600 Glycine max HOM05D005344 ORTHO05D006444 6.0e-06 52.8 31 74.2
Oeu031192.1 Olea europaea HOM05D005344 ORTHO05D006444 6.0e-06 52.8 31 74.2
SHI08085 Sapria himalayana HOM05D005344 ORTHO05D006444 6.0e-06 52.8 31 74.2


User provided reference genes

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