Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g29260 Nelumbo nucifera HOM05D001543 ORTHO05D273178 2.8e-41 171.8 104 100.0
Nn6g32273 Nelumbo nucifera HOM05D001543 ORTHO05D001722 4.1e-16 88.2 81 64.2
Ah.02g124520 Amaranthus hybridus HOM05D001543 ORTHO05D001722 2.5e-13 79.0 94 44.7
TAR381G1108 Trochodendron aralioides HOM05D001543 ORTHO05D001722 2.5e-13 79.0 74 59.5
CDE04G2837 Ceratophyllum demersum HOM05D001543 ORTHO05D001722 6.1e-12 74.3 81 48.1
ATR1147G046 Amborella trichopoda HOM05D001543 ORTHO05D001722 7.9e-12 73.9 93 53.8
EL10As8g23841 Beta vulgaris HOM05D001543 ORTHO05D001722 3.0e-11 72.0 94 42.6
AUR62043611 Chenopodium quinoa HOM05D001543 ORTHO05D001722 3.9e-11 71.6 95 41.1
AUR62043715 Chenopodium quinoa HOM05D001543 ORTHO05D001722 3.9e-11 71.6 95 41.1
MBI03_g42690_MAGBIO Magnolia biondii HOM05D001543 ORTHO05D001722 8.8e-11 70.5 93 48.4
Dinv33614 Davidia involucrata HOM05D001543 ORTHO05D001722 2.0e-10 69.3 47 72.3
Dinv40070 Davidia involucrata HOM05D001543 ORTHO05D001722 2.0e-10 69.3 45 75.6
Eucgr.I02363 Eucalyptus grandis HOM05D001543 ORTHO05D001722 2.0e-10 69.3 82 50.0
Actinidia22993 Actinidia chinensis HOM05D001543 ORTHO05D001722 2.5e-10 68.9 82 51.2
Aqoxy481s001 Aquilegia oxysepala HOM05D001543 ORTHO05D001722 2.5e-10 68.9 79 49.4
Aqoxy5G01462 Aquilegia oxysepala HOM05D001543 ORTHO05D001722 2.5e-10 68.9 79 49.4
Potri.005G116400 Populus trichocarpa HOM05D001543 ORTHO05D001722 2.5e-10 68.9 80 51.2
Potri.007G014100 Populus trichocarpa HOM05D001543 ORTHO05D001722 2.5e-10 68.9 80 50.0
Sc16g0002020 Simmondsia chinensis HOM05D001543 ORTHO05D001722 5.7e-10 67.8 95 41.1
CSS0047822 Camellia sinensis var. sinensis HOM05D001543 ORTHO05D001722 7.4e-10 67.4 82 50.0
Manes.02G102500 Manihot esculenta HOM05D001543 ORTHO05D001722 7.4e-10 67.4 60 55.0
Cfa006956 Carpinus fangiana HOM05D001543 ORTHO05D001722 1.3e-09 66.6 90 54.4
GSVIVG01018805001 Vitis vinifera HOM05D001543 ORTHO05D001722 1.3e-09 66.6 79 45.6
CSS0001758 Camellia sinensis var. sinensis HOM05D001543 ORTHO05D001722 2.2e-09 65.9 44 72.7
Thecc.01G021300 Theobroma cacao HOM05D001543 ORTHO05D001722 2.2e-09 65.9 82 45.1
Haze_03795 Corylus avellana HOM05D001543 ORTHO05D001722 3.7e-09 65.1 90 53.3
Duzib147G1203 Durio zibethinus HOM05D001543 ORTHO05D001722 4.8e-09 64.7 82 45.1
vmacro21914 Vaccinium macrocarpon HOM05D001543 ORTHO05D001722 4.8e-09 64.7 82 47.6
Gohir.A11G176700 Gossypium hirsutum HOM05D001543 ORTHO05D001722 6.3e-09 64.3 47 66.0
Gohir.D11G184500 Gossypium hirsutum HOM05D001543 ORTHO05D001722 6.3e-09 64.3 47 66.0
Gorai.007G196200 Gossypium raimondii HOM05D001543 ORTHO05D001722 6.3e-09 64.3 47 66.0
QL06p033672 Quercus lobata HOM05D001543 ORTHO05D001722 6.3e-09 64.3 47 68.1
Rhsim10G0213500 Rhododendron simsii HOM05D001543 ORTHO05D001722 6.3e-09 64.3 47 66.0
Sabra05G0095400 Salix brachista HOM05D001543 ORTHO05D001722 6.3e-09 64.3 47 66.0
Prupe.7G166500 Prunus persica HOM05D001543 ORTHO05D001722 8.2e-09 63.9 81 48.1
Sc03g0003550 Simmondsia chinensis HOM05D001543 ORTHO05D001722 1.1e-08 63.5 60 50.0
Hma1.2p1_0258F.1_g104240 Hydrangea macrophylla HOM05D001543 ORTHO05D001722 1.4e-08 63.2 47 63.8
Hma1.2p1_0266F.1_g106840 Hydrangea macrophylla HOM05D001543 ORTHO05D001722 1.4e-08 63.2 47 63.8
Ciclev10024880m.g Citrus clementina HOM05D001543 ORTHO05D001722 1.8e-08 62.8 80 45.0
HPP92_022516 Vanilla planifolia HOM05D001543 ORTHO05D001722 1.8e-08 62.8 75 48.0
Lj4g0023129 Lotus japonicus HOM05D001543 ORTHO05D001722 3.1e-08 62.0 45 62.2
TPR.G30052 Trifolium pratense HOM05D001543 ORTHO05D001722 3.1e-08 62.0 47 66.0
MD02G1134300 Malus domestica HOM05D001543 ORTHO05D001722 5.3e-08 61.2 82 46.3
AUR62043237 Chenopodium quinoa HOM05D001543 ORTHO05D001722 6.9e-08 60.8 57 49.1
Glyma.02G049800 Glycine max HOM05D001543 ORTHO05D001722 6.9e-08 60.8 47 61.7
Phvul.003G260600 Phaseolus vulgaris HOM05D001543 ORTHO05D001722 6.9e-08 60.8 47 61.7
Glyma.16G130000 Glycine max HOM05D001543 ORTHO05D001722 1.2e-07 60.1 78 47.4
Ca_22368_v3 Cicer arietinum L. HOM05D001543 ORTHO05D001722 1.5e-07 59.7 47 57.4
COL.COLO4_21934 Corchorus olitorius HOM05D001543 ORTHO05D001722 2.0e-07 59.3 82 42.7
Lalb_Chr16g0391181 Lupinus albus HOM05D001543 ORTHO05D001722 2.0e-07 59.3 71 54.9
Psat4g098400 Pisum sativum HOM05D001543 ORTHO05D001722 5.9e-07 57.8 47 55.3
MSTRG.2697 Avicennia marina HOM05D001543 ORTHO05D001722 7.7e-07 57.4 81 39.5
Medtr8g076100 Medicago truncatula HOM05D001543 ORTHO05D001722 7.7e-07 57.4 47 53.2
Sopen02g013250 Solanum pennellii HOM05D001543 ORTHO05D001722 1.3e-06 56.6 47 51.1
FvH4_1g12020 Fragaria vesca HOM05D001543 ORTHO05D001722 2.2e-06 55.8 77 46.8
FAN19G1669 Fragaria x ananassa HOM05D001543 ORTHO05D001722 2.2e-06 55.8 77 46.8
FAN26G1839 Fragaria x ananassa HOM05D001543 ORTHO05D001722 2.9e-06 55.5 77 46.8
FAN28G0082 Fragaria x ananassa HOM05D001543 ORTHO05D001722 2.9e-06 55.5 77 45.5
arahy.Tifrunner.gnm1.ann1.0S8VPV Arachis hypogaea HOM05D001543 ORTHO05D001722 3.8e-06 55.1 81 40.7
arahy.Tifrunner.gnm1.ann1.9AZF4D Arachis hypogaea HOM05D001543 ORTHO05D001722 3.8e-06 55.1 81 40.7
ECA232G0756 Erigeron canadensis HOM05D001543 ORTHO05D001722 3.8e-06 55.1 47 53.2
Oeu035298.1 Olea europaea HOM05D001543 ORTHO05D001722 3.8e-06 55.1 82 41.5
RcHm_v2.0_Chr2g0099651 Rosa chinensis HOM05D001543 ORTHO05D001722 5.0e-06 54.7 80 41.2
Lj4A217T64 Lonicera japonica HOM05D001543 ORTHO05D001722 6.5e-06 54.3 44 56.8
Sc02g0003200 Simmondsia chinensis HOM05D001543 ORTHO05D001722 6.5e-06 54.3 60 46.7
Solyc02g062290.2 Solanum lycopersicum HOM05D001543 ORTHO05D001722 6.5e-06 54.3 81 37.0
PGSC0003DMG400019934 Solanum tuberosum HOM05D001543 ORTHO05D001722 6.5e-06 54.3 81 37.0


User provided reference genes

Program Settings