Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g29214 Nelumbo nucifera HOM05D005603 ORTHO05D006944 9.8e-244 846.3 402 100.0
Aqoxy5G01490 Aquilegia oxysepala HOM05D005603 ORTHO05D006944 6.0e-225 783.9 401 91.5
QL06p033966 Quercus lobata HOM05D005603 ORTHO05D006944 5.3e-221 770.8 402 90.8
CSS0040106 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 1.5e-220 769.2 404 90.8
Prupe.7G165200 Prunus persica HOM05D005603 ORTHO05D006944 7.6e-220 766.9 403 89.8
MD15G1249000 Malus domestica HOM05D005603 ORTHO05D006944 2.9e-219 765.0 401 89.5
TAR628G0819 Trochodendron aralioides HOM05D005603 ORTHO05D006944 2.9e-219 765.0 402 89.8
COL.COLO4_21962 Corchorus olitorius HOM05D005603 ORTHO05D006944 5.4e-218 760.8 402 90.3
CANSAT01G2298 Cannabis sativa HOM05D005603 ORTHO05D006944 7.1e-218 760.4 399 90.5
Sc03g0003440 Simmondsia chinensis HOM05D005603 ORTHO05D006944 9.3e-218 760.0 401 88.8
HanXRQChr16g0531111 Helianthus annuus HOM05D005603 ORTHO05D006944 1.2e-217 759.6 402 88.6
CiPaw.07G056000 Carya illinoinensis HOM05D005603 ORTHO05D006944 3.5e-217 758.1 404 89.9
FvH4_1g12160 Fragaria vesca HOM05D005603 ORTHO05D006944 3.5e-217 758.1 403 88.3
Hma1.2p1_0743F.1_g211450 Hydrangea macrophylla HOM05D005603 ORTHO05D006944 4.6e-217 757.7 415 87.7
PSO541G2355 Papaver somniferum HOM05D005603 ORTHO05D006944 6.0e-217 757.3 403 87.8
PSO675G2068 Papaver somniferum HOM05D005603 ORTHO05D006944 6.0e-217 757.3 403 87.8
Eucgr.I02369 Eucalyptus grandis HOM05D005603 ORTHO05D006944 1.7e-216 755.7 403 88.3
SGA_v2.0_scaffold47G17673 Striga asiatica HOM05D005603 ORTHO05D006944 1.7e-216 755.7 409 87.3
Glyma.01G168600 Glycine max HOM05D005603 ORTHO05D006944 3.0e-216 755.0 405 86.9
TAR376G0194 Trochodendron aralioides HOM05D005603 ORTHO05D006944 3.9e-216 754.6 403 89.1
Manes.02G101300 Manihot esculenta HOM05D005603 ORTHO05D006944 1.1e-215 753.1 400 89.5
Gohir.A02G169100 Gossypium hirsutum HOM05D005603 ORTHO05D006944 1.5e-215 752.7 402 89.1
TWI09G0997 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 1.5e-215 752.7 401 88.0
Ca_24898_v3 Cicer arietinum L. HOM05D005603 ORTHO05D006944 2.5e-215 751.9 405 86.7
ClCG01G020120 Citrullus lanatus HOM05D005603 ORTHO05D006944 2.5e-215 751.9 401 87.8
Gohir.D03G010900 Gossypium hirsutum HOM05D005603 ORTHO05D006944 2.5e-215 751.9 402 88.8
Gorai.003G011300 Gossypium raimondii HOM05D005603 ORTHO05D006944 2.5e-215 751.9 402 88.8
Glyma.11G074800 Glycine max HOM05D005603 ORTHO05D006944 4.3e-215 751.1 405 86.4
Nitab4.5_0008176g0030 Nicotiana tabacum HOM05D005603 ORTHO05D006944 4.3e-215 751.1 418 84.7
CsaV3_6G046890 Cucumis sativus L. HOM05D005603 ORTHO05D006944 5.6e-215 750.7 402 87.6
TPR.G2333 Trifolium pratense HOM05D005603 ORTHO05D006944 5.6e-215 750.7 405 86.2
VMungo1215G2039 Vigna mungo HOM05D005603 ORTHO05D006944 9.6e-215 750.0 404 86.4
Phvul.002G111500 Phaseolus vulgaris HOM05D005603 ORTHO05D006944 1.3e-214 749.6 405 86.4
Thecc.01G023100 Theobroma cacao HOM05D005603 ORTHO05D006944 1.3e-214 749.6 402 89.3
MSTRG.15764 Avicennia marina HOM05D005603 ORTHO05D006944 1.6e-214 749.2 402 87.6
RcHm_v2.0_Chr2g0099911 Rosa chinensis HOM05D005603 ORTHO05D006944 1.6e-214 749.2 403 88.1
GSVIVG01018824001 Vitis vinifera HOM05D005603 ORTHO05D006944 1.6e-214 749.2 390 90.8
MELO3C007885.2 Cucumis melo HOM05D005603 ORTHO05D006944 2.1e-214 748.8 402 87.3
Sopen02g029190 Solanum pennellii HOM05D005603 ORTHO05D006944 2.8e-214 748.4 403 87.3
MD02G1111100 Malus domestica HOM05D005603 ORTHO05D006944 4.8e-214 747.7 401 87.5
AUR62007651 Chenopodium quinoa HOM05D005603 ORTHO05D006944 1.4e-213 746.1 401 86.3
DCAR_021493 Daucus carota HOM05D005603 ORTHO05D006944 1.4e-213 746.1 404 86.9
Psat2g155920 Pisum sativum HOM05D005603 ORTHO05D006944 1.8e-213 745.7 405 85.9
Medtr5g021520 Medicago truncatula HOM05D005603 ORTHO05D006944 2.4e-213 745.3 406 86.0
arahy.Tifrunner.gnm1.ann1.V913IW Arachis hypogaea HOM05D005603 ORTHO05D006944 4.0e-213 744.6 405 86.2
Lj2g0023828 Lotus japonicus HOM05D005603 ORTHO05D006944 4.0e-213 744.6 410 85.9
Potri.005G117200 Populus trichocarpa HOM05D005603 ORTHO05D006944 4.0e-213 744.6 400 88.5
Ciclev10025760m.g Citrus clementina HOM05D005603 ORTHO05D006944 5.3e-213 744.2 401 87.0
Potri.007G015800 Populus trichocarpa HOM05D005603 ORTHO05D006944 5.3e-213 744.2 401 87.8
CDE05G2538 Ceratophyllum demersum HOM05D005603 ORTHO05D006944 1.5e-212 742.7 402 86.8
ATR0620G128 Amborella trichopoda HOM05D005603 ORTHO05D006944 2.0e-212 742.3 403 86.4
Cc07_g10420 Coffea canephora HOM05D005603 ORTHO05D006944 7.6e-212 740.3 391 88.7
Sed0002868 Sechium edule HOM05D005603 ORTHO05D006944 1.7e-211 739.2 401 86.5
Migut.L00039 Erythranthe guttata HOM05D005603 ORTHO05D006944 6.4e-211 737.3 403 85.9
Hund14030 Selenicereus undatus HOM05D005603 ORTHO05D006944 1.4e-210 736.1 402 85.8
THA.LOC104819186 Tarenaya hassleriana HOM05D005603 ORTHO05D006944 9.3e-210 733.4 401 85.5
Lsat_1_v5_gn_3_73720 Lactuca sativa HOM05D005603 ORTHO05D006944 2.1e-209 732.3 397 86.4
Oeu035330.1 Olea europaea HOM05D005603 ORTHO05D006944 2.7e-209 731.9 403 84.9
arahy.Tifrunner.gnm1.ann1.8YZ064 Arachis hypogaea HOM05D005603 ORTHO05D006944 4.6e-209 731.1 434 80.4
Nitab4.5_0000912g0020 Nicotiana tabacum HOM05D005603 ORTHO05D006944 4.6e-209 731.1 410 84.4
Aa31LG4G19220 Aethionema arabicum HOM05D005603 ORTHO05D006944 7.9e-209 730.3 402 84.1
AT3G51130 Arabidopsis thaliana HOM05D005603 ORTHO05D006944 7.9e-209 730.3 402 83.3
AL5G31550 Arabidopsis lyrata HOM05D005603 ORTHO05D006944 2.3e-208 728.8 402 83.1
ECA246G4842 Erigeron canadensis HOM05D005603 ORTHO05D006944 5.1e-208 727.6 390 87.4
Carub.0005s1753 Capsella rubella HOM05D005603 ORTHO05D006944 8.7e-208 726.9 402 82.8
PGSC0003DMG400003547 Solanum tuberosum HOM05D005603 ORTHO05D006944 1.9e-207 725.7 389 87.1
EL10As8g23850 Beta vulgaris HOM05D005603 ORTHO05D006944 2.5e-207 725.3 396 85.1
Thhalv10010418m.g Eutrema salsugineum HOM05D005603 ORTHO05D006944 1.3e-206 723.0 402 82.8
Peaxi162Scf00083g01233 Petunia axillaris HOM05D005603 ORTHO05D006944 1.3e-206 723.0 396 86.9
SalBow8G5567 Salvia bowleyana HOM05D005603 ORTHO05D006944 1.3e-206 723.0 414 84.1
CSS0042462 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 3.7e-206 721.5 402 86.3
Duzib147G0771 Durio zibethinus HOM05D005603 ORTHO05D006944 3.7e-206 721.5 389 88.4
Hund16476 Selenicereus undatus HOM05D005603 ORTHO05D006944 6.2e-206 720.7 432 80.1
Rhsim08G0035200 Rhododendron simsii HOM05D005603 ORTHO05D006944 8.1e-206 720.3 415 83.1
Os06g0714000 Oryza sativa ssp. japonica HOM05D005603 ORTHO05D006944 1.1e-205 719.9 399 84.0
CSS0001882 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 4.0e-205 718.0 402 85.8
HPP92_025419 Vanilla planifolia HOM05D005603 ORTHO05D006944 3.8e-203 711.4 400 84.0
Haze_03808 Corylus avellana HOM05D005603 ORTHO05D006944 4.9e-203 711.1 401 85.5
Sp5g11080 Schrenkiella parvula HOM05D005603 ORTHO05D006944 8.4e-203 710.3 402 82.1
BcaC06g33053 Brassica carinata HOM05D005603 ORTHO05D006944 1.1e-202 709.9 401 82.5
FAN28G0526 Fragaria x ananassa HOM05D005603 ORTHO05D006944 3.2e-202 708.4 403 83.9
CAN.G358.2 Capsicum annuum HOM05D005603 ORTHO05D006944 9.3e-202 706.8 391 84.9
Sed0017160 Sechium edule HOM05D005603 ORTHO05D006944 9.3e-202 706.8 404 82.7
A03p48150 Brassica napus HOM05D005603 ORTHO05D006944 9.6e-199 696.8 385 83.1
BraA03t13922Z Brassica rapa HOM05D005603 ORTHO05D006944 9.6e-199 696.8 385 83.1
FAN23G1635 Fragaria x ananassa HOM05D005603 ORTHO05D006944 1.3e-198 696.4 397 83.6
CARHR160730 Cardamine hirsuta HOM05D005603 ORTHO05D006944 6.3e-198 694.1 402 79.6
BolC7t45134H Brassica oleracea HOM05D005603 ORTHO05D006944 1.5e-196 689.5 387 82.7
Cpa.g.sc6.214 Carica papaya HOM05D005603 ORTHO05D006944 7.6e-196 687.2 420 81.0
Lj4C215G4 Lonicera japonica HOM05D005603 ORTHO05D006944 2.5e-194 682.2 403 81.9
MSTRG.3829 Avicennia marina HOM05D005603 ORTHO05D006944 9.3e-194 680.2 403 79.9
FAN19G0288 Fragaria x ananassa HOM05D005603 ORTHO05D006944 9.3e-194 680.2 387 83.5
C07p46180 Brassica napus HOM05D005603 ORTHO05D006944 8.7e-192 673.7 408 78.2
vmacro22086 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 1.1e-191 673.3 357 87.4
unitig_32.g11821 Utricularia gibba HOM05D005603 ORTHO05D006944 1.9e-191 672.5 385 82.1
TWI53G1238 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 5.7e-191 671.0 366 86.6
FAN26G2705 Fragaria x ananassa HOM05D005603 ORTHO05D006944 1.4e-189 666.4 380 83.4
BraA09t39879Z Brassica rapa HOM05D005603 ORTHO05D006944 4.5e-188 661.4 386 79.3
A09p44190 Brassica napus HOM05D005603 ORTHO05D006944 1.0e-187 660.2 386 79.0
Sabra05G0096200 Salix brachista HOM05D005603 ORTHO05D006944 1.7e-187 659.4 409 80.4
BolC8t50258H Brassica oleracea HOM05D005603 ORTHO05D006944 8.5e-187 657.1 386 78.5
Zm00001eb227930 Zea mays HOM05D005603 ORTHO05D006944 2.5e-186 655.6 399 77.9
BcaB01g00547 Brassica carinata HOM05D005603 ORTHO05D006944 3.2e-186 655.2 374 80.5
Duzib264G0505 Durio zibethinus HOM05D005603 ORTHO05D006944 6.1e-185 651.0 402 80.3
vmacro18394 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 4.3e-183 644.8 341 87.4
Sabra07G0013000 Salix brachista HOM05D005603 ORTHO05D006944 6.3e-182 641.0 402 77.9
C08p26410 Brassica napus HOM05D005603 ORTHO05D006944 7.4e-175 617.5 355 80.3
Lalb_Chr16g0377611 Lupinus albus HOM05D005603 ORTHO05D006944 1.1e-173 613.6 329 86.0
Pp3c2_6370 Physcomitrium patens HOM05D005603 ORTHO05D006944 4.2e-170 601.7 393 71.2
Ah.02g124640 Amaranthus hybridus HOM05D005603 ORTHO05D006944 3.6e-169 598.6 394 73.4
AagrBONN_evm.TU.Sc2ySwM_228.543 Anthoceros agrestis HOM05D005603 ORTHO05D006944 4.0e-168 595.1 398 70.9
Pp3c10_8990 Physcomitrium patens HOM05D005603 ORTHO05D006944 1.3e-166 590.1 394 69.8
Dinv40059 Davidia involucrata HOM05D005603 ORTHO05D006944 1.8e-165 586.3 305 90.5
SMO117G0153 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 9.1e-165 583.9 393 69.5
Dinv33602 Davidia involucrata HOM05D005603 ORTHO05D006944 1.6e-161 573.2 306 89.2
Actinidia31012 Actinidia chinensis HOM05D005603 ORTHO05D006944 1.6e-156 556.6 306 86.9
SEGI_22640 Sequoiadendron giganteum HOM05D005603 ORTHO05D006944 1.6e-156 556.6 346 76.6
Mapoly0152s0028 Marchantia polymorpha HOM05D005603 ORTHO05D006944 3.0e-152 542.3 400 65.8
Mapoly0094s0075 Marchantia polymorpha HOM05D005603 ORTHO05D006944 1.4e-144 516.9 393 61.8
Lalb_Chr09g0321921 Lupinus albus HOM05D005603 ORTHO05D006944 1.8e-120 436.8 242 85.1
SMO037G0002 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 3.3e-106 389.4 266 68.0
Solyc02g075630.3 Solanum lycopersicum HOM05D005603 ORTHO05D006944 9.3e-101 371.3 208 85.1
Nn015s41468 Nelumbo nucifera HOM05D005603 ORTHO05D006944 4.3e-98 362.5 171 100.0
Atru.chr3.766 Acer truncatum HOM05D005603 ORTHO05D006944 2.7e-92 343.2 195 82.1
Actinidia26078 Actinidia chinensis HOM05D005603 ORTHO05D006944 3.4e-87 326.2 218 76.1
Migut.H02480 Erythranthe guttata HOM05D005603 ORTHO05D006944 1.4e-85 320.9 372 50.8
Lalb_Chr09g0321931 Lupinus albus HOM05D005603 ORTHO05D006944 3.0e-83 313.2 160 88.8
Nn015s41469 Nelumbo nucifera HOM05D005603 ORTHO05D006944 1.1e-82 311.2 146 100.0
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 9.0e-80 301.6 434 40.6
CBR_g36682 Chara braunii HOM05D005603 ORTHO05D000002 2.2e-78 297.0 224 64.3
BcaC06g33054 Brassica carinata HOM05D005603 ORTHO05D006944 5.0e-62 242.7 143 81.1
CBR_g36680 Chara braunii HOM05D005603 ORTHO05D006944 2.0e-58 230.7 174 63.2
Atru.chr2.40 Acer truncatum HOM05D005603 ORTHO05D006944 2.3e-43 180.6 190 52.1
Actinidia31013 Actinidia chinensis HOM05D005603 ORTHO05D006944 3.8e-30 136.7 72 87.5
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 4.6e-23 113.2 202 39.1
Cfa027245 Carpinus fangiana HOM05D005603 ORTHO05D006944 5.4e-16 89.7 275 28.7
COL.COLO4_32114 Corchorus olitorius HOM05D000931 ORTHO05D002226 6.0e-07 59.7 52 57.7


User provided reference genes

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