Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1361.3 666 100.0
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1185.6 698 81.5
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1183.3 698 81.7
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1181.8 698 81.4
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1176.4 695 80.6
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1172.5 698 81.7
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1159.1 698 80.4
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1159.1 698 79.8
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1158.3 694 80.4
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1155.2 698 79.7
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1154.8 698 79.7
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1154.0 693 79.9
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1152.5 698 80.1
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1149.0 691 79.5
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1148.7 695 79.6
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1148.3 691 79.7
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1142.9 697 79.3
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1140.9 698 78.9
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1139.8 696 78.3
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1139.8 699 78.4
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1138.6 691 78.4
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1138.6 693 79.7
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1138.3 693 78.4
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1137.1 693 78.8
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1136.7 700 79.3
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1134.8 694 79.0
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1134.4 698 78.5
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1134.0 694 78.8
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1133.6 698 78.5
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1133.6 698 78.1
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1132.9 693 78.1
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1132.5 694 78.7
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1132.1 694 78.5
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1130.5 694 77.2
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1123.2 694 77.2
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1123.2 697 78.0
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1122.8 693 78.6
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1122.1 697 78.0
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1122.1 694 77.1
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1121.7 691 78.1
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1119.4 694 78.0
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1114.8 699 76.8
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1114.8 695 77.1
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1114.8 723 75.4
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1108.6 695 77.0
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1108.2 694 76.9
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1108.2 694 76.5
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1107.0 693 77.5
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1107.0 697 76.3
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1106.7 698 77.1
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1106.7 697 77.0
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1106.7 677 78.3
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1106.7 698 76.8
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1105.9 698 76.9
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1104.0 694 76.8
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1103.6 691 77.0
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1102.8 694 76.2
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1102.0 698 76.2
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1101.7 669 79.5
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1100.9 698 76.8
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1099.0 696 75.9
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1098.6 693 76.8
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1098.6 698 76.2
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1098.6 694 76.4
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1098.2 696 75.6
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1091.6 698 76.4
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1091.3 695 76.1
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1089.7 698 75.1
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1087.8 696 74.4
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1087.8 699 75.7
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1086.2 718 74.5
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1085.5 694 75.2
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1085.1 694 75.1
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1082.8 697 74.5
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1081.2 694 73.9
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1076.6 697 73.2
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 4.6e-312 1074.7 692 75.3
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 4.6e-312 1073.9 739 72.7
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 4.6e-312 1073.5 747 71.2
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 6.8e-311 1070.1 696 72.8
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 4.5e-310 1067.4 696 72.3
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.3e-309 1065.8 693 75.6
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 2.9e-309 1064.7 698 72.9
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 6.5e-309 1063.5 698 72.9
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 1.0e-306 1056.2 698 74.5
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 1.0e-306 1056.2 699 73.0
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 1.8e-306 1055.4 646 76.5
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 1.1e-305 1052.7 693 72.0
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 1.1e-305 1052.7 694 74.6
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 1.1e-305 1052.7 715 72.4
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 7.2e-300 1033.5 678 73.3
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.2e-299 1032.7 681 74.4
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 3.6e-299 1031.2 719 69.1
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 3.0e-298 1028.1 695 73.2
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 5.2e-298 1027.3 681 74.2
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 8.2e-296 1020.0 699 73.2
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 5.3e-295 1017.3 623 79.0
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 1.5e-289 999.2 704 69.7
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 2.0e-289 998.8 698 71.6
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 2.2e-285 985.3 706 68.0
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 4.5e-278 961.1 585 79.1
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 2.7e-270 935.3 695 65.9
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 2.7e-262 908.7 641 70.5
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 5.6e-252 874.4 680 66.5
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 5.2e-242 841.3 540 75.9
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 5.2e-242 841.3 581 70.4
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 1.9e-236 822.8 699 58.5
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 1.6e-219 766.5 701 55.9
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 5.3e-218 761.5 700 55.4
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 5.3e-218 761.5 700 55.4
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 6.9e-218 761.1 539 70.7
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.7e-214 749.2 702 54.6
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.0e-213 747.3 704 55.5
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 3.8e-208 728.8 442 79.0
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 2.5e-207 726.1 711 54.9
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 3.8e-192 675.6 386 83.2
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 1.1e-149 534.6 720 42.2
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 2.7e-137 493.4 481 55.1
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 3.5e-129 466.5 377 62.1
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 3.7e-102 376.7 762 34.5
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 2.0e-100 370.9 268 66.8
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 5.8e-100 369.4 227 80.2
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 5.0e-91 339.7 810 31.0
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 2.7e-89 334.0 248 66.5
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 6.7e-80 302.8 246 63.8
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 5.7e-79 299.7 178 81.5
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 9.4e-74 282.3 183 74.3
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 4.4e-71 273.5 247 57.9
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 9.7e-71 272.3 166 75.3
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 4.4e-63 246.9 235 54.0
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 1.0e-56 225.7 630 30.8
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 5.4e-53 213.4 127 75.6
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 8.3e-46 189.5 138 71.0
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 2.3e-40 171.4 145 63.4
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 4.9e-38 163.7 232 43.5
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 8.6e-35 152.9 95 75.8
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 2.6e-31 141.4 76 86.8
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 3.4e-31 141.0 75 85.3
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 8.9e-24 116.3 86 62.8
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 4.3e-18 97.4 88 52.3
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 4.9e-14 84.0 51 78.4
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 4.2e-13 80.9 51 72.5
HanXRQChr15g0473031 Helianthus annuus HOM05D005163 ORTHO05D220685 3.8e-06 57.8 32 84.4


User provided reference genes

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