Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g29137 Nelumbo nucifera HOM05D000029 ORTHO05D270962 2.9e-41 171.4 84 100.0
Nn8g38870 Nelumbo nucifera HOM05D000029 ORTHO05D277671 4.3e-24 114.4 65 86.2
Nn6g33906 Nelumbo nucifera HOM05D000029 ORTHO05D006111 6.4e-12 73.9 38 92.1
Cpa.g.sc13.290 Carica papaya HOM05D000029 ORTHO05D006111 8.4e-12 73.6 41 87.8
CSS0042469 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D006111 1.1e-11 73.2 38 89.5
CSS0044206 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D006111 1.4e-11 72.8 38 86.8
Manes.06G133300 Manihot esculenta HOM05D000029 ORTHO05D006111 1.4e-11 72.8 68 57.4
Sabra03G0074400 Salix brachista HOM05D000029 ORTHO05D006111 1.4e-11 72.8 41 85.4
Ciclev10004254m.g Citrus clementina HOM05D000029 ORTHO05D006111 1.9e-11 72.4 68 57.4
Potri.001G126100 Populus trichocarpa HOM05D000029 ORTHO05D006111 1.9e-11 72.4 68 57.4
Rhsim03G0165900 Rhododendron simsii HOM05D000029 ORTHO05D006111 1.9e-11 72.4 41 85.4
vmacro22804 Vaccinium macrocarpon HOM05D000029 ORTHO05D006111 1.9e-11 72.4 41 85.4
vmacro23314 Vaccinium macrocarpon HOM05D000029 ORTHO05D006111 1.9e-11 72.4 41 85.4
COL.COLO4_14099 Corchorus olitorius HOM05D000029 ORTHO05D006111 2.4e-11 72.0 68 57.4
Duzib084G0549 Durio zibethinus HOM05D000029 ORTHO05D006111 2.4e-11 72.0 68 57.4
Duzib205G1389 Durio zibethinus HOM05D000029 ORTHO05D006111 2.4e-11 72.0 68 57.4
Gohir.D07G046300 Gossypium hirsutum HOM05D000029 ORTHO05D006111 2.4e-11 72.0 38 89.5
Gorai.001G049500 Gossypium raimondii HOM05D000029 ORTHO05D006111 2.4e-11 72.0 38 89.5
Manes.14G037000 Manihot esculenta HOM05D000029 ORTHO05D006111 2.4e-11 72.0 61 67.2
Thecc.03G153300 Theobroma cacao HOM05D000029 ORTHO05D006111 2.4e-11 72.0 68 57.4
TAR713G0002 Trochodendron aralioides HOM05D000029 ORTHO05D006111 2.4e-11 72.0 38 86.8
VMungo1127G0104 Vigna mungo HOM05D000029 ORTHO05D006111 2.4e-11 72.0 68 55.9
Nn1g00950 Nelumbo nucifera HOM05D000029 ORTHO05D006111 3.2e-11 71.6 41 85.4
Atru.chr1.745_Atru.chr1.746 Acer truncatum HOM05D000029 ORTHO05D006111 4.1e-11 71.2 68 55.9
MSTRG.8831 Avicennia marina HOM05D000029 ORTHO05D006111 4.1e-11 71.2 41 82.9
Gohir.A12G197700 Gossypium hirsutum HOM05D000029 ORTHO05D006111 4.1e-11 71.2 41 82.9
Gohir.D12G200200 Gossypium hirsutum HOM05D000029 ORTHO05D006111 4.1e-11 71.2 41 82.9
Gorai.008G215400 Gossypium raimondii HOM05D000029 ORTHO05D006111 4.1e-11 71.2 41 82.9
Peaxi162Scf01876g00003 Petunia axillaris HOM05D000029 ORTHO05D006111 4.1e-11 71.2 41 82.9
Aqoxy5G03842_Aqoxy5G03843 Aquilegia oxysepala HOM05D000029 ORTHO05D006111 5.4e-11 70.9 41 80.5
CANSAT56G0513 Cannabis sativa HOM05D000029 ORTHO05D006111 5.4e-11 70.9 68 55.9
Lj1C978T3 Lonicera japonica HOM05D000029 ORTHO05D006111 5.4e-11 70.9 41 80.5
MD01G1181700 Malus domestica HOM05D000029 ORTHO05D006111 5.4e-11 70.9 41 82.9
Prupe.2G275500 Prunus persica HOM05D000029 ORTHO05D006111 5.4e-11 70.9 41 82.9
arahy.Tifrunner.gnm1.ann1.3NBS2E Arachis hypogaea HOM05D000029 ORTHO05D006111 7.1e-11 70.5 68 54.4
arahy.Tifrunner.gnm1.ann1.91FZ1V Arachis hypogaea HOM05D000029 ORTHO05D006111 7.1e-11 70.5 68 54.4
EL10Ac3g05857 Beta vulgaris HOM05D000029 ORTHO05D006111 7.1e-11 70.5 38 84.2
AUR62015433 Chenopodium quinoa HOM05D000029 ORTHO05D006111 7.1e-11 70.5 38 84.2
HanXRQChr14g0461311 Helianthus annuus HOM05D000029 ORTHO05D006111 7.1e-11 70.5 38 84.2
Medtr4g036575 Medicago truncatula HOM05D000029 ORTHO05D006111 7.1e-11 70.5 38 84.2
Nitab4.5_0001267g0130 Nicotiana tabacum HOM05D000029 ORTHO05D006111 7.1e-11 70.5 41 80.5
Nitab4.5_0012904g0010 Nicotiana tabacum HOM05D000029 ORTHO05D006111 7.1e-11 70.5 41 80.5
Potri.003G107600 Populus trichocarpa HOM05D000029 ORTHO05D006111 7.1e-11 70.5 68 55.9
TAR375G1068 Trochodendron aralioides HOM05D000029 ORTHO05D006111 7.1e-11 70.5 41 82.9
Ca_02787_v3 Cicer arietinum L. HOM05D000029 ORTHO05D006111 9.2e-11 70.1 41 80.5
Duzib068G0592 Durio zibethinus HOM05D000029 ORTHO05D006111 9.2e-11 70.1 68 55.9
Glyma.12G006300 Glycine max HOM05D000029 ORTHO05D006111 9.2e-11 70.1 68 54.4
Lsat_1_v5_gn_2_128681 Lactuca sativa HOM05D000029 ORTHO05D006111 9.2e-11 70.1 38 84.2
Lj3g0001095 Lotus japonicus HOM05D000029 ORTHO05D006111 9.2e-11 70.1 41 80.5
Psat6g142440 Pisum sativum HOM05D000029 ORTHO05D006111 9.2e-11 70.1 41 80.5
TWI39G0899 Tripterygium wilfordii HOM05D000029 ORTHO05D006111 9.2e-11 70.1 68 54.4
Cc02_g04420 Coffea canephora HOM05D000029 ORTHO05D006111 1.2e-10 69.7 41 80.5
Dinv16847 Davidia involucrata HOM05D000029 ORTHO05D006111 1.2e-10 69.7 68 54.4
GSVIVG01014037001 Vitis vinifera HOM05D000029 ORTHO05D006111 1.2e-10 69.7 41 80.5
Ah.07g207650 Amaranthus hybridus HOM05D000029 ORTHO05D006111 1.6e-10 69.3 38 81.6
Dinv06574 Davidia involucrata HOM05D000029 ORTHO05D006111 1.6e-10 69.3 41 80.5
ECA238G4106 Erigeron canadensis HOM05D000029 ORTHO05D006111 1.6e-10 69.3 38 81.6
Eucgr.K00167 Eucalyptus grandis HOM05D000029 ORTHO05D006111 1.6e-10 69.3 68 55.9
Glyma.09G230300 Glycine max HOM05D000029 ORTHO05D006111 1.6e-10 69.3 63 60.3
PSO063G7052 Papaver somniferum HOM05D000029 ORTHO05D006111 1.6e-10 69.3 38 84.2
PSO782G2005 Papaver somniferum HOM05D000029 ORTHO05D006111 1.6e-10 69.3 38 84.2
Phvul.011G007200 Phaseolus vulgaris HOM05D000029 ORTHO05D006111 1.6e-10 69.3 41 78.0
Gohir.A07G042100 Gossypium hirsutum HOM05D000029 ORTHO05D006111 2.1e-10 68.9 61 65.6
Sabra01G0097100 Salix brachista HOM05D000029 ORTHO05D006111 2.1e-10 68.9 68 55.9
Hund11837 Selenicereus undatus HOM05D000029 ORTHO05D006111 2.1e-10 68.9 68 54.4
AUR62002221 Chenopodium quinoa HOM05D000029 ORTHO05D006111 2.7e-10 68.6 38 81.6
Eucgr.A02902 Eucalyptus grandis HOM05D000029 ORTHO05D006111 2.7e-10 68.6 41 80.5
FvH4_7g27270 Fragaria vesca HOM05D000029 ORTHO05D006111 2.7e-10 68.6 41 78.0
FAN01G0450 Fragaria x ananassa HOM05D000029 ORTHO05D006111 2.7e-10 68.6 41 78.0
FAN03G2940 Fragaria x ananassa HOM05D000029 ORTHO05D006111 2.7e-10 68.6 41 78.0
FAN06G2406 Fragaria x ananassa HOM05D000029 ORTHO05D006111 2.7e-10 68.6 41 78.0
FAN06G4115 Fragaria x ananassa HOM05D000029 ORTHO05D006111 2.7e-10 68.6 41 78.0
MD07G1251900 Malus domestica HOM05D000029 ORTHO05D006111 2.7e-10 68.6 41 78.0
RcHm_v2.0_Chr1g0374101 Rosa chinensis HOM05D000029 ORTHO05D006111 2.7e-10 68.6 41 78.0
CiPaw.03G020500 Carya illinoinensis HOM05D000029 ORTHO05D006111 3.5e-10 68.2 41 78.0
Migut.F00488 Erythranthe guttata HOM05D000029 ORTHO05D006111 3.5e-10 68.2 41 78.0
Hma1.2p1_1132F.1_g260240 Hydrangea macrophylla HOM05D000029 ORTHO05D006111 3.5e-10 68.2 41 75.6
Lj8C43T13 Lonicera japonica HOM05D000029 ORTHO05D006111 3.5e-10 68.2 41 80.5
CAN.G48.44 Capsicum annuum HOM05D000029 ORTHO05D006111 4.6e-10 67.8 68 52.9
TWI14G1160 Tripterygium wilfordii HOM05D000029 ORTHO05D006111 4.6e-10 67.8 68 51.5
AL8G38170 Arabidopsis lyrata HOM05D000029 ORTHO05D006111 6.0e-10 67.4 38 81.6
AT5G61480 Arabidopsis thaliana HOM05D000029 ORTHO05D006111 6.0e-10 67.4 38 81.6
BcaC06g33242 Brassica carinata HOM05D000029 ORTHO05D006111 6.0e-10 67.4 38 81.6
A03p47080 Brassica napus HOM05D000029 ORTHO05D006111 6.0e-10 67.4 38 81.6
C07p45190 Brassica napus HOM05D000029 ORTHO05D006111 6.0e-10 67.4 38 81.6
BolC7t45042H Brassica oleracea HOM05D000029 ORTHO05D006111 6.0e-10 67.4 38 81.6
BraA03t13835Z Brassica rapa HOM05D000029 ORTHO05D006111 6.0e-10 67.4 38 81.6
Carub.0008s2217 Capsella rubella HOM05D000029 ORTHO05D006111 6.0e-10 67.4 38 81.6
CARHR275250 Cardamine hirsuta HOM05D000029 ORTHO05D006111 6.0e-10 67.4 38 81.6
ClCG07G016830 Citrullus lanatus HOM05D000029 ORTHO05D006111 6.0e-10 67.4 41 75.6
MELO3C017662.2 Cucumis melo HOM05D000029 ORTHO05D006111 6.0e-10 67.4 41 75.6
CsaV3_4G004030 Cucumis sativus L. HOM05D000029 ORTHO05D006111 6.0e-10 67.4 41 75.6
Thhalv10003570m.g Eutrema salsugineum HOM05D000029 ORTHO05D006111 6.0e-10 67.4 38 81.6
Sp2g24680 Schrenkiella parvula HOM05D000029 ORTHO05D006111 6.0e-10 67.4 38 81.6
TPR.G3640 Trifolium pratense HOM05D000029 ORTHO05D006111 6.0e-10 67.4 41 78.0
Cfa008146 Carpinus fangiana HOM05D000029 ORTHO05D006111 1.0e-09 66.6 38 78.9
Haze_13896 Corylus avellana HOM05D000029 ORTHO05D006111 1.0e-09 66.6 38 78.9
DCAR_018116 Daucus carota HOM05D000029 ORTHO05D006111 1.0e-09 66.6 41 78.0
PGR142G1963 Punica granatum HOM05D000029 ORTHO05D006111 1.0e-09 66.6 41 75.6
QL09p005274 Quercus lobata HOM05D000029 ORTHO05D006111 1.0e-09 66.6 41 75.6
PGSC0003DMG400018849 Solanum tuberosum HOM05D000029 ORTHO05D006111 1.0e-09 66.6 68 52.9
THA.LOC104818317 Tarenaya hassleriana HOM05D000029 ORTHO05D006111 1.0e-09 66.6 38 81.6
Aa31LG11G1930 Aethionema arabicum HOM05D000029 ORTHO05D006111 1.3e-09 66.2 38 78.9
MSTRG.8408 Avicennia marina HOM05D000029 ORTHO05D006111 1.3e-09 66.2 41 75.6
Lalb_Chr10g0092351 Lupinus albus HOM05D000029 ORTHO05D006111 1.3e-09 66.2 69 55.1
CiPaw.04G013300 Carya illinoinensis HOM05D000029 ORTHO05D006111 1.7e-09 65.9 66 53.0
Hma1.2p1_0432F.1_g151890 Hydrangea macrophylla HOM05D000029 ORTHO05D006111 1.7e-09 65.9 41 78.0
SGA_v2.0_scaffold2G01222 Striga asiatica HOM05D000029 ORTHO05D006111 1.7e-09 65.9 66 50.0
BcaC06g33153 Brassica carinata HOM05D000029 ORTHO05D006111 2.3e-09 65.5 38 78.9
Solyc03g093330.4 Solanum lycopersicum HOM05D000029 ORTHO05D006111 2.3e-09 65.5 68 52.9
PGR042G2807 Punica granatum HOM05D000029 ORTHO05D006111 3.0e-09 65.1 68 48.5
FAN10G2044 Fragaria x ananassa HOM05D000029 ORTHO05D006111 3.9e-09 64.7 41 75.6
Sc25g0000020 Simmondsia chinensis HOM05D000029 ORTHO05D006111 3.9e-09 64.7 41 73.2
Oeu017785.2 Olea europaea HOM05D000029 ORTHO05D006111 5.1e-09 64.3 68 50.0
Sopen03g024120 Solanum pennellii HOM05D000029 ORTHO05D006111 6.6e-09 63.9 68 51.5
Peaxi162Scf00167g00611 Petunia axillaris HOM05D000029 ORTHO05D006111 8.7e-09 63.5 38 76.3
HanXRQChr13g0420541 Helianthus annuus HOM05D000029 ORTHO05D006111 1.1e-08 63.2 41 78.0
Lsat_1_v5_gn_8_10241 Lactuca sativa HOM05D000029 ORTHO05D006111 1.1e-08 63.2 55 61.8
MSTRG.27204 Avicennia marina HOM05D000029 ORTHO05D006111 1.9e-08 62.4 40 72.5
Sopen05g030100 Solanum pennellii HOM05D000029 ORTHO05D006111 2.5e-08 62.0 38 73.7
PGSC0003DMG400007234 Solanum tuberosum HOM05D000029 ORTHO05D006111 3.3e-08 61.6 57 56.1
CAN.G937.3 Capsicum annuum HOM05D000029 ORTHO05D006111 4.3e-08 61.2 38 73.7
CDE11G0883 Ceratophyllum demersum HOM05D000029 ORTHO05D006111 4.3e-08 61.2 38 73.7
ATR0057G078 Amborella trichopoda HOM05D000029 ORTHO05D006111 9.6e-08 60.1 38 71.1
ECA233G5029 Erigeron canadensis HOM05D000029 ORTHO05D006111 1.2e-07 59.7 38 76.3
DCAR_014617 Daucus carota HOM05D000029 ORTHO05D006111 1.6e-07 59.3 41 70.7
Sed0020545 Sechium edule HOM05D000029 ORTHO05D006111 2.1e-07 58.9 68 45.6
SEGI_31478 Sequoiadendron giganteum HOM05D000029 ORTHO05D006111 4.7e-07 57.8 62 58.1
THA.LOC104811528 Tarenaya hassleriana HOM05D000029 ORTHO05D006111 8.1e-07 57.0 69 46.4
SEGI_13264 Sequoiadendron giganteum HOM05D000029 ORTHO05D006111 1.1e-06 56.6 41 68.3
SalBow5G2785 Salvia bowleyana HOM05D000029 ORTHO05D006111 3.1e-06 55.1 41 61.0


User provided reference genes

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