Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g29105 Nelumbo nucifera HOM05D006293 ORTHO05D007971 5.9e-180 634.0 308 100.0
TAR376G0811 Trochodendron aralioides HOM05D006293 ORTHO05D007971 1.5e-130 469.9 308 73.7
Nn1g05912 Nelumbo nucifera HOM05D006293 ORTHO05D007971 1.9e-125 453.0 310 72.9
TAR628G0693 Trochodendron aralioides HOM05D006293 ORTHO05D007971 8.6e-123 444.1 316 69.6
QL11p047722 Quercus lobata HOM05D006293 ORTHO05D007971 2.9e-118 429.1 337 62.9
TAR536G0014 Trochodendron aralioides HOM05D006293 ORTHO05D007971 6.4e-118 427.9 308 68.2
Cfa005191 Carpinus fangiana HOM05D006293 ORTHO05D007971 2.1e-116 422.9 330 63.3
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 2.7e-116 422.5 321 66.7
Haze_02189 Corylus avellana HOM05D006293 ORTHO05D007971 1.2e-113 413.7 323 63.2
GSVIVG01024071001 Vitis vinifera HOM05D006293 ORTHO05D007971 5.2e-112 408.3 315 63.8
FAN15G0431 Fragaria x ananassa HOM05D006293 ORTHO05D007971 9.0e-112 407.5 335 60.0
Rhsim11G0188600 Rhododendron simsii HOM05D006293 ORTHO05D007971 1.7e-110 403.3 341 60.4
Cc02_g16450 Coffea canephora HOM05D006293 ORTHO05D007971 1.2e-108 397.1 309 63.4
Prupe.8G161400 Prunus persica HOM05D006293 ORTHO05D007971 1.2e-108 397.1 332 59.3
vmacro02255 Vaccinium macrocarpon HOM05D006293 ORTHO05D007971 1.2e-108 397.1 327 61.2
Glyma.06G004900 Glycine max HOM05D006293 ORTHO05D007971 4.6e-108 395.2 323 60.7
Potri.004G169200 Populus trichocarpa HOM05D006293 ORTHO05D007971 7.8e-108 394.4 320 60.6
VMungo1309G1166 Vigna mungo HOM05D006293 ORTHO05D007971 7.8e-108 394.4 326 61.0
FAN24G1019 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.3e-107 393.7 359 56.0
Phvul.009G025500 Phaseolus vulgaris HOM05D006293 ORTHO05D007971 1.7e-107 393.3 319 61.8
FAN27G2989 Fragaria x ananassa HOM05D006293 ORTHO05D007971 3.9e-107 392.1 355 57.2
Glyma.04G005100 Glycine max HOM05D006293 ORTHO05D007971 3.9e-107 392.1 341 58.1
CSS0030950 Camellia sinensis var. sinensis HOM05D006293 ORTHO05D007971 5.1e-107 391.7 314 63.1
CANSAT25G1913 Cannabis sativa HOM05D006293 ORTHO05D007971 8.7e-107 391.0 342 56.7
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 8.7e-107 391.0 312 62.2
FvH4_2g01740 Fragaria vesca HOM05D006293 ORTHO05D007971 1.5e-106 390.2 362 55.5
Solyc01g111210.3 Solanum lycopersicum HOM05D001375 ORTHO05D001222 1.5e-106 390.2 309 59.2
Peaxi162Scf00362g00956 Petunia axillaris HOM05D001375 ORTHO05D001222 1.9e-106 389.8 315 61.0
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 3.3e-106 389.0 326 59.2
Oeu060421.1 Olea europaea HOM05D006293 ORTHO05D007971 4.3e-106 388.7 323 60.4
FAN20G1949 Fragaria x ananassa HOM05D006293 ORTHO05D007971 5.6e-106 388.3 349 56.4
Sopen01g053260 Solanum pennellii HOM05D006293 ORTHO05D007971 5.6e-106 388.3 310 59.0
CiPaw.05G077900 Carya illinoinensis HOM05D006293 ORTHO05D007971 4.8e-105 385.2 300 63.0
RcHm_v2.0_Chr6g0244771 Rosa chinensis HOM05D006293 ORTHO05D007971 4.8e-105 385.2 348 56.6
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 8.1e-105 384.4 313 60.4
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 8.1e-105 384.4 313 60.4
Ca_15314_v3 Cicer arietinum L. HOM05D006293 ORTHO05D007971 1.4e-104 383.6 320 58.1
Manes.11G090800 Manihot esculenta HOM05D006293 ORTHO05D007971 2.4e-104 382.9 318 59.4
Rhsim11G0188500 Rhododendron simsii HOM05D006293 ORTHO05D007971 2.4e-104 382.9 384 52.9
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 3.1e-104 382.5 309 59.9
Eucgr.G01761 Eucalyptus grandis HOM05D006293 ORTHO05D007971 4.0e-104 382.1 327 58.4
ClCG02G011620 Citrullus lanatus HOM05D006293 ORTHO05D007971 1.7e-102 376.7 328 59.5
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 2.9e-102 375.9 323 58.5
MD05G1116900 Malus domestica HOM05D006293 ORTHO05D007971 4.9e-102 375.2 346 55.5
PGSC0003DMG400001627 Solanum tuberosum HOM05D006293 ORTHO05D007971 1.4e-101 373.6 319 56.7
CAN.G588.32 Capsicum annuum HOM05D006293 ORTHO05D007971 2.7e-100 369.4 325 56.9
Oeu014457.2 Olea europaea HOM05D006293 ORTHO05D007971 2.7e-100 369.4 321 58.6
Lj1g0023631 Lotus japonicus HOM05D006293 ORTHO05D007971 4.6e-100 368.6 322 58.4
Medtr3g117760 Medicago truncatula HOM05D006293 ORTHO05D007971 4.6e-100 368.6 310 59.0
Duzib132G0283 Durio zibethinus HOM05D006293 ORTHO05D007971 6.0e-100 368.2 324 58.3
MSTRG.16884 Avicennia marina HOM05D006293 ORTHO05D007971 7.9e-100 367.9 347 54.5
Ciclev10028711m.g Citrus clementina HOM05D006293 ORTHO05D007971 7.9e-100 367.9 361 52.4
TWI31G0553 Tripterygium wilfordii HOM05D006293 ORTHO05D007971 1.3e-99 367.1 306 60.1
Migut.B00115 Erythranthe guttata HOM05D006293 ORTHO05D007971 8.1e-97 357.8 324 55.2
TPR.G38570 Trifolium pratense HOM05D006293 ORTHO05D007971 1.4e-96 357.1 320 57.8
ATR0810G191 Amborella trichopoda HOM05D006293 ORTHO05D007971 5.3e-96 355.1 302 57.9
Dinv41970 Davidia involucrata HOM05D006293 ORTHO05D007971 2.0e-95 353.2 253 67.6
Lsat_1_v5_gn_8_126000 Lactuca sativa HOM05D006293 ORTHO05D007971 7.6e-95 351.3 307 57.3
Cpa.g.sc37.182 Carica papaya HOM05D006293 ORTHO05D007971 1.3e-94 350.5 318 56.3
HanXRQChr17g0557851 Helianthus annuus HOM05D006293 ORTHO05D007971 2.9e-94 349.4 319 54.5
Lalb_Chr23g0265081 Lupinus albus HOM05D006293 ORTHO05D007971 6.4e-94 348.2 330 56.4
Lj5C183T16 Lonicera japonica HOM05D006293 ORTHO05D007971 2.4e-93 346.3 329 55.3
Nitab4.5_0000980g0060 Nicotiana tabacum HOM05D001375 ORTHO05D001222 4.6e-92 342.0 317 54.9
Hund06410 Selenicereus undatus HOM05D006293 ORTHO05D007971 4.6e-92 342.0 334 51.8
Sed0004865 Sechium edule HOM05D006293 ORTHO05D007971 6.0e-92 341.7 328 53.7
PSO170G2363 Papaver somniferum HOM05D006293 ORTHO05D007971 1.8e-91 340.1 353 53.0
Psat5g003040 Pisum sativum HOM05D006293 ORTHO05D007971 5.6e-90 335.1 329 53.2
PSO700G0292 Papaver somniferum HOM05D006293 ORTHO05D007971 4.8e-89 332.0 304 57.6
THA.LOC104804336 Tarenaya hassleriana HOM05D006293 ORTHO05D007971 9.0e-88 327.8 315 53.0
EL10Ac9g21428 Beta vulgaris HOM05D006293 ORTHO05D007971 3.4e-87 325.9 358 48.0
Aqoxy5G00988 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 1.7e-86 323.6 294 58.8
BcaC04g23011 Brassica carinata HOM05D006293 ORTHO05D007971 1.1e-85 320.9 347 49.0
AUR62010081 Chenopodium quinoa HOM05D006293 ORTHO05D007971 1.4e-85 320.5 330 50.6
C09p13060 Brassica napus HOM05D006293 ORTHO05D007971 4.2e-85 318.9 347 48.7
AUR62013075 Chenopodium quinoa HOM05D006293 ORTHO05D007971 4.2e-85 318.9 334 50.0
BolC9t54199H Brassica oleracea HOM05D006293 ORTHO05D007971 9.3e-85 317.8 347 48.7
MBI05_g47219_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.2e-84 317.4 309 54.4
MBI05_g07501_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.6e-84 317.0 298 55.4
MELO3C020791.2 Cucumis melo HOM05D006293 ORTHO05D007971 2.1e-84 316.6 321 52.3
CARHR106850 Cardamine hirsuta HOM05D006293 ORTHO05D007971 2.7e-84 316.2 331 51.7
ECA233G0605 Erigeron canadensis HOM05D001375 ORTHO05D001222 1.3e-83 313.9 319 53.0
Sc14g0002130 Simmondsia chinensis HOM05D006293 ORTHO05D007971 5.1e-83 312.0 316 52.5
DCAR_003705 Daucus carota HOM05D006293 ORTHO05D007971 1.1e-82 310.8 320 49.7
AL3G49260 Arabidopsis lyrata HOM05D006293 ORTHO05D007971 2.5e-82 309.7 326 50.0
Ah.01g022670 Amaranthus hybridus HOM05D006293 ORTHO05D007971 7.4e-82 308.1 321 51.1
MBI05_g30117_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.3e-81 307.4 298 53.4
AT2G16630 Arabidopsis thaliana HOM05D006293 ORTHO05D007971 3.7e-81 305.8 356 46.6
Carub.0003s3038 Capsella rubella HOM05D006293 ORTHO05D007971 3.7e-81 305.8 341 48.7
BraA09t36749Z Brassica rapa HOM05D006293 ORTHO05D007971 8.2e-81 304.7 345 47.5
A09p11050 Brassica napus HOM05D006293 ORTHO05D007971 1.8e-80 303.5 345 47.5
BcaC06g36161 Brassica carinata HOM05D006293 ORTHO05D007971 9.0e-80 301.2 345 47.0
A07p04460 Brassica napus HOM05D006293 ORTHO05D007971 9.0e-80 301.2 345 47.2
C07p07090 Brassica napus HOM05D006293 ORTHO05D007971 9.0e-80 301.2 345 47.0
BolC7t41128H Brassica oleracea HOM05D006293 ORTHO05D007971 9.0e-80 301.2 345 47.0
BraA07t28238Z Brassica rapa HOM05D006293 ORTHO05D007971 1.2e-79 300.8 345 47.2
Sp3g30120 Schrenkiella parvula HOM05D006293 ORTHO05D007971 2.0e-79 300.1 377 44.0
BcaB07g31757 Brassica carinata HOM05D006293 ORTHO05D007971 3.4e-79 299.3 340 47.6
Aa31LG8G13900 Aethionema arabicum HOM05D006293 ORTHO05D007971 1.2e-76 290.8 329 48.0
MBI05_g48109_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 2.1e-76 290.0 298 53.4
Thhalv10022734m.g Eutrema salsugineum HOM05D006293 ORTHO05D007971 2.5e-74 283.1 383 42.3
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 9.7e-74 281.2 308 49.0
Aqoxy1G01171 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 1.7e-73 280.4 261 56.7
CDE05G1002 Ceratophyllum demersum HOM05D006293 ORTHO05D007971 2.2e-73 280.0 298 51.3
CsaV3_2G015780 Cucumis sativus L. HOM05D006293 ORTHO05D007971 8.2e-73 278.1 336 45.2
HanXRQChr10g0298941 Helianthus annuus HOM05D006293 ORTHO05D007971 5.3e-72 275.4 328 45.4
HPP92_013009 Vanilla planifolia HOM05D006293 ORTHO05D007971 4.2e-69 265.8 286 48.6
unitig_0.g827 Utricularia gibba HOM05D006293 ORTHO05D007971 2.7e-68 263.1 318 47.2
SEGI_19356 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 1.1e-61 241.1 339 42.5
unitig_0.g43 Utricularia gibba HOM05D006293 ORTHO05D007971 2.5e-61 240.0 306 46.1
PGR042G0330 Punica granatum HOM05D006293 ORTHO05D007971 2.6e-58 229.9 391 37.9
BcaB03g16385 Brassica carinata HOM05D006293 ORTHO05D007971 5.9e-55 218.8 346 39.0
MSTRG.20014 Avicennia marina HOM05D006293 ORTHO05D007971 4.2e-53 212.6 197 55.3
MD10G1120000 Malus domestica HOM05D006293 ORTHO05D007971 4.2e-53 212.6 130 74.6
MBI05_g21530_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 3.3e-50 203.0 216 51.4
Nitab4.5_0000283g0050 Nicotiana tabacum HOM05D001375 ORTHO05D001222 9.1e-48 194.9 310 38.4
SEGI_14996 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 1.2e-47 194.5 321 38.3
MD10G1120100 Malus domestica HOM05D006293 ORTHO05D007971 2.0e-47 193.7 129 64.3
Gohir.1Z049391 Gossypium hirsutum HOM05D006293 ORTHO05D007971 8.3e-41 171.8 152 55.9
Aqoxy6G00177 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 8.0e-36 155.2 313 35.1
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 1.8e-32 144.1 166 44.0
Pp3c1_27500 Physcomitrium patens HOM05D006293 ORTHO05D007971 5.6e-29 132.5 302 30.8
Pp3c14_8250 Physcomitrium patens HOM05D006293 ORTHO05D007971 7.3e-29 132.1 290 31.7
SMO223G0025 Selaginella moellendorffii HOM05D006293 ORTHO05D007971 7.3e-29 132.1 309 32.0
Zm00001eb210030 Zea mays HOM05D006293 ORTHO05D007971 8.0e-28 128.6 143 44.8
SEGI_23181 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 2.8e-20 103.6 220 34.1
MBI05_g31848_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 3.6e-20 103.2 91 53.8
Actinidia00600 Actinidia chinensis HOM05D006293 ORTHO05D007971 1.8e-11 74.3 165 34.5
SGA_v2.0_scaffold9G04828 Striga asiatica HOM05D006293 ORTHO05D007971 2.6e-10 70.5 51 60.8
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 7.5e-10 68.9 88 42.0
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 1.6e-07 61.2 141 29.1
Mapoly0022s0141 Marchantia polymorpha HOM05D021038 ORTHO05D009018 6.0e-07 59.3 115 33.9
Potri.002G060800 Populus trichocarpa HOM05D003750 ORTHO05D004337 1.3e-06 58.2 148 36.5
Aqoxy3G03730 Aquilegia oxysepala HOM05D003328 ORTHO05D003722 8.6e-06 55.5 143 25.2


User provided reference genes

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