Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g28991 Nelumbo nucifera HOM05D006522 ORTHO05D008183 2.0e-141 505.8 250 100.0
TAR376G0333 Trochodendron aralioides HOM05D006522 ORTHO05D008183 2.6e-101 372.5 280 70.7
PGR004G1063 Punica granatum HOM05D006522 ORTHO05D008183 1.8e-94 349.7 251 70.9
Atru.chr4.281 Acer truncatum HOM05D006522 ORTHO05D008183 7.6e-93 344.4 249 70.3
CSS0003121 Camellia sinensis var. sinensis HOM05D006522 ORTHO05D008183 7.6e-93 344.4 286 64.7
Duzib187G0580 Durio zibethinus HOM05D006522 ORTHO05D008183 2.2e-92 342.8 272 68.0
Thecc.01G107900 Theobroma cacao HOM05D006522 ORTHO05D008183 2.9e-92 342.4 272 67.6
Gohir.D03G044300 Gossypium hirsutum HOM05D006522 ORTHO05D008183 8.4e-92 340.9 280 66.4
Gohir.A02G132900 Gossypium hirsutum HOM05D006522 ORTHO05D008183 1.1e-91 340.5 280 66.1
CiPaw.04G095200 Carya illinoinensis HOM05D006522 ORTHO05D008183 1.2e-90 337.0 272 65.8
Sabra05G0065900 Salix brachista HOM05D006522 ORTHO05D008183 1.6e-90 336.7 251 69.7
Hma1.2p1_0070F.1_g037620 Hydrangea macrophylla HOM05D006522 ORTHO05D008183 3.5e-90 335.5 255 68.6
COL.COLO4_11046 Corchorus olitorius HOM05D006522 ORTHO05D008183 6.6e-89 331.3 209 76.6
Potri.005G080300 Populus trichocarpa HOM05D006522 ORTHO05D008183 8.6e-89 330.9 273 65.2
GSVIVG01022189001 Vitis vinifera HOM05D006522 ORTHO05D008183 5.6e-88 328.2 305 59.3
Ciclev10027591m.g Citrus clementina HOM05D006522 ORTHO05D008183 9.6e-88 327.4 288 63.2
Dinv16321 Davidia involucrata HOM05D006522 ORTHO05D008183 3.6e-87 325.5 262 67.2
CANSAT01G1323 Cannabis sativa HOM05D006522 ORTHO05D008183 8.1e-87 324.3 274 63.1
PSO675G0908 Papaver somniferum HOM05D006522 ORTHO05D008183 8.1e-87 324.3 275 63.6
Manes.13G077900 Manihot esculenta HOM05D006522 ORTHO05D008183 1.8e-86 323.2 303 59.4
Hma1.2p1_0070F.1_g037610 Hydrangea macrophylla HOM05D006522 ORTHO05D008183 2.4e-86 322.8 277 63.2
PSO541G5899 Papaver somniferum HOM05D006522 ORTHO05D008183 5.2e-86 321.6 275 63.6
Gorai.003G045400 Gossypium raimondii HOM05D006522 ORTHO05D008183 8.9e-86 320.9 270 65.6
THA.LOC104819310 Tarenaya hassleriana HOM05D006522 ORTHO05D008183 1.5e-85 320.1 273 64.5
Eucgr.I00376 Eucalyptus grandis HOM05D006522 ORTHO05D008183 2.0e-85 319.7 279 62.7
Sp6g33330 Schrenkiella parvula HOM05D006522 ORTHO05D008183 3.4e-85 318.9 271 62.0
TWI53G0226 Tripterygium wilfordii HOM05D006522 ORTHO05D008183 5.8e-85 318.2 272 64.0
Thhalv10014396m.g Eutrema salsugineum HOM05D006522 ORTHO05D008183 7.6e-85 317.8 271 62.0
SalBow3G1116 Salvia bowleyana HOM05D006522 ORTHO05D008183 1.7e-84 316.6 222 72.1
MD15G1329600 Malus domestica HOM05D006522 ORTHO05D008183 4.9e-84 315.1 275 61.8
Actinidia28878 Actinidia chinensis HOM05D001075 ORTHO05D008183 1.1e-83 313.9 265 64.2
FvH4_1g21690 Fragaria vesca HOM05D006522 ORTHO05D008183 1.9e-83 313.2 271 62.4
Rhsim10G0156200 Rhododendron simsii HOM05D006522 ORTHO05D008183 2.4e-83 312.8 354 50.8
RcHm_v2.0_Chr2g0115571 Rosa chinensis HOM05D006522 ORTHO05D008183 2.4e-83 312.8 273 63.0
Carub.0006s0853 Capsella rubella HOM05D006522 ORTHO05D008183 5.4e-83 311.6 271 59.8
ATR0564G484 Amborella trichopoda HOM05D006522 ORTHO05D008183 7.1e-83 311.2 274 59.1
AL6G20520 Arabidopsis lyrata HOM05D006522 ORTHO05D008183 1.6e-82 310.1 270 61.1
Sed0017006 Sechium edule HOM05D006522 ORTHO05D008183 2.7e-82 309.3 269 61.3
Sc23g0003650 Simmondsia chinensis HOM05D006522 ORTHO05D008183 3.5e-82 308.9 270 60.4
HPP92_027257 Vanilla planifolia HOM05D006522 ORTHO05D008183 4.6e-82 308.5 274 61.7
Aqoxy6G00537 Aquilegia oxysepala HOM05D006522 ORTHO05D008183 7.8e-82 307.8 189 79.9
FAN19G2878 Fragaria x ananassa HOM05D006522 ORTHO05D008183 7.8e-82 307.8 296 58.1
ECA238G0371 Erigeron canadensis HOM05D006522 ORTHO05D008183 1.3e-81 307.0 273 61.5
QL06p050567 Quercus lobata HOM05D006522 ORTHO05D008183 1.3e-81 307.0 321 55.1
BraA10t44795Z Brassica rapa HOM05D006522 ORTHO05D008183 8.7e-81 304.3 269 59.9
Aa31LG3G17070 Aethionema arabicum HOM05D006522 ORTHO05D008183 2.5e-80 302.8 272 60.3
Cc00_g21690 Coffea canephora HOM05D006522 ORTHO05D008183 4.3e-80 302.0 297 58.6
Lj4g0021245 Lotus japonicus HOM05D006522 ORTHO05D008183 7.3e-80 301.2 275 58.2
HanXRQChr14g0446011 Helianthus annuus HOM05D006522 ORTHO05D008183 9.6e-80 300.8 277 59.9
Phvul.002G262800 Phaseolus vulgaris HOM05D006522 ORTHO05D008183 1.6e-79 300.1 274 58.8
BcaC04g19347 Brassica carinata HOM05D006522 ORTHO05D008183 2.1e-79 299.7 272 58.8
BolC9t59510H Brassica oleracea HOM05D006522 ORTHO05D008183 2.1e-79 299.7 272 58.8
C09p67500 Brassica napus HOM05D006522 ORTHO05D008183 2.8e-79 299.3 272 58.8
Medtr8g091510 Medicago truncatula HOM05D006522 ORTHO05D008183 4.8e-79 298.5 273 57.9
EL10Ac1g00879 Beta vulgaris HOM05D006522 ORTHO05D008183 8.1e-79 297.7 275 59.3
Ca_17709_v3 Cicer arietinum L. HOM05D006522 ORTHO05D008183 1.1e-78 297.4 282 56.0
VMungo0251G3519 Vigna mungo HOM05D006522 ORTHO05D008183 1.1e-78 297.4 271 58.7
Prupe.6G178600 Prunus persica HOM05D006522 ORTHO05D008183 1.8e-78 296.6 257 62.3
Os03g0195200 Oryza sativa ssp. japonica HOM05D006522 ORTHO05D008183 9.0e-78 294.3 274 60.6
Lalb_Chr12g0203641 Lupinus albus HOM05D006522 ORTHO05D008183 1.2e-77 293.9 273 58.6
Nitab4.5_0001027g0010 Nicotiana tabacum HOM05D006522 ORTHO05D008183 1.2e-77 293.9 274 59.1
Glyma.05G181800 Glycine max HOM05D006522 ORTHO05D008183 2.0e-77 293.1 276 58.0
Nitab4.5_0003396g0010 Nicotiana tabacum HOM05D006522 ORTHO05D008183 2.6e-77 292.7 273 58.6
Sopen05g033820 Solanum pennellii HOM05D006522 ORTHO05D008183 2.6e-77 292.7 275 58.5
PGSC0003DMG400023383 Solanum tuberosum HOM05D006522 ORTHO05D008183 4.5e-77 292.0 275 58.5
arahy.Tifrunner.gnm1.ann1.8IYW0J Arachis hypogaea HOM05D006522 ORTHO05D008183 5.8e-77 291.6 284 56.7
Glyma.08G139500 Glycine max HOM05D006522 ORTHO05D008183 7.6e-77 291.2 279 58.1
Psat7g053400 Pisum sativum HOM05D006522 ORTHO05D008183 7.6e-77 291.2 272 56.2
AUR62013645 Chenopodium quinoa HOM05D006522 ORTHO05D008183 1.3e-76 290.4 276 58.0
BcaB08g37142 Brassica carinata HOM05D006522 ORTHO05D008183 1.7e-76 290.0 260 59.6
CAN.G1550.13 Capsicum annuum HOM05D006522 ORTHO05D008183 1.7e-76 290.0 275 58.9
MELO3C017578.2 Cucumis melo HOM05D006522 ORTHO05D008183 2.9e-76 289.3 312 54.8
CsaV3_UNG186480 Cucumis sativus L. HOM05D006522 ORTHO05D008183 2.9e-76 289.3 192 73.4
vmacro12933 Vaccinium macrocarpon HOM05D006522 ORTHO05D008183 1.4e-75 287.0 224 64.3
FAN26G1180 Fragaria x ananassa HOM05D006522 ORTHO05D008183 4.2e-75 285.4 333 51.4
Zm00001eb401110 Zea mays HOM05D006522 ORTHO05D008183 5.4e-75 285.0 264 59.1
Migut.H02394 Erythranthe guttata HOM05D006522 ORTHO05D008183 9.3e-75 284.3 238 62.6
arahy.Tifrunner.gnm1.ann1.2EL0K0 Arachis hypogaea HOM05D006522 ORTHO05D008183 2.7e-74 282.7 209 68.9
MSTRG.23326 Avicennia marina HOM05D006522 ORTHO05D008183 6.0e-74 281.6 272 57.4
Ah.05g174330 Amaranthus hybridus HOM05D006522 ORTHO05D008183 1.0e-73 280.8 276 58.3
CARHR203220 Cardamine hirsuta HOM05D006522 ORTHO05D008183 1.3e-73 280.4 188 71.3
TPR.G2232 Trifolium pratense HOM05D006522 ORTHO05D008183 2.3e-73 279.6 268 55.6
AUR62004203 Chenopodium quinoa HOM05D006522 ORTHO05D008183 6.7e-73 278.1 270 55.6
Cfa002723 Carpinus fangiana HOM05D006522 ORTHO05D008183 8.7e-73 277.7 181 73.5
SGA_v2.0_scaffold2G01317 Striga asiatica HOM05D006522 ORTHO05D008183 2.8e-71 272.7 233 61.4
Lj2A556G28 Lonicera japonica HOM05D006522 ORTHO05D008183 1.1e-70 270.8 187 73.3
unitig_736.g22572 Utricularia gibba HOM05D006522 ORTHO05D008183 2.1e-66 256.5 219 59.8
ClCG09G014260 Citrullus lanatus HOM05D006522 ORTHO05D008183 1.5e-64 250.4 264 54.9
Oeu028389.1 Olea europaea HOM05D006522 ORTHO05D008183 7.4e-64 248.1 191 66.5
Psat7g089320 Pisum sativum HOM05D006522 ORTHO05D008183 9.6e-64 247.7 198 60.1
A10p27440 Brassica napus HOM05D006522 ORTHO05D008183 5.3e-62 241.9 195 64.6
BcaB08g37140 Brassica carinata HOM05D006522 ORTHO05D008183 4.9e-60 235.3 139 77.7
AUR62013648 Chenopodium quinoa HOM05D006522 ORTHO05D008183 1.4e-59 233.8 240 52.5
AT5G10070 Arabidopsis thaliana HOM05D006522 ORTHO05D008183 2.5e-59 233.0 193 63.2
ECA238G2930 Erigeron canadensis HOM05D006522 ORTHO05D008183 3.0e-57 226.1 193 62.2
Mapoly0168s0016 Marchantia polymorpha HOM05D006522 ORTHO05D008183 2.5e-56 223.0 273 46.9
Lsat_1_v5_gn_2_67761 Lactuca sativa HOM05D006522 ORTHO05D008183 4.8e-55 218.8 259 51.7
SMO139G0021 Selaginella moellendorffii HOM05D006522 ORTHO05D008183 3.1e-54 216.1 189 54.0
Pp3c17_17150 Physcomitrium patens HOM05D006522 ORTHO05D008183 1.2e-53 214.2 189 53.4
Haze_24999 Corylus avellana HOM05D006522 ORTHO05D008183 1.6e-47 193.7 171 63.2
MD01G1023100 Malus domestica HOM05D006522 ORTHO05D008183 1.1e-46 191.0 136 71.3
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 4.1e-46 189.1 290 39.3
CDE10G0337 Ceratophyllum demersum HOM05D006522 ORTHO05D008183 3.4e-45 186.0 187 56.7
Cre17.g698950 Chlamydomonas reinhardtii HOM05D006522 ORTHO05D008183 7.2e-43 178.3 141 58.2
Haze_26963 Corylus avellana HOM05D006522 ORTHO05D008183 1.6e-42 177.2 173 48.6
MCO11G860 Micromonas commoda HOM05D006522 ORTHO05D008183 1.6e-42 177.2 189 46.6
PRCOL_00002914 Prasinoderma coloniale HOM05D006522 ORTHO05D008183 6.5e-36 155.2 174 47.7
Eucgr.L02916 Eucalyptus grandis HOM05D006522 ORTHO05D008183 4.5e-29 132.5 107 64.5
AUR62004200 Chenopodium quinoa HOM05D006522 ORTHO05D008183 1.5e-27 127.5 216 39.4
Cfa022135 Carpinus fangiana HOM05D006522 ORTHO05D008183 8.0e-26 121.7 209 35.9
SEGI_11019 Sequoiadendron giganteum HOM05D006522 ORTHO05D008183 6.3e-23 112.1 56 89.3
SHI11627 Sapria himalayana HOM05D006522 ORTHO05D008183 5.9e-21 105.5 100 57.0
SEGI_36547 Sequoiadendron giganteum HOM05D006522 ORTHO05D008183 5.5e-19 99.0 87 56.3
COL.COLO4_11047 Corchorus olitorius HOM05D006522 ORTHO05D008183 1.8e-17 94.0 101 49.5
SHI11626 Sapria himalayana HOM05D006522 ORTHO05D008183 1.8e-17 94.0 59 71.2
MD01G1023200 Malus domestica HOM05D006522 ORTHO05D008183 4.0e-17 92.8 59 72.9
Potri.007G087000 Populus trichocarpa HOM05D006522 ORTHO05D008183 4.4e-16 89.4 79 57.0
AagrBONN_evm.TU.Sc2ySwM_368.3361 Anthoceros agrestis HOM05D006522 ORTHO05D008183 2.4e-14 83.6 90 46.7
DCAR_011494 Daucus carota HOM05D006522 ORTHO05D008183 4.9e-07 59.3 67 56.7


User provided reference genes

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