Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g28912 Nelumbo nucifera HOM05D003543 ORTHO05D004112 1.5e-34 149.1 80 100.0
Nn2g11431 Nelumbo nucifera HOM05D001865 ORTHO05D004112 3.0e-27 124.8 75 88.0
Nn3g17714 Nelumbo nucifera HOM05D003543 ORTHO05D004112 9.7e-26 119.8 79 84.8
Nn3g16767 Nelumbo nucifera HOM05D019617 ORTHO05D017182 2.2e-25 118.6 81 84.0
THA.LOC104813330 Tarenaya hassleriana HOM05D003543 ORTHO05D004112 6.9e-24 113.6 80 81.2
BcaC06g33483 Brassica carinata HOM05D003543 ORTHO05D004112 9.1e-24 113.2 80 78.8
CDE05G3523 Ceratophyllum demersum HOM05D003543 ORTHO05D004112 2.0e-23 112.1 80 77.5
Potri.006G015100 Populus trichocarpa HOM05D003543 ORTHO05D004112 4.2e-21 104.4 76 77.6
Nn5g30699 Nelumbo nucifera HOM05D003543 ORTHO05D004112 5.5e-21 104.0 80 72.5
MELO3C000051.2 Cucumis melo HOM05D003543 ORTHO05D004112 1.2e-20 102.8 79 72.2
Nn1g00499 Nelumbo nucifera HOM05D003543 ORTHO05D004112 1.6e-20 102.4 76 77.6
AUR62012814 Chenopodium quinoa HOM05D003543 ORTHO05D004112 7.9e-20 100.1 80 68.8
AUR62021839 Chenopodium quinoa HOM05D003543 ORTHO05D004112 7.9e-20 100.1 80 68.8
Hund23399 Selenicereus undatus HOM05D003543 ORTHO05D004112 6.7e-19 97.1 80 67.5
ECA234G1693 Erigeron canadensis HOM05D003543 ORTHO05D004112 2.2e-17 92.0 83 67.5
HanXRQChr17g0559481 Helianthus annuus HOM05D003543 ORTHO05D004112 2.8e-17 91.7 83 65.1
Nn1g00888 Nelumbo nucifera HOM05D003543 ORTHO05D004112 3.1e-16 88.2 80 66.2
Cc09_g00700 Coffea canephora HOM05D003543 ORTHO05D004112 1.6e-15 85.9 54 81.5
SGA_v2.0_scaffold89G27513 Striga asiatica HOM05D003543 ORTHO05D004112 2.6e-15 85.1 79 59.5
Oeu022953.1 Olea europaea HOM05D003543 ORTHO05D004112 4.5e-15 84.3 53 79.2
QL05p068721 Quercus lobata HOM05D003543 ORTHO05D004112 4.5e-15 84.3 53 79.2
QL05p069094 Quercus lobata HOM05D003543 ORTHO05D004112 4.5e-15 84.3 53 79.2
Prupe.4G008500 Prunus persica HOM05D003543 ORTHO05D004112 7.7e-15 83.6 48 87.5
Cfa000083 Carpinus fangiana HOM05D003543 ORTHO05D004112 1.0e-14 83.2 50 84.0
Haze_06957 Corylus avellana HOM05D003543 ORTHO05D004112 1.0e-14 83.2 50 84.0
HanXRQChr16g0517001 Helianthus annuus HOM05D003543 ORTHO05D004112 1.0e-14 83.2 83 62.7
Nn1g03263 Nelumbo nucifera HOM05D003543 ORTHO05D004112 1.3e-14 82.8 52 76.9
Solyc04g014810.3 Solanum lycopersicum HOM05D003543 ORTHO05D004112 1.3e-14 82.8 55 74.5
SGA_v2.0_scaffold4G01862 Striga asiatica HOM05D003543 ORTHO05D004112 2.2e-14 82.0 54 75.9
SGA_v2.0_scaffold7G03732 Striga asiatica HOM05D003543 ORTHO05D004112 2.2e-14 82.0 53 77.4
Nn1g07428 Nelumbo nucifera HOM05D003543 ORTHO05D004112 2.9e-14 81.6 50 82.0
Nitab4.5_0000143g0100 Nicotiana tabacum HOM05D003543 ORTHO05D004112 2.9e-14 81.6 53 77.4
MD05G1359600 Malus domestica HOM05D003543 ORTHO05D004112 3.8e-14 81.3 53 75.5
Carub.0007s2501 Capsella rubella HOM05D003543 ORTHO05D004112 5.0e-14 80.9 51 76.5
CDE02G1583 Ceratophyllum demersum HOM05D003543 ORTHO05D004112 5.0e-14 80.9 57 73.7
Migut.H01613 Erythranthe guttata HOM05D003543 ORTHO05D004112 1.5e-13 79.3 59 69.5
Oeu002770.1 Olea europaea HOM05D003543 ORTHO05D004112 1.9e-13 79.0 54 75.9
PGSC0003DMG400013286 Solanum tuberosum HOM05D003543 ORTHO05D004112 1.9e-13 79.0 53 75.5
Oeu030109.1 Olea europaea HOM05D003543 ORTHO05D004112 2.5e-13 78.6 53 75.5
CAN.G696.20 Capsicum annuum HOM05D003543 ORTHO05D004112 3.2e-13 78.2 52 75.0
Glyma.14G202000 Glycine max HOM05D001760 ORTHO05D001691 7.2e-13 77.0 74 56.8
TAR626G1558 Trochodendron aralioides HOM05D003543 ORTHO05D004112 7.2e-13 77.0 53 71.7
THA.LOC104815484 Tarenaya hassleriana HOM05D003543 ORTHO05D004112 9.4e-13 76.6 45 84.4
HPP92_006094 Vanilla planifolia HOM05D003543 ORTHO05D004112 9.4e-13 76.6 56 71.4
CANSAT56G0448 Cannabis sativa HOM05D003543 ORTHO05D004112 1.2e-12 76.3 50 76.0
ATR0165G061 Amborella trichopoda HOM05D001760 ORTHO05D001691 1.6e-12 75.9 80 53.8
MELO3C034797.2 Cucumis melo HOM05D003543 ORTHO05D004112 1.6e-12 75.9 60 71.7
Gohir.A11G218700 Gossypium hirsutum HOM05D001760 ORTHO05D001691 2.1e-12 75.5 80 53.8
Gohir.D11G205000 Gossypium hirsutum HOM05D001760 ORTHO05D001691 2.1e-12 75.5 80 53.8
Gorai.007G219900 Gossypium raimondii HOM05D001760 ORTHO05D001691 2.1e-12 75.5 80 53.8
Lalb_Chr20g0119331 Lupinus albus HOM05D003543 ORTHO05D004112 2.1e-12 75.5 50 72.0
BcaNung00189 Brassica carinata HOM05D003543 ORTHO05D004112 2.7e-12 75.1 48 77.1
Thhalv10025098m.g Eutrema salsugineum HOM05D003543 ORTHO05D004112 2.7e-12 75.1 46 80.4
Lalb_Chr18g0057071 Lupinus albus HOM05D003543 ORTHO05D004112 2.7e-12 75.1 49 75.5
Sp7g15040 Schrenkiella parvula HOM05D003543 ORTHO05D004112 2.7e-12 75.1 46 80.4
AL7G38470 Arabidopsis lyrata HOM05D003543 ORTHO05D004112 3.6e-12 74.7 48 75.0
AT4G16490 Arabidopsis thaliana HOM05D003543 ORTHO05D004112 3.6e-12 74.7 48 75.0
MSTRG.1787 Avicennia marina HOM05D001760 ORTHO05D001691 3.6e-12 74.7 79 51.9
MELO3C024097.2 Cucumis melo HOM05D000318 ORTHO05D004112 3.6e-12 74.7 62 74.2
Migut.M01414 Erythranthe guttata HOM05D003543 ORTHO05D004112 3.6e-12 74.7 50 74.0
Gorai.003G028100 Gossypium raimondii HOM05D001760 ORTHO05D001691 3.6e-12 74.7 76 53.9
Aa31LG9G12240 Aethionema arabicum HOM05D003543 ORTHO05D004112 6.1e-12 73.9 45 82.2
CARHR222890 Cardamine hirsuta HOM05D003543 ORTHO05D004112 6.1e-12 73.9 48 72.9
CiPaw.09G104000 Carya illinoinensis HOM05D003543 ORTHO05D004112 6.1e-12 73.9 51 72.5
Os08g0110500 Oryza sativa ssp. japonica HOM05D001760 ORTHO05D001691 6.1e-12 73.9 80 51.2
Prupe.6G225500 Prunus persica HOM05D001760 ORTHO05D001691 6.1e-12 73.9 76 56.6
SalBow8G1766 Salvia bowleyana HOM05D003543 ORTHO05D004112 6.1e-12 73.9 45 80.0
SHI32533 Sapria himalayana HOM05D000002 ORTHO05D000001 6.1e-12 73.9 76 52.6
Sopen04g006940 Solanum pennellii HOM05D003543 ORTHO05D004112 6.1e-12 73.9 53 69.8
BcaC09g50355 Brassica carinata HOM05D003543 ORTHO05D004112 8.0e-12 73.6 46 78.3
A01p21010 Brassica napus HOM05D003543 ORTHO05D004112 8.0e-12 73.6 46 78.3
C01p26290 Brassica napus HOM05D003543 ORTHO05D004112 8.0e-12 73.6 46 78.3
BolC1t02576H Brassica oleracea HOM05D003543 ORTHO05D004112 8.0e-12 73.6 46 78.3
BraA01t02016Z Brassica rapa HOM05D003543 ORTHO05D004112 8.0e-12 73.6 46 78.3
CAN.G442.7 Capsicum annuum HOM05D001760 ORTHO05D001691 8.0e-12 73.6 80 52.5
CAN.G7501.1 Capsicum annuum HOM05D001760 ORTHO05D001691 8.0e-12 73.6 80 52.5
Glyma.07G266400 Glycine max HOM05D003543 ORTHO05D004112 1.4e-11 72.8 50 72.0
Os07g0587500 Oryza sativa ssp. japonica HOM05D000215 ORTHO05D005007 1.4e-11 72.8 74 56.8
MSTRG.7156 Avicennia marina HOM05D003543 ORTHO05D004112 1.8e-11 72.4 45 77.8
BcaC07g41004 Brassica carinata HOM05D001760 ORTHO05D001691 1.8e-11 72.4 80 51.2
Dinv26889 Davidia involucrata HOM05D001760 ORTHO05D001691 1.8e-11 72.4 76 53.9
TAR629G3525 Trochodendron aralioides HOM05D003543 ORTHO05D004112 1.8e-11 72.4 52 80.8
Aa31LG2G12560 Aethionema arabicum HOM05D003543 ORTHO05D004112 2.3e-11 72.0 48 72.9
EL10Ac2g02554 Beta vulgaris HOM05D001760 ORTHO05D001691 2.3e-11 72.0 80 51.2
Glyma.17G007900 Glycine max HOM05D003543 ORTHO05D004112 2.3e-11 72.0 47 78.7
Zm00001eb174100 Zea mays HOM05D001760 ORTHO05D001691 3.0e-11 71.6 80 50.0
Zm00001eb260470 Zea mays HOM05D001760 ORTHO05D001691 3.0e-11 71.6 80 50.0
Lsat_1_v5_gn_7_13800 Lactuca sativa HOM05D003543 ORTHO05D004112 4.0e-11 71.2 84 58.3
Migut.A00589 Erythranthe guttata HOM05D001760 ORTHO05D001691 5.2e-11 70.9 80 52.5
MBI16_g42305_MAGBIO Magnolia biondii HOM05D003543 ORTHO05D004112 5.2e-11 70.9 70 58.6
Sc05g0009680 Simmondsia chinensis HOM05D003543 ORTHO05D004112 5.2e-11 70.9 45 77.8
AUR62003956 Chenopodium quinoa HOM05D001760 ORTHO05D001691 6.7e-11 70.5 80 51.2
AUR62038269 Chenopodium quinoa HOM05D001760 ORTHO05D001691 8.8e-11 70.1 80 50.0
Hma1.2p1_0819F.1_g223730 Hydrangea macrophylla HOM05D004466 ORTHO05D005007 8.8e-11 70.1 78 51.3
Nn4g23510 Nelumbo nucifera HOM05D001760 ORTHO05D005007 8.8e-11 70.1 75 53.3
Gohir.D03G026450 Gossypium hirsutum HOM05D001760 ORTHO05D001691 1.5e-10 69.3 76 50.0
Lj5g0004498 Lotus japonicus HOM05D004466 ORTHO05D005007 1.5e-10 69.3 78 47.4
PGR083G1484 Punica granatum HOM05D004466 ORTHO05D005007 1.5e-10 69.3 74 51.4
GSVIVG01006098001 Vitis vinifera HOM05D003543 ORTHO05D004112 1.5e-10 69.3 80 52.5
Zm00001eb326060 Zea mays HOM05D000215 ORTHO05D005007 2.6e-10 68.6 74 54.1
A07p16550 Brassica napus HOM05D001760 ORTHO05D001691 3.3e-10 68.2 80 47.5
BraA07t29379Z Brassica rapa HOM05D001760 ORTHO05D001691 3.3e-10 68.2 80 47.5
Lsat_1_v5_gn_4_63420 Lactuca sativa HOM05D003543 ORTHO05D004112 3.3e-10 68.2 62 64.5
VMungo0331G0898 Vigna mungo HOM05D003543 ORTHO05D017182 3.3e-10 68.2 53 67.9
Gorai.003G026700 Gossypium raimondii HOM05D001760 ORTHO05D020003 7.5e-10 67.0 76 48.7
CsaV3_6G043740 Cucumis sativus L. HOM05D001760 ORTHO05D001691 9.7e-10 66.6 76 55.3
arahy.Tifrunner.gnm1.ann1.09PW0C Arachis hypogaea HOM05D003543 ORTHO05D004112 1.3e-09 66.2 49 65.3
arahy.Tifrunner.gnm1.ann1.ZLF8NQ Arachis hypogaea HOM05D003543 ORTHO05D004112 1.3e-09 66.2 49 65.3
C07p24240 Brassica napus HOM05D001760 ORTHO05D001691 1.3e-09 66.2 80 47.5
BolC7t42953H Brassica oleracea HOM05D001760 ORTHO05D001691 1.3e-09 66.2 80 47.5
ClCG01G017200 Citrullus lanatus HOM05D001760 ORTHO05D001691 1.3e-09 66.2 76 53.9
MELO3C007598.2 Cucumis melo HOM05D001760 ORTHO05D001691 1.3e-09 66.2 76 53.9
PSO541G0019 Papaver somniferum HOM05D003543 ORTHO05D004112 1.3e-09 66.2 50 66.0
Sabra02G0030400 Salix brachista HOM05D001760 ORTHO05D001691 1.3e-09 66.2 76 47.4
Zm00001eb325810 Zea mays HOM05D030178 ORTHO05D004112 1.7e-09 65.9 50 64.0
Hund29371 Selenicereus undatus HOM05D001760 ORTHO05D001691 2.2e-09 65.5 80 46.2
Hund29374 Selenicereus undatus HOM05D001760 ORTHO05D001691 2.2e-09 65.5 80 46.2
BcaB06g27882 Brassica carinata HOM05D001760 ORTHO05D020003 6.3e-09 63.9 71 50.7
Gohir.D03G025100 Gossypium hirsutum HOM05D001760 ORTHO05D020003 6.3e-09 63.9 72 48.6
Sed0018612 Sechium edule HOM05D001760 ORTHO05D001691 6.3e-09 63.9 76 52.6
Glyma.06G045900 Glycine max HOM05D004466 ORTHO05D005007 8.2e-09 63.5 78 46.2
Glyma.10G037500 Glycine max HOM05D001760 ORTHO05D001691 8.2e-09 63.5 76 48.7
unitig_32.g11369 Utricularia gibba HOM05D003543 ORTHO05D004112 1.8e-08 62.4 57 64.9
HPP92_009541 Vanilla planifolia HOM05D001760 ORTHO05D005007 1.8e-08 62.4 78 46.2
PSO781G0286 Papaver somniferum HOM05D003543 ORTHO05D004112 2.4e-08 62.0 46 65.2
AUR62037475 Chenopodium quinoa HOM05D004466 ORTHO05D005007 3.1e-08 61.6 67 52.2
AUR62038778 Chenopodium quinoa HOM05D004466 ORTHO05D005007 3.1e-08 61.6 67 52.2
Nitab4.5_0003626g0080 Nicotiana tabacum HOM05D003543 ORTHO05D004112 4.1e-08 61.2 54 61.1
SEGI_30157 Sequoiadendron giganteum HOM05D001760 ORTHO05D001691 4.1e-08 61.2 76 47.4
VMungo0331G2023 Vigna mungo HOM05D010769 ORTHO05D004112 4.1e-08 61.2 43 72.1
Zm00001eb085470 Zea mays HOM05D002753 ORTHO05D015449 4.1e-08 61.2 74 50.0
AUR62038395 Chenopodium quinoa HOM05D000154 ORTHO05D000092 5.3e-08 60.8 80 47.5
Gohir.D06G161100 Gossypium hirsutum HOM05D003543 ORTHO05D004112 1.2e-07 59.7 34 85.3
Gorai.010G188000 Gossypium raimondii HOM05D003543 ORTHO05D004112 1.2e-07 59.7 34 85.3
TWI38G1278 Tripterygium wilfordii HOM05D003543 ORTHO05D004112 1.2e-07 59.7 36 86.1
Sabra02G0093300 Salix brachista HOM05D004466 ORTHO05D005007 1.6e-07 59.3 61 50.8
Eucgr.D01428 Eucalyptus grandis HOM05D003543 ORTHO05D004112 2.0e-07 58.9 36 80.6
Lj4A758T66 Lonicera japonica HOM05D004466 ORTHO05D005007 2.7e-07 58.5 61 49.2
Pp3c17_14150 Physcomitrium patens HOM05D000577 ORTHO05D003389 2.7e-07 58.5 73 46.6
MSTRG.14606 Avicennia marina HOM05D003543 ORTHO05D004112 3.5e-07 58.2 43 67.4
EL10Ac6g15671 Beta vulgaris HOM05D001865 ORTHO05D001691 3.5e-07 58.2 80 45.0
DCAR_015275 Daucus carota HOM05D001760 ORTHO05D001691 3.5e-07 58.2 52 63.5
Solyc11g012440.1 Solanum lycopersicum HOM05D003543 ORTHO05D004112 4.5e-07 57.8 54 59.3
C07p47940 Brassica napus HOM05D003543 ORTHO05D004112 5.9e-07 57.4 36 75.0
BolC7t45317H Brassica oleracea HOM05D003543 ORTHO05D004112 5.9e-07 57.4 36 75.0
ATR0712G168 Amborella trichopoda HOM05D003543 ORTHO05D004112 1.3e-06 56.2 51 54.9
Duzib187G1688 Durio zibethinus HOM05D001760 ORTHO05D001691 1.3e-06 56.2 54 61.1
Gohir.A06G154400 Gossypium hirsutum HOM05D003543 ORTHO05D004112 1.3e-06 56.2 32 84.4
Lsat_1_v5_gn_4_162241 Lactuca sativa HOM05D001760 ORTHO05D001691 1.3e-06 56.2 54 61.1
Lj7C86G4 Lonicera japonica HOM05D001760 ORTHO05D001691 1.3e-06 56.2 54 61.1
Manes.08G070984 Manihot esculenta HOM05D003543 ORTHO05D004112 1.3e-06 56.2 31 90.3
TAR631G0001 Trochodendron aralioides HOM05D003543 ORTHO05D004112 1.3e-06 56.2 32 87.5
Cpa.g.sc6.66 Carica papaya HOM05D001760 ORTHO05D001691 1.7e-06 55.8 62 51.6
Duzib192G0760 Durio zibethinus HOM05D003543 ORTHO05D004112 1.7e-06 55.8 31 87.1
Duzib235G1522 Durio zibethinus HOM05D003543 ORTHO05D004112 1.7e-06 55.8 32 84.4
Cc07_g06640 Coffea canephora HOM05D001760 ORTHO05D001691 2.2e-06 55.5 54 61.1
CANSAT01G1330 Cannabis sativa HOM05D001760 ORTHO05D001691 2.9e-06 55.1 54 59.3
DCAR_030861 Daucus carota HOM05D003543 ORTHO05D004112 2.9e-06 55.1 50 52.0
Duzib264G0410 Durio zibethinus HOM05D001760 ORTHO05D001691 2.9e-06 55.1 54 59.3
Hma1.2p1_0657F.1_g197030 Hydrangea macrophylla HOM05D003543 ORTHO05D004112 2.9e-06 55.1 32 84.4
Peaxi162Scf00352g00096 Petunia axillaris HOM05D003543 ORTHO05D004112 2.9e-06 55.1 33 84.8
CSS0010074 Camellia sinensis var. sinensis HOM05D003543 ORTHO05D004112 3.8e-06 54.7 32 84.4
CSS0034148 Camellia sinensis var. sinensis HOM05D003543 ORTHO05D004112 3.8e-06 54.7 32 84.4
COL.COLO4_31904 Corchorus olitorius HOM05D003543 ORTHO05D004112 3.8e-06 54.7 31 83.9
Lj6g0020811 Lotus japonicus HOM05D003543 ORTHO05D004112 3.8e-06 54.7 31 87.1
Potri.007G051000 Populus trichocarpa HOM05D001760 ORTHO05D001691 3.8e-06 54.7 54 59.3
Thecc.06G235100 Theobroma cacao HOM05D003543 ORTHO05D004112 3.8e-06 54.7 31 83.9
Atru.chr3.218 Acer truncatum HOM05D001760 ORTHO05D001691 5.0e-06 54.3 63 49.2
Atru.chr3.229 Acer truncatum HOM05D001760 ORTHO05D001691 5.0e-06 54.3 63 49.2
Actinidia02307 Actinidia chinensis HOM05D003543 ORTHO05D004112 5.0e-06 54.3 31 87.1
Ah.03g146250 Amaranthus hybridus HOM05D001760 ORTHO05D001691 5.0e-06 54.3 78 42.3
CDE01G0383 Ceratophyllum demersum HOM05D001760 ORTHO05D001691 5.0e-06 54.3 53 52.8
Dinv05019 Davidia involucrata HOM05D003543 ORTHO05D004112 5.0e-06 54.3 31 87.1
Sopen11g007180 Solanum pennellii HOM05D003543 ORTHO05D004112 5.0e-06 54.3 33 84.8
VMungo0647G1663 Vigna mungo HOM05D001760 ORTHO05D001691 5.0e-06 54.3 62 53.2
CAN.G1263.22 Capsicum annuum HOM05D003543 ORTHO05D004112 6.5e-06 53.9 34 79.4
COL.COLO4_11514 Corchorus olitorius HOM05D001760 ORTHO05D001691 6.5e-06 53.9 54 59.3
Medtr2g026130 Medicago truncatula HOM05D003543 ORTHO05D004112 6.5e-06 53.9 32 84.4
PGSC0003DMG400010616 Solanum tuberosum HOM05D004466 ORTHO05D005007 6.5e-06 53.9 51 52.9
TPR.G10581 Trifolium pratense HOM05D003543 ORTHO05D004112 6.5e-06 53.9 32 84.4
CsaV3_6G048440 Cucumis sativus L. HOM05D003543 ORTHO05D004112 8.5e-06 53.5 32 81.2
FAN28G2089 Fragaria x ananassa HOM05D001760 ORTHO05D001691 8.5e-06 53.5 54 57.4
Lj4C158T3 Lonicera japonica HOM05D001760 ORTHO05D001691 8.5e-06 53.5 54 57.4
Prupe.6G225600 Prunus persica HOM05D001760 ORTHO05D001691 8.5e-06 53.5 54 57.4
Rhsim08G0096400 Rhododendron simsii HOM05D001760 ORTHO05D001691 8.5e-06 53.5 52 59.6
Rhsim08G0096500 Rhododendron simsii HOM05D001760 ORTHO05D001691 8.5e-06 53.5 54 59.3


User provided reference genes

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