Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g28859 Nelumbo nucifera HOM05D007964 ORTHO05D010090 1.3e-69 266.2 129 100.0
Hma1.2p1_0678F.1_g202130 Hydrangea macrophylla HOM05D007964 ORTHO05D010090 1.7e-27 126.3 128 53.9
CSS0006430 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 4.9e-27 124.8 128 55.5
CSS0037867 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 6.3e-27 124.4 128 55.5
Cfa018267 Carpinus fangiana HOM05D007964 ORTHO05D010090 6.3e-27 124.4 136 54.4
Haze_17821 Corylus avellana HOM05D007964 ORTHO05D010090 1.4e-26 123.2 136 53.7
Oeu046067.1 Olea europaea HOM05D007964 ORTHO05D010090 3.1e-26 122.1 125 52.8
Manes.02G184300 Manihot esculenta HOM05D007964 ORTHO05D010090 9.2e-26 120.6 125 52.8
Potri.005G198200 Populus trichocarpa HOM05D007964 ORTHO05D010090 1.2e-25 120.2 134 53.7
Aqoxy6G00437 Aquilegia oxysepala HOM05D007964 ORTHO05D010090 1.0e-24 117.1 128 46.9
CiPaw.15G011700 Carya illinoinensis HOM05D007964 ORTHO05D010090 1.3e-24 116.7 119 55.5
CsaV3_6G004920 Cucumis sativus L. HOM05D007964 ORTHO05D010090 2.3e-24 115.9 139 49.6
MELO3C019968.2 Cucumis melo HOM05D007964 ORTHO05D010090 2.9e-24 115.5 139 48.9
Sabra05G0151100 Salix brachista HOM05D007964 ORTHO05D010090 6.6e-24 114.4 117 53.8
Rhsim06G0092800 Rhododendron simsii HOM05D007964 ORTHO05D010090 1.5e-23 113.2 129 50.4
ClCG08G007250 Citrullus lanatus HOM05D007964 ORTHO05D010090 2.5e-23 112.5 131 48.1
SalBow6G4546 Salvia bowleyana HOM05D007964 ORTHO05D010090 2.5e-23 112.5 109 56.0
Atru.chr13.1988 Acer truncatum HOM05D007964 ORTHO05D010090 4.3e-23 111.7 140 50.7
Gorai.010G134000 Gossypium raimondii HOM05D007964 ORTHO05D010090 5.6e-23 111.3 129 50.4
EL10Ac1g01623 Beta vulgaris HOM05D007964 ORTHO05D010090 9.5e-23 110.5 132 49.2
QL02p037092 Quercus lobata HOM05D007964 ORTHO05D010090 9.5e-23 110.5 123 54.5
Peaxi162Scf00360g00092 Petunia axillaris HOM05D007964 ORTHO05D010090 1.2e-22 110.2 122 52.5
Migut.N02947 Erythranthe guttata HOM05D007964 ORTHO05D010090 1.6e-22 109.8 111 50.5
Psat0s1172g0240 Pisum sativum HOM05D007964 ORTHO05D010090 1.6e-22 109.8 118 45.8
Gohir.A06G112000 Gossypium hirsutum HOM05D007964 ORTHO05D010090 2.1e-22 109.4 129 50.4
Sed0009872 Sechium edule HOM05D007964 ORTHO05D010090 2.1e-22 109.4 144 45.8
QL02p036563 Quercus lobata HOM05D007964 ORTHO05D010090 2.8e-22 109.0 123 53.7
Gohir.D06G116200 Gossypium hirsutum HOM05D007964 ORTHO05D010090 3.6e-22 108.6 129 49.6
PGSC0003DMG400025075 Solanum tuberosum HOM05D007964 ORTHO05D010090 3.6e-22 108.6 121 52.1
Migut.O00757 Erythranthe guttata HOM05D007964 ORTHO05D010090 6.1e-22 107.8 111 49.5
SGA_v2.0_scaffold54G19690 Striga asiatica HOM05D007964 ORTHO05D010090 8.0e-22 107.5 113 51.3
Phvul.004G087600 Phaseolus vulgaris HOM05D007964 ORTHO05D010090 1.0e-21 107.1 130 46.9
Ciclev10003908m.g Citrus clementina HOM05D007964 ORTHO05D010090 1.8e-21 106.3 128 47.7
Sed0027049 Sechium edule HOM05D007964 ORTHO05D010090 1.8e-21 106.3 122 48.4
Ca_04662_v3 Cicer arietinum L. HOM05D007964 ORTHO05D010090 2.3e-21 105.9 110 47.3
Glyma.02G078400 Glycine max HOM05D007964 ORTHO05D010090 4.0e-21 105.1 130 46.9
Medtr6g039830 Medicago truncatula HOM05D007964 ORTHO05D010090 6.8e-21 104.4 123 48.0
Glyma.16G161400 Glycine max HOM05D007964 ORTHO05D010090 1.2e-20 103.6 110 48.2
Ah.05g167820 Amaranthus hybridus HOM05D007964 ORTHO05D010090 1.5e-20 103.2 131 47.3
Thecc.08G162400 Theobroma cacao HOM05D007964 ORTHO05D010090 5.7e-20 101.3 127 49.6
Aa31LG4G8900 Aethionema arabicum HOM05D007964 ORTHO05D010090 3.7e-19 98.6 131 46.6
FAN20G1166 Fragaria x ananassa HOM05D007964 ORTHO05D010090 3.7e-19 98.6 128 49.2
CANSAT25G1394 Cannabis sativa HOM05D007964 ORTHO05D010090 8.3e-19 97.4 125 41.6
FvH4_2g12880 Fragaria vesca HOM05D007964 ORTHO05D010090 8.3e-19 97.4 127 48.8
FAN24G2710 Fragaria x ananassa HOM05D007964 ORTHO05D010090 8.3e-19 97.4 127 48.8
RcHm_v2.0_Chr6g0273981 Rosa chinensis HOM05D007964 ORTHO05D010090 1.4e-18 96.7 127 45.7
FAN27G1192 Fragaria x ananassa HOM05D007964 ORTHO05D010090 1.8e-18 96.3 128 49.2
Lsat_1_v5_gn_6_100061 Lactuca sativa HOM05D007964 ORTHO05D010090 3.2e-18 95.5 119 45.4
Sopen04g028110 Solanum pennellii HOM05D007964 ORTHO05D010090 7.0e-18 94.4 85 56.5
Potri.002G062950 Populus trichocarpa HOM05D007964 ORTHO05D010090 9.2e-18 94.0 121 44.6
Prupe.8G043200 Prunus persica HOM05D007964 ORTHO05D010090 2.0e-17 92.8 130 46.2
COL.COLO4_29112 Corchorus olitorius HOM05D007964 ORTHO05D010090 2.7e-17 92.4 127 45.7
PGR042G2516 Punica granatum HOM05D007964 ORTHO05D010090 2.7e-17 92.4 112 44.6
AUR62034908 Chenopodium quinoa HOM05D007964 ORTHO05D010090 3.5e-17 92.0 132 43.9
DCAR_001195 Daucus carota HOM05D007964 ORTHO05D010090 3.5e-17 92.0 88 54.5
CAN.G1183.20 Capsicum annuum HOM05D007964 ORTHO05D010090 5.9e-17 91.3 84 53.6
AUR62026621 Chenopodium quinoa HOM05D007964 ORTHO05D010090 5.9e-17 91.3 132 43.2
THA.LOC104810508 Tarenaya hassleriana HOM05D007964 ORTHO05D010090 5.9e-17 91.3 110 47.3
Lalb_Chr19g0130001 Lupinus albus HOM05D007964 ORTHO05D010090 3.0e-16 89.0 108 44.4
Nitab4.5_0003178g0050 Nicotiana tabacum HOM05D007964 ORTHO05D010090 3.0e-16 89.0 87 52.9
Nitab4.5_0003443g0080 Nicotiana tabacum HOM05D007964 ORTHO05D010090 2.5e-15 85.9 88 51.1
AT1G71740 Arabidopsis thaliana HOM05D007964 ORTHO05D010090 1.2e-14 83.6 101 46.5
CARHR291050 Cardamine hirsuta HOM05D007964 ORTHO05D010090 1.2e-14 83.6 99 46.5
Carub.0002s1850 Capsella rubella HOM05D007964 ORTHO05D010090 2.8e-14 82.4 86 47.7
AL2G31310 Arabidopsis lyrata HOM05D007964 ORTHO05D010090 3.6e-14 82.0 127 40.9
BcaC08g46600 Brassica carinata HOM05D007964 ORTHO05D010090 6.2e-14 81.3 127 41.7
C06p45790 Brassica napus HOM05D007964 ORTHO05D010090 6.2e-14 81.3 127 41.7
BolC6t39631H Brassica oleracea HOM05D007964 ORTHO05D010090 8.0e-14 80.9 127 41.7
A07p37890 Brassica napus HOM05D007964 ORTHO05D010090 1.1e-13 80.5 86 47.7
BraA07t31354Z Brassica rapa HOM05D007964 ORTHO05D010090 1.1e-13 80.5 86 47.7
Sp5g26770 Schrenkiella parvula HOM05D007964 ORTHO05D010090 1.1e-13 80.5 133 40.6
Thhalv10019796m.g Eutrema salsugineum HOM05D007964 ORTHO05D010090 1.4e-13 80.1 115 42.6
Os02g0210900 Oryza sativa ssp. japonica HOM05D007964 ORTHO05D010090 3.1e-13 79.0 112 46.4
HPP92_000633 Vanilla planifolia HOM05D007964 ORTHO05D010090 3.1e-13 79.0 128 36.7
CSS0037942 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 3.4e-12 75.5 43 81.4
ATR1120G014 Amborella trichopoda HOM05D007964 ORTHO05D010090 1.3e-11 73.6 102 39.2
Zm00001eb205370 Zea mays HOM05D007964 ORTHO05D010090 2.3e-08 62.8 55 54.5
MBI10_g08546_MAGBIO Magnolia biondii HOM05D008294 ORTHO05D010468 2.8e-06 55.8 114 38.6
Medtr8g035940 Medicago truncatula HOM05D002803 ORTHO05D003089 2.8e-06 55.8 82 35.4
SEGI_25700 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 3.6e-06 55.5 50 44.0
MSTRG.2266 Avicennia marina HOM05D002803 ORTHO05D003089 4.7e-06 55.1 39 64.1
Potri.010G130600 Populus trichocarpa HOM05D002803 ORTHO05D003089 6.2e-06 54.7 36 63.9
PGR102G2995 Punica granatum HOM05D002803 ORTHO05D003089 6.2e-06 54.7 31 74.2
SMO367G0928 Selaginella moellendorffii HOM05D002803 ORTHO05D003089 6.2e-06 54.7 66 43.9
Cpa.g.sc604.2 Carica papaya HOM05D008294 ORTHO05D010468 8.1e-06 54.3 67 37.3
Gorai.008G058300 Gossypium raimondii HOM05D008294 ORTHO05D010468 8.1e-06 54.3 59 42.4


User provided reference genes

Program Settings