Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g28850 Nelumbo nucifera HOM05D001334 ORTHO05D001119 6.9e-40 166.8 80 100.0
Nn4g22380 Nelumbo nucifera HOM05D001334 ORTHO05D001119 4.5e-23 110.9 57 93.0
Nn3g16523 Nelumbo nucifera HOM05D001334 ORTHO05D001119 8.5e-14 80.1 69 62.3
Dinv25671 Davidia involucrata HOM05D001334 ORTHO05D001119 1.1e-13 79.7 56 67.9
TAR374G1191 Trochodendron aralioides HOM05D001334 ORTHO05D001119 1.2e-12 76.3 56 62.5
Actinidia05907 Actinidia chinensis HOM05D001334 ORTHO05D001119 2.1e-12 75.5 56 62.5
TAR622G1247 Trochodendron aralioides HOM05D001334 ORTHO05D001119 2.1e-12 75.5 56 62.5
MBI08_g17168_MAGBIO Magnolia biondii HOM05D001334 ORTHO05D001119 4.7e-12 74.3 55 67.3
Dinv33356 Davidia involucrata HOM05D001334 ORTHO05D001119 6.1e-12 73.9 56 62.5
CSS0034870 Camellia sinensis var. sinensis HOM05D001334 ORTHO05D001119 1.4e-11 72.8 56 60.7
Rhsim10G0008400 Rhododendron simsii HOM05D001334 ORTHO05D001119 1.4e-11 72.8 56 60.7
CSS0008134 Camellia sinensis var. sinensis HOM05D001334 ORTHO05D001119 1.8e-11 72.4 56 60.7
CSS0030615 Camellia sinensis var. sinensis HOM05D001334 ORTHO05D001119 1.8e-11 72.4 56 60.7
Cfa009343 Carpinus fangiana HOM05D001334 ORTHO05D001119 2.3e-11 72.0 68 51.5
Haze_12380 Corylus avellana HOM05D001334 ORTHO05D001119 3.0e-11 71.6 63 54.0
Actinidia36183 Actinidia chinensis HOM05D001334 ORTHO05D001119 5.2e-11 70.9 63 54.0
TAR629G2365 Trochodendron aralioides HOM05D001334 ORTHO05D001119 6.7e-11 70.5 57 64.9
CiPaw.05G113300 Carya illinoinensis HOM05D001334 ORTHO05D001119 2.6e-10 68.6 66 53.0
Ciclev10014104m.g Citrus clementina HOM05D001334 ORTHO05D001119 2.6e-10 68.6 57 57.9
vmacro05941 Vaccinium macrocarpon HOM05D001334 ORTHO05D001119 2.6e-10 68.6 55 58.2
Lju41A51T44 Lonicera japonica HOM05D001334 ORTHO05D001119 5.7e-10 67.4 59 49.2
Aqoxy5G03448 Aquilegia oxysepala HOM05D001334 ORTHO05D001119 7.5e-10 67.0 55 63.6
Thecc.04G031000 Theobroma cacao HOM05D001334 ORTHO05D001119 9.7e-10 66.6 58 56.9
TWI12G0671 Tripterygium wilfordii HOM05D001334 ORTHO05D001119 9.7e-10 66.6 74 44.6
Lj7A609T56 Lonicera japonica HOM05D001334 ORTHO05D001119 1.3e-09 66.2 56 53.6
Gohir.A10G159800 Gossypium hirsutum HOM05D001334 ORTHO05D001119 2.2e-09 65.5 59 59.3
COL.COLO4_08741 Corchorus olitorius HOM05D001334 ORTHO05D001119 2.8e-09 65.1 57 56.1
Duzib264G0954 Durio zibethinus HOM05D001334 ORTHO05D001119 2.8e-09 65.1 56 57.1
SGA_v2.0_scaffold154G37163 Striga asiatica HOM05D001334 ORTHO05D001119 2.8e-09 65.1 54 57.4
Aqoxy3G01484 Aquilegia oxysepala HOM05D001334 ORTHO05D001119 6.3e-09 63.9 66 50.0
Gohir.D10G084900 Gossypium hirsutum HOM05D001334 ORTHO05D001119 6.3e-09 63.9 59 59.3
Gorai.011G092300 Gossypium raimondii HOM05D001334 ORTHO05D001119 6.3e-09 63.9 59 59.3
Sabra16G0214400 Salix brachista HOM05D001334 ORTHO05D001119 6.3e-09 63.9 56 57.1
Thhalv10020012m.g Eutrema salsugineum HOM05D001334 ORTHO05D001119 1.4e-08 62.8 53 54.7
Atru.chr6.2524 Acer truncatum HOM05D001334 ORTHO05D001119 1.8e-08 62.4 67 46.3
MSTRG.15562 Avicennia marina HOM05D001334 ORTHO05D001119 1.8e-08 62.4 55 60.0
HPP92_024640 Vanilla planifolia HOM05D001334 ORTHO05D001119 1.8e-08 62.4 52 53.8
Aa31LG5G10940 Aethionema arabicum HOM05D001334 ORTHO05D001119 2.4e-08 62.0 58 50.0
arahy.Tifrunner.gnm1.ann1.MJ7V8R Arachis hypogaea HOM05D001334 ORTHO05D001119 4.1e-08 61.2 61 49.2
ClCG05G013340 Citrullus lanatus HOM05D001334 ORTHO05D001119 7.0e-08 60.5 55 54.5
Gohir.D07G233900 Gossypium hirsutum HOM05D001334 ORTHO05D001119 7.0e-08 60.5 56 53.6
Gorai.001G269300 Gossypium raimondii HOM05D001334 ORTHO05D001119 7.0e-08 60.5 56 53.6
PSO017G4760 Papaver somniferum HOM05D001334 ORTHO05D001119 7.0e-08 60.5 53 58.5
arahy.Tifrunner.gnm1.ann1.PNPF4F Arachis hypogaea HOM05D001334 ORTHO05D001119 9.1e-08 60.1 61 47.5
CAN.G1965.15 Capsicum annuum HOM05D001334 ORTHO05D001119 9.1e-08 60.1 54 55.6
FAN05G2545 Fragaria x ananassa HOM05D001334 ORTHO05D001119 9.1e-08 60.1 54 50.0
Gohir.A07G226700 Gossypium hirsutum HOM05D001334 ORTHO05D001119 9.1e-08 60.1 56 53.6
ATR0686G145 Amborella trichopoda HOM05D001334 ORTHO05D001119 1.2e-07 59.7 57 52.6
AT3G01810 Arabidopsis thaliana HOM05D001334 ORTHO05D001119 1.2e-07 59.7 53 52.8
FAN02G1478 Fragaria x ananassa HOM05D001334 ORTHO05D001119 1.2e-07 59.7 59 45.8
Lj3C1065T7 Lonicera japonica HOM05D001334 ORTHO05D001119 1.2e-07 59.7 53 58.5
QL03p054493 Quercus lobata HOM05D001334 ORTHO05D001119 1.2e-07 59.7 50 60.0
vmacro18332 Vaccinium macrocarpon HOM05D001334 ORTHO05D001119 1.2e-07 59.7 56 55.4
Migut.J01794 Erythranthe guttata HOM05D001334 ORTHO05D001119 1.6e-07 59.3 69 44.9
FvH4_6g53120 Fragaria vesca HOM05D001334 ORTHO05D001119 1.6e-07 59.3 52 50.0
FAN09G3180 Fragaria x ananassa HOM05D001334 ORTHO05D001119 1.6e-07 59.3 52 50.0
FAN14G2545 Fragaria x ananassa HOM05D001334 ORTHO05D001119 1.6e-07 59.3 52 50.0
MD09G1014400 Malus domestica HOM05D001334 ORTHO05D001119 1.6e-07 59.3 65 43.1
vmacro01077 Vaccinium macrocarpon HOM05D001334 ORTHO05D001119 1.6e-07 59.3 50 60.0
Cc07_g00640 Coffea canephora HOM05D001334 ORTHO05D001119 2.0e-07 58.9 51 56.9
Manes.17G105300 Manihot esculenta HOM05D001334 ORTHO05D001119 2.7e-07 58.5 61 45.9
QL02p071916 Quercus lobata HOM05D001334 ORTHO05D001119 2.7e-07 58.5 57 50.9
RcHm_v2.0_Chr2g0174991 Rosa chinensis HOM05D001334 ORTHO05D001119 2.7e-07 58.5 54 48.1
RcHm_v2.0_Chr2g0175091 Rosa chinensis HOM05D001334 ORTHO05D001119 2.7e-07 58.5 54 48.1
GSVIVG01001814001 Vitis vinifera HOM05D001334 ORTHO05D001119 2.7e-07 58.5 56 51.8
A03p32330 Brassica napus HOM05D001334 ORTHO05D001119 3.5e-07 58.2 51 54.9
Carub.0003s0025 Capsella rubella HOM05D001334 ORTHO05D001119 3.5e-07 58.2 52 50.0
Dinv14812 Davidia involucrata HOM05D001334 ORTHO05D001119 3.5e-07 58.2 49 59.2
Duzib147G0251 Durio zibethinus HOM05D001334 ORTHO05D001119 3.5e-07 58.2 57 56.1
Peaxi162Scf00420g00434 Petunia axillaris HOM05D001334 ORTHO05D001119 3.5e-07 58.2 57 54.4
Rhsim08G0044200 Rhododendron simsii HOM05D001334 ORTHO05D001119 3.5e-07 58.2 56 55.4
CiPaw.03G053200 Carya illinoinensis HOM05D001334 ORTHO05D001119 4.5e-07 57.8 65 46.2
MBI01_g05763_MAGBIO Magnolia biondii HOM05D001334 ORTHO05D001119 4.5e-07 57.8 68 42.6
CANSAT64G2685 Cannabis sativa HOM05D001334 ORTHO05D001119 5.9e-07 57.4 54 48.1
Glyma.16G059500 Glycine max HOM05D001334 ORTHO05D001119 5.9e-07 57.4 62 45.2
MBI04_g13613_MAGBIO Magnolia biondii HOM05D001334 ORTHO05D001119 5.9e-07 57.4 75 40.0
Nn7g36190 Nelumbo nucifera HOM05D001334 ORTHO05D001119 5.9e-07 57.4 68 44.1
PSO063G6716 Papaver somniferum HOM05D001334 ORTHO05D001119 5.9e-07 57.4 56 55.4
Potri.001G333200 Populus trichocarpa HOM05D001334 ORTHO05D001119 5.9e-07 57.4 57 54.4
Sopen03g001070 Solanum pennellii HOM05D001334 ORTHO05D001119 5.9e-07 57.4 54 53.7
PGSC0003DMG400013428 Solanum tuberosum HOM05D001334 ORTHO05D001119 5.9e-07 57.4 54 53.7
CiPaw.06G100300 Carya illinoinensis HOM05D001334 ORTHO05D001119 7.7e-07 57.0 57 49.1
AUR62018233 Chenopodium quinoa HOM05D001334 ORTHO05D001119 7.7e-07 57.0 57 49.1
Solyc03g005060.4 Solanum lycopersicum HOM05D001334 ORTHO05D001119 7.7e-07 57.0 54 51.9
BraA03t12403Z Brassica rapa HOM05D001334 ORTHO05D001119 1.0e-06 56.6 51 52.9
MSTRG.13318 Avicennia marina HOM05D001334 ORTHO05D001119 1.3e-06 56.2 48 50.0
AUR62037769 Chenopodium quinoa HOM05D001334 ORTHO05D001119 1.7e-06 55.8 57 49.1
Migut.K01449 Erythranthe guttata HOM05D001334 ORTHO05D001119 1.7e-06 55.8 54 53.7
Lalb_Chr25g0287521 Lupinus albus HOM05D001334 ORTHO05D001119 1.7e-06 55.8 67 41.8
Nitab4.5_0006819g0050 Nicotiana tabacum HOM05D001334 ORTHO05D001119 1.7e-06 55.8 55 50.9
Prupe.3G303300 Prunus persica HOM05D001334 ORTHO05D001119 1.7e-06 55.8 52 48.1
PGR142G2296 Punica granatum HOM05D001334 ORTHO05D001119 1.7e-06 55.8 53 56.6
Solyc02g093980.3 Solanum lycopersicum HOM05D001334 ORTHO05D001119 1.7e-06 55.8 54 53.7
MSTRG.19886 Avicennia marina HOM05D001334 ORTHO05D001119 2.2e-06 55.5 67 43.3
MSTRG.24084 Avicennia marina HOM05D001334 ORTHO05D001119 2.2e-06 55.5 54 55.6
MELO3C014866.2 Cucumis melo HOM05D001334 ORTHO05D001119 2.2e-06 55.5 56 53.6
DCAR_007010 Daucus carota HOM05D001334 ORTHO05D001119 2.2e-06 55.5 60 48.3
Glyma.19G087900 Glycine max HOM05D001334 ORTHO05D001119 2.2e-06 55.5 62 45.2
Psat1g084960 Pisum sativum HOM05D001334 ORTHO05D001119 2.2e-06 55.5 73 38.4
Rhsim12G0029300 Rhododendron simsii HOM05D001334 ORTHO05D001119 2.2e-06 55.5 50 56.0
Sp3g00250 Schrenkiella parvula HOM05D001334 ORTHO05D001119 2.2e-06 55.5 55 52.7
Ah.10g032590 Amaranthus hybridus HOM05D001334 ORTHO05D001119 2.9e-06 55.1 69 42.0
ATR0605G057 Amborella trichopoda HOM05D001334 ORTHO05D001119 2.9e-06 55.1 69 42.0
Aqoxy1G00275 Aquilegia oxysepala HOM05D001334 ORTHO05D001119 2.9e-06 55.1 66 37.9
CARHR075120 Cardamine hirsuta HOM05D001334 ORTHO05D001119 2.9e-06 55.1 52 50.0
Dinv24115 Davidia involucrata HOM05D001334 ORTHO05D001119 2.9e-06 55.1 68 41.2
Sopen02g038630 Solanum pennellii HOM05D001334 ORTHO05D001119 2.9e-06 55.1 54 53.7
AL3G10320 Arabidopsis lyrata HOM05D001334 ORTHO05D001119 3.8e-06 54.7 53 50.9
BolC3t16207H Brassica oleracea HOM05D001334 ORTHO05D001119 3.8e-06 54.7 51 51.0
CAN.G473.83 Capsicum annuum HOM05D001334 ORTHO05D001119 3.8e-06 54.7 53 52.8
Duzib268G1811 Durio zibethinus HOM05D001334 ORTHO05D001119 3.8e-06 54.7 44 59.1
Glyma.20G208000 Glycine max HOM05D001334 ORTHO05D001119 3.8e-06 54.7 43 58.1
TPR.G7519 Trifolium pratense HOM05D001334 ORTHO05D001119 3.8e-06 54.7 66 43.9
C03p39380 Brassica napus HOM05D001334 ORTHO05D001119 5.0e-06 54.3 51 51.0
MD12G1064400 Malus domestica HOM05D001334 ORTHO05D001119 5.0e-06 54.3 67 43.3
MD14G1064600 Malus domestica HOM05D001334 ORTHO05D001119 5.0e-06 54.3 67 43.3
Os08g0505200 Oryza sativa ssp. japonica HOM05D001334 ORTHO05D001119 5.0e-06 54.3 64 37.5
Os12g0236100 Oryza sativa ssp. japonica HOM05D001334 ORTHO05D001119 5.0e-06 54.3 60 43.3
CANSAT01G2854 Cannabis sativa HOM05D001334 ORTHO05D001119 6.5e-06 53.9 68 42.6
Lalb_Chr02g0157811 Lupinus albus HOM05D001334 ORTHO05D001119 6.5e-06 53.9 60 41.7
Nitab4.5_0000559g0200 Nicotiana tabacum HOM05D001334 ORTHO05D001119 6.5e-06 53.9 57 47.4
Nitab4.5_0002887g0070 Nicotiana tabacum HOM05D001334 ORTHO05D001119 6.5e-06 53.9 51 51.0
Sed0006620 Sechium edule HOM05D001334 ORTHO05D001119 6.5e-06 53.9 56 51.8
PGSC0003DMG400020262 Solanum tuberosum HOM05D001334 ORTHO05D001119 6.5e-06 53.9 51 52.9
THA.LOC104802359 Tarenaya hassleriana HOM05D001334 ORTHO05D001119 6.5e-06 53.9 52 50.0
THA.LOC104802377 Tarenaya hassleriana HOM05D001334 ORTHO05D001119 6.5e-06 53.9 54 46.3
CAN.G75.6 Capsicum annuum HOM05D001334 ORTHO05D001119 8.5e-06 53.5 71 42.3
CsaV3_3G027220 Cucumis sativus L. HOM05D001334 ORTHO05D001119 8.5e-06 53.5 56 51.8
Glyma.19G143600 Glycine max HOM05D001334 ORTHO05D001119 8.5e-06 53.5 67 44.8
Solyc05g015050.3 Solanum lycopersicum HOM05D001334 ORTHO05D001119 8.5e-06 53.5 47 55.3
PGSC0003DMG400012931 Solanum tuberosum HOM05D001334 ORTHO05D001119 8.5e-06 53.5 72 41.7
unitig_578.g15988 Utricularia gibba HOM05D001334 ORTHO05D001119 8.5e-06 53.5 69 40.6


User provided reference genes

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