Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g28784 Nelumbo nucifera HOM05D003235 ORTHO05D003863 4.6e-85 317.8 152 100.0
SalBow5G2974 Salvia bowleyana HOM05D003235 ORTHO05D003863 4.7e-29 131.7 76 85.5
Aqoxy7G01395 Aquilegia oxysepala HOM05D003235 ORTHO05D003863 1.4e-28 130.2 66 92.4
Nn1g03654 Nelumbo nucifera HOM05D003235 ORTHO05D003863 1.8e-28 129.8 66 90.9
Aqoxy4G02019 Aquilegia oxysepala HOM05D003235 ORTHO05D003863 2.3e-28 129.4 66 92.4
CiPaw.05G089800 Carya illinoinensis HOM05D003235 ORTHO05D003863 3.0e-28 129.0 66 90.9
MD00G1083900 Malus domestica HOM05D003235 ORTHO05D003863 5.2e-28 128.3 67 89.6
MD10G1138100 Malus domestica HOM05D003235 ORTHO05D003863 5.2e-28 128.3 67 89.6
ClCG02G003570 Citrullus lanatus HOM05D003235 ORTHO05D003863 6.8e-28 127.9 66 90.9
MELO3C013265.2 Cucumis melo HOM05D003235 ORTHO05D003863 6.8e-28 127.9 66 90.9
CsaV3_7G001740 Cucumis sativus L. HOM05D003235 ORTHO05D003863 6.8e-28 127.9 66 90.9
Prupe.8G176600 Prunus persica HOM05D003235 ORTHO05D003863 6.8e-28 127.9 67 89.6
Sed0003744 Sechium edule HOM05D003235 ORTHO05D003863 6.8e-28 127.9 66 90.9
Sed0009233 Sechium edule HOM05D003235 ORTHO05D003863 6.8e-28 127.9 66 90.9
TWI31G0863 Tripterygium wilfordii HOM05D003235 ORTHO05D003863 6.8e-28 127.9 67 89.6
EL10Ac9g21270 Beta vulgaris HOM05D003235 ORTHO05D003863 8.8e-28 127.5 67 88.1
FAN27G1339 Fragaria x ananassa HOM05D003235 ORTHO05D003863 8.8e-28 127.5 73 84.9
TAR627G1023 Trochodendron aralioides HOM05D003235 ORTHO05D003863 8.8e-28 127.5 66 87.9
Atru.chr5.3499 Acer truncatum HOM05D003235 ORTHO05D003863 1.2e-27 127.1 66 90.9
CiPaw.06G117700 Carya illinoinensis HOM05D003235 ORTHO05D003863 1.2e-27 127.1 66 89.4
Ciclev10028672m.g Citrus clementina HOM05D003235 ORTHO05D003863 1.2e-27 127.1 66 90.9
FvH4_2g16380 Fragaria vesca HOM05D003235 ORTHO05D003863 1.2e-27 127.1 66 90.9
FAN15G0986 Fragaria x ananassa HOM05D003235 ORTHO05D003863 1.2e-27 127.1 66 90.9
FAN24G0538 Fragaria x ananassa HOM05D003235 ORTHO05D003863 1.2e-27 127.1 66 90.9
FAN24G1371 Fragaria x ananassa HOM05D003235 ORTHO05D003863 1.2e-27 127.1 66 90.9
Manes.04G065100 Manihot esculenta HOM05D003235 ORTHO05D003863 1.2e-27 127.1 66 90.9
QL10p000641 Quercus lobata HOM05D003235 ORTHO05D003863 1.2e-27 127.1 65 90.8
SalBow5G2197 Salvia bowleyana HOM05D003235 ORTHO05D003863 1.2e-27 127.1 66 92.4
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 1.2e-27 127.1 66 87.9
unitig_749.g13984 Utricularia gibba HOM05D003235 ORTHO05D003863 1.2e-27 127.1 71 87.3
MSTRG.27622 Avicennia marina HOM05D003235 ORTHO05D003863 1.5e-27 126.7 66 90.9
Rhsim11G0196500 Rhododendron simsii HOM05D003235 ORTHO05D003863 1.5e-27 126.7 66 89.4
Hund00347 Selenicereus undatus HOM05D003235 ORTHO05D003863 1.5e-27 126.7 66 89.4
TWI79G1341 Tripterygium wilfordii HOM05D003235 ORTHO05D003863 1.5e-27 126.7 67 88.1
vmacro09726 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 1.5e-27 126.7 66 90.9
Aa31LG2G14790 Aethionema arabicum HOM05D003235 ORTHO05D003863 2.0e-27 126.3 66 86.4
Haze_02042 Corylus avellana HOM05D003235 ORTHO05D003863 2.0e-27 126.3 66 89.4
DCAR_015672 Daucus carota HOM05D003235 ORTHO05D003863 2.0e-27 126.3 67 88.1
Gohir.A04G125200 Gossypium hirsutum HOM05D003235 ORTHO05D003863 2.0e-27 126.3 66 89.4
Gohir.D04G170000 Gossypium hirsutum HOM05D003235 ORTHO05D003863 2.0e-27 126.3 66 89.4
Gorai.012G158300 Gossypium raimondii HOM05D003235 ORTHO05D003863 2.0e-27 126.3 66 89.4
Manes.11G106900 Manihot esculenta HOM05D003235 ORTHO05D003863 2.0e-27 126.3 66 89.4
CAN.G1804.1 Capsicum annuum HOM05D003235 ORTHO05D003863 2.6e-27 125.9 66 90.9
Eucgr.I01507 Eucalyptus grandis HOM05D003235 ORTHO05D003863 2.6e-27 125.9 66 89.4
Solyc08g082340.3 Solanum lycopersicum HOM05D003235 ORTHO05D003863 2.6e-27 125.9 66 90.9
Sopen08g030600 Solanum pennellii HOM05D003235 ORTHO05D003863 2.6e-27 125.9 66 90.9
PGSC0003DMG400012284 Solanum tuberosum HOM05D003235 ORTHO05D003863 2.6e-27 125.9 66 90.9
CSS0024694 Camellia sinensis var. sinensis HOM05D003235 ORTHO05D003863 3.4e-27 125.6 66 89.4
CAN.G1235.15 Capsicum annuum HOM05D003235 ORTHO05D003863 3.4e-27 125.6 66 89.4
Cc08_g00700 Coffea canephora HOM05D003235 ORTHO05D003863 3.4e-27 125.6 66 89.4
Cc09_g10610 Coffea canephora HOM05D003235 ORTHO05D003863 3.4e-27 125.6 66 89.4
Duzib248G1500 Durio zibethinus HOM05D003235 ORTHO05D003863 3.4e-27 125.6 66 86.4
FvH4_5g27680 Fragaria vesca HOM05D003235 ORTHO05D003863 3.4e-27 125.6 66 89.4
Lj6g0023552 Lotus japonicus HOM05D003235 ORTHO05D003863 3.4e-27 125.6 67 88.1
Peaxi162Scf00362g00250 Petunia axillaris HOM05D003235 ORTHO05D003863 3.4e-27 125.6 66 89.4
Rhsim05G0048800 Rhododendron simsii HOM05D003235 ORTHO05D003863 3.4e-27 125.6 66 89.4
RcHm_v2.0_Chr6g0280151 Rosa chinensis HOM05D003235 ORTHO05D003863 3.4e-27 125.6 67 86.6
SGA_v2.0_scaffold98G29294 Striga asiatica HOM05D003235 ORTHO05D003863 3.4e-27 125.6 66 90.9
vmacro17286 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 3.4e-27 125.6 66 89.4
Actinidia18009 Actinidia chinensis HOM05D003235 ORTHO05D003863 4.4e-27 125.2 66 89.4
Actinidia32018 Actinidia chinensis HOM05D003235 ORTHO05D003863 4.4e-27 125.2 66 90.9
COL.COLO4_17945 Corchorus olitorius HOM05D003235 ORTHO05D003863 4.4e-27 125.2 66 87.9
Dinv14158 Davidia involucrata HOM05D003235 ORTHO05D003863 4.4e-27 125.2 66 89.4
FAN04G0585 Fragaria x ananassa HOM05D003235 ORTHO05D003863 4.4e-27 125.2 66 87.9
Lj9A405T66 Lonicera japonica HOM05D003235 ORTHO05D003863 4.4e-27 125.2 67 86.6
PSO541G0846 Papaver somniferum HOM05D003235 ORTHO05D003863 4.4e-27 125.2 66 87.9
PSO675G5274 Papaver somniferum HOM05D003235 ORTHO05D003863 4.4e-27 125.2 66 87.9
Sc14g0002390 Simmondsia chinensis HOM05D003235 ORTHO05D003863 4.4e-27 125.2 66 87.9
SGA_v2.0_scaffold80G25821 Striga asiatica HOM05D003235 ORTHO05D003863 4.4e-27 125.2 68 88.2
arahy.Tifrunner.gnm1.ann1.0G9KRE Arachis hypogaea HOM05D003235 ORTHO05D003863 5.7e-27 124.8 67 85.1
arahy.Tifrunner.gnm1.ann1.S5QGNM Arachis hypogaea HOM05D003235 ORTHO05D003863 5.7e-27 124.8 67 85.1
Migut.N01350 Erythranthe guttata HOM05D003235 ORTHO05D003863 5.7e-27 124.8 66 90.9
PGR142G4436 Punica granatum HOM05D003235 ORTHO05D003863 5.7e-27 124.8 66 87.9
QL11p054430 Quercus lobata HOM05D003235 ORTHO05D003863 5.7e-27 124.8 66 87.9
QL11p054583 Quercus lobata HOM05D003235 ORTHO05D003863 5.7e-27 124.8 66 87.9
Dinv41888 Davidia involucrata HOM05D003235 ORTHO05D003863 7.5e-27 124.4 66 87.9
Lalb_Chr15g0083901 Lupinus albus HOM05D003235 ORTHO05D003863 7.5e-27 124.4 67 86.6
Medtr2g438210 Medicago truncatula HOM05D003235 ORTHO05D003863 7.5e-27 124.4 67 86.6
Medtr4g127910 Medicago truncatula HOM05D003235 ORTHO05D003863 7.5e-27 124.4 67 86.6
Oeu051847.1 Olea europaea HOM05D003235 ORTHO05D003863 7.5e-27 124.4 68 85.3
Phvul.003G022900 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 7.5e-27 124.4 67 86.6
Sp6g22200 Schrenkiella parvula HOM05D003235 ORTHO05D003863 7.5e-27 124.4 67 85.1
Hund17321 Selenicereus undatus HOM05D003235 ORTHO05D003863 7.5e-27 124.4 67 85.1
VMungo1215G3112 Vigna mungo HOM05D003235 ORTHO05D003863 7.5e-27 124.4 67 86.6
Glyma.09G119200 Glycine max HOM05D003235 ORTHO05D003863 9.8e-27 124.0 67 85.1
Thecc.02G046900 Theobroma cacao HOM05D003235 ORTHO05D003863 9.8e-27 124.0 66 86.4
AL8G37210 Arabidopsis lyrata HOM05D003235 ORTHO05D003863 1.3e-26 123.6 66 86.4
AT5G60620 Arabidopsis thaliana HOM05D003235 ORTHO05D003863 1.3e-26 123.6 66 86.4
Carub.0008s2130 Capsella rubella HOM05D003235 ORTHO05D003863 1.3e-26 123.6 66 86.4
CDE11G0005 Ceratophyllum demersum HOM05D003235 ORTHO05D003863 1.3e-26 123.6 66 87.9
Lalb_Chr20g0114201 Lupinus albus HOM05D003235 ORTHO05D003863 1.3e-26 123.6 67 86.6
MBI02_g34309_MAGBIO Magnolia biondii HOM05D003235 ORTHO05D003863 1.3e-26 123.6 66 87.9
PGR042G2488 Punica granatum HOM05D003235 ORTHO05D003863 1.3e-26 123.6 66 86.4
SHI05839 Sapria himalayana HOM05D003235 ORTHO05D003863 1.3e-26 123.6 66 86.4
GSVIVG01023935001 Vitis vinifera HOM05D003235 ORTHO05D003863 1.3e-26 123.6 66 89.4
ATR1159G019 Amborella trichopoda HOM05D003235 ORTHO05D003863 1.7e-26 123.2 66 87.9
Cpa.g.sc20.187 Carica papaya HOM05D003235 ORTHO05D003863 1.7e-26 123.2 66 86.4
CDE05G0254 Ceratophyllum demersum HOM05D003235 ORTHO05D003863 1.7e-26 123.2 64 90.6
ECA236G2309 Erigeron canadensis HOM05D003235 ORTHO05D000512 1.7e-26 123.2 66 89.4
ECA236G3279 Erigeron canadensis HOM05D003235 ORTHO05D003863 1.7e-26 123.2 66 89.4
Thhalv10013846m.g Eutrema salsugineum HOM05D003235 ORTHO05D003863 1.7e-26 123.2 67 83.6
HanXRQChr11g0335221 Helianthus annuus HOM05D003235 ORTHO05D003863 1.7e-26 123.2 66 89.4
Lsat_1_v5_gn_7_116021 Lactuca sativa HOM05D003235 ORTHO05D003863 1.7e-26 123.2 66 89.4
arahy.Tifrunner.gnm1.ann1.5A4VTA Arachis hypogaea HOM05D003235 ORTHO05D003863 2.2e-26 122.9 67 83.6
arahy.Tifrunner.gnm1.ann1.MB0JZI Arachis hypogaea HOM05D003235 ORTHO05D003863 2.2e-26 122.9 67 83.6
BcaB08g36361 Brassica carinata HOM05D003235 ORTHO05D003863 2.2e-26 122.9 67 83.6
BcaC04g19724 Brassica carinata HOM05D003235 ORTHO05D003863 2.2e-26 122.9 67 83.6
A10p17830 Brassica napus HOM05D003235 ORTHO05D003863 2.2e-26 122.9 67 83.6
C09p53360 Brassica napus HOM05D003235 ORTHO05D003863 2.2e-26 122.9 67 83.6
BolC9t58209H Brassica oleracea HOM05D003235 ORTHO05D003863 2.2e-26 122.9 67 83.6
Ca_25919_v3 Cicer arietinum L. HOM05D003235 ORTHO05D003863 2.2e-26 122.9 67 83.6
Glyma.05G131100 Glycine max HOM05D003235 ORTHO05D003863 2.2e-26 122.9 66 84.8
Glyma.08G085800 Glycine max HOM05D003235 ORTHO05D003863 2.2e-26 122.9 66 84.8
Lsat_1_v5_gn_8_120260 Lactuca sativa HOM05D003235 ORTHO05D003863 2.2e-26 122.9 66 87.9
Nitab4.5_0000783g0290 Nicotiana tabacum HOM05D003235 ORTHO05D003863 2.2e-26 122.9 84 75.0
Phvul.002G191600 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 2.2e-26 122.9 66 84.8
VMungo0251G0657 Vigna mungo HOM05D003235 ORTHO05D003863 2.2e-26 122.9 66 84.8
Ah.01g023630 Amaranthus hybridus HOM05D003235 ORTHO05D003863 2.8e-26 122.5 66 83.3
BcaNung00615 Brassica carinata HOM05D003235 ORTHO05D003863 2.8e-26 122.5 66 84.8
BcaNung00616 Brassica carinata HOM05D003235 ORTHO05D003863 2.8e-26 122.5 66 84.8
A01p03310 Brassica napus HOM05D003235 ORTHO05D003863 2.8e-26 122.5 66 84.8
C01p03650 Brassica napus HOM05D003235 ORTHO05D003863 2.8e-26 122.5 66 84.8
BolC1t00356H Brassica oleracea HOM05D003235 ORTHO05D003863 2.8e-26 122.5 66 84.8
BraA01t00316Z Brassica rapa HOM05D003235 ORTHO05D003863 2.8e-26 122.5 66 84.8
CARHR274300 Cardamine hirsuta HOM05D003235 ORTHO05D003863 2.8e-26 122.5 66 84.8
Sp7g33030 Schrenkiella parvula HOM05D003235 ORTHO05D003863 2.8e-26 122.5 66 84.8
CANSAT11G0145 Cannabis sativa HOM05D003235 ORTHO05D003863 3.7e-26 122.1 66 84.8
Gohir.A03G209200 Gossypium hirsutum HOM05D003235 ORTHO05D003863 3.7e-26 122.1 67 82.1
Gohir.D02G230900 Gossypium hirsutum HOM05D003235 ORTHO05D003863 3.7e-26 122.1 67 82.1
Gorai.005G258500 Gossypium raimondii HOM05D003235 ORTHO05D003863 3.7e-26 122.1 67 82.1
Actinidia20561 Actinidia chinensis HOM05D003235 ORTHO05D003863 4.8e-26 121.7 71 81.7
Ah.01g007750 Amaranthus hybridus HOM05D003235 ORTHO05D003863 4.8e-26 121.7 66 84.8
ECA233G5747 Erigeron canadensis HOM05D003235 ORTHO05D003863 4.8e-26 121.7 66 86.4
FAN13G0036 Fragaria x ananassa HOM05D003235 ORTHO05D003863 4.8e-26 121.7 64 89.1
Potri.004G183300 Populus trichocarpa HOM05D003235 ORTHO05D003863 4.8e-26 121.7 66 84.8
TPR.G31486 Trifolium pratense HOM05D003235 ORTHO05D003863 6.3e-26 121.3 67 82.1
FAN08G2058 Fragaria x ananassa HOM05D003235 ORTHO05D003863 8.3e-26 120.9 66 86.4
Psat1g147840 Pisum sativum HOM05D003235 ORTHO05D003863 1.1e-25 120.6 64 87.5
AUR62012940 Chenopodium quinoa HOM05D003235 ORTHO05D003863 1.4e-25 120.2 66 84.8
AUR62027140 Chenopodium quinoa HOM05D003235 ORTHO05D003863 1.4e-25 120.2 66 84.8
Ca_02021_v3 Cicer arietinum L. HOM05D003235 ORTHO05D003863 1.4e-25 120.2 67 80.6
HanXRQChr14g0458991 Helianthus annuus HOM05D003235 ORTHO05D003863 1.4e-25 120.2 66 84.8
HPP92_011715 Vanilla planifolia HOM05D003235 ORTHO05D003863 1.4e-25 120.2 69 79.7
HPP92_017619 Vanilla planifolia HOM05D003235 ORTHO05D003863 1.8e-25 119.8 71 80.3
Sabra09G0111000 Salix brachista HOM05D003235 ORTHO05D003863 2.4e-25 119.4 66 84.8
vmacro20801 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 2.4e-25 119.4 67 86.6
Potri.009G143200 Populus trichocarpa HOM05D003235 ORTHO05D003863 3.1e-25 119.0 66 83.3
THA.LOC104819684 Tarenaya hassleriana HOM05D003235 ORTHO05D003863 3.1e-25 119.0 66 81.8
THA.LOC104807394 Tarenaya hassleriana HOM05D003235 ORTHO05D003863 4.1e-25 118.6 66 81.8
Os07g0531600 Oryza sativa ssp. japonica HOM05D003235 ORTHO05D003863 9.1e-25 117.5 68 79.4
Zm00001eb323170 Zea mays HOM05D003235 ORTHO05D003863 9.1e-25 117.5 68 79.4
Zm00001eb396350 Zea mays HOM05D003235 ORTHO05D003863 9.1e-25 117.5 82 73.2
Mapoly0005s0123 Marchantia polymorpha HOM05D003235 ORTHO05D003863 2.7e-24 115.9 85 70.6
SMO164G0177 Selaginella moellendorffii HOM05D003235 ORTHO05D003863 2.7e-24 115.9 88 68.2
vmacro20582 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 2.7e-24 115.9 67 83.6
Mapoly0113s0056 Marchantia polymorpha HOM05D003235 ORTHO05D003863 3.5e-24 115.5 72 75.0
AagrBONN_evm.TU.Sc2ySwM_344.1475 Anthoceros agrestis HOM05D003235 ORTHO05D003863 7.7e-24 114.4 66 81.8
Eucgr.G01836 Eucalyptus grandis HOM05D003235 ORTHO05D003863 1.7e-23 113.2 82 63.4
Eucgr.G01837 Eucalyptus grandis HOM05D003235 ORTHO05D003863 1.7e-23 113.2 82 63.4
Pp3c11_26030 Physcomitrium patens HOM05D003235 ORTHO05D003863 2.2e-23 112.8 71 73.2
SEGI_03808 Sequoiadendron giganteum HOM05D003235 ORTHO05D003863 5.0e-23 111.7 73 69.9
AagrBONN_evm.TU.Sc2ySwM_344.5027 Anthoceros agrestis HOM05D003235 ORTHO05D003863 6.5e-23 111.3 71 74.6
HanXRQChr08g0236381 Helianthus annuus HOM05D003235 ORTHO05D003863 8.5e-23 110.9 66 83.3
SEGI_35719 Sequoiadendron giganteum HOM05D003235 ORTHO05D003863 1.1e-22 110.5 58 86.2
CBR_g18671 Chara braunii HOM05D003235 ORTHO05D003863 1.5e-22 110.2 72 73.6
vmacro02323 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 5.2e-20 101.7 77 68.8
PRCOL_00006733 Prasinoderma coloniale HOM05D003235 ORTHO05D003863 8.3e-18 94.4 68 64.7
Actinidia26336 Actinidia chinensis HOM05D003235 ORTHO05D003863 9.2e-17 90.9 90 56.7
MCO05G004 Micromonas commoda HOM05D003235 ORTHO05D003863 3.3e-14 82.4 97 42.3
Cre06.g273250 Chlamydomonas reinhardtii HOM05D003235 ORTHO05D003863 2.1e-13 79.7 69 47.8
FAN18G1267 Fragaria x ananassa HOM05D003235 ORTHO05D003863 3.2e-09 65.9 34 85.3
Nitab4.5_0006796g0050 Nicotiana tabacum HOM05D003235 ORTHO05D003863 9.2e-09 64.3 33 90.9
EL10Ac3g05050 Beta vulgaris HOM05D003235 ORTHO05D003863 1.2e-08 63.9 70 51.4
COL.COLO4_24688 Corchorus olitorius HOM05D003235 ORTHO05D003863 1.2e-08 63.9 33 87.9
vmacro20805 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 1.0e-07 60.8 45 68.9
EL10Ac3g05834 Beta vulgaris HOM05D003235 ORTHO05D003863 6.6e-07 58.2 89 40.4
TPR.G24036 Trifolium pratense HOM05D000096 ORTHO05D009933 6.6e-07 58.2 34 76.5
TPR.G8545 Trifolium pratense HOM05D003235 ORTHO05D003863 1.1e-06 57.4 34 70.6


User provided reference genes

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